FFCP PHASE1:Mm9::chr17:34324734..34324773,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=21354|HGNC=|MCL_coexpression_id=452|UniProt=Q3TBA3|association_with_transcript=0bp_to_ENSMUST00000041633_5end|description=CAGE_peak_1_at_Tap1_5end|id=chr17:34324734..34324773,+|ontology_enrichment_celltype=CL:0000063!3.59e-14!66;CL:0002320!7.22e-12!46;CL:0000134!7.22e-12!46;CL:0000219!2.58e-11!54;CL:0000988!1.62e-09!32;CL:0002032!1.62e-09!32;CL:0000037!1.62e-09!32;CL:0000566!1.62e-09!32;CL:0000837!1.62e-09!32;CL:0002031!4.96e-08!25;CL:0000738!3.51e-07!17;CL:0002087!3.51e-07!17|ontology_enrichment_celltype_v019_2=CL:0002320,3.16e-12,46;CL:0000134,3.16e-12,46;CL:0000219,8.29e-12,54;CL:0000988,7.93e-10,32;CL:0002032,7.93e-10,32;CL:0000037,7.93e-10,32;CL:0000837,7.93e-10,32;CL:0002031,3.06e-08,25;CL:0000738,2.19e-07,17;CL:0002087,2.19e-07,17;CL:0000838,8.20e-07,12|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.07e-15!48;UBERON:0002390!4.77e-14!45;UBERON:0003061!4.77e-14!45;UBERON:0002405!6.43e-14!70;UBERON:0002384!7.22e-12!46;UBERON:0004119!1.20e-10!130;UBERON:0000925!1.20e-10!130;UBERON:0006595!1.20e-10!130;UBERON:0001007!3.19e-10!128;UBERON:0001555!3.19e-10!128;UBERON:0007026!3.19e-10!128;UBERON:0000490!1.48e-09!66;UBERON:0004921!1.78e-09!126;UBERON:0004185!1.78e-09!126;UBERON:0004923!3.05e-09!24;UBERON:0003081!4.04e-09!88;UBERON:0002204!6.40e-09!32;UBERON:0002371!2.69e-08!16;UBERON:0003929!4.39e-08!55;UBERON:0000344!4.72e-08!15;UBERON:0005911!1.22e-07!69;UBERON:0004177!3.60e-07!29;UBERON:0001242!4.11e-07!13;UBERON:0000060!4.11e-07!13;UBERON:0001262!4.11e-07!13;UBERON:0004786!4.11e-07!13;UBERON:0001474!7.91e-07!22;UBERON:0004765!7.91e-07!22;UBERON:0001434!7.91e-07!22|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.20e-16,48;UBERON:0002405,3.20e-16,48;UBERON:0002390,1.58e-14,45;UBERON:0003061,1.58e-14,45;UBERON:0002384,3.16e-12,46;UBERON:0004119,1.80e-11,118;UBERON:0000925,1.80e-11,118;UBERON:0006595,1.80e-11,118;UBERON:0001007,4.95e-11,116;UBERON:0001555,4.95e-11,116;UBERON:0007026,4.95e-11,116;UBERON:0004921,3.08e-10,114;UBERON:0000490,1.00e-09,66;UBERON:0004923,2.03e-09,24;UBERON:0003081,4.43e-09,87;UBERON:0002204,5.28e-09,32;UBERON:0002371,1.89e-08,16;UBERON:0003929,2.78e-08,55;UBERON:0000077,3.11e-08,35;UBERON:0000344,3.35e-08,15;UBERON:0005911,7.90e-08,69;UBERON:0004177,1.85e-07,29;UBERON:0005057,1.85e-07,29;UBERON:0001242,3.06e-07,13;UBERON:0001262,3.06e-07,13;UBERON:0004786,3.06e-07,13;UBERON:0000926,6.96e-07,120;UBERON:0004120,6.96e-07,120;UBERON:0006603,6.96e-07,120;UBERON:0001474,7.30e-07,22;UBERON:0004765,7.30e-07,22;UBERON:0001434,7.30e-07,22|phase1_expression=1.44133962394315,46.413729216035,38.219936108721,51.1164517108543,57.1021132138836,13.4303417529512,21.0251376535973,84.4466535307909,23.9340827657833,36.045937053587,7.70480857014772,9.73220339743104,42.2865802930078,66.352085436019,16.3223783289675,14.5782192520675,7.69518065940961,49.054366713206,31.1249764285027,27.585327366872,6.88850650223665,16.2837159969452,21.1571829202538,24.798825532978,30.0526158197993,32.1569899904411,36.6147696735214,30.1659725760245,31.9239344686708,46.8776041353471,40.5766834499208,1.27006134691926,0.61506478758457,0,7.79899373328441,9.14290549471708,7.55426618170766,45.6199477503229,36.7227611926186,23.5585684788209,25.8821854733646,34.8353197328807,26.2175590636823,12.211991343631,12.1652317463417,7.52541683862894,15.6478268869608,1.74420125104357,7.0299578475031,4.47188767870852,9.09911740564856,0,25.1673909086605,28.2891235384424,31.9289109185341,4.63066984864705,6.01720223871389,8.25075347643908,0,0,0,13.2149367506962,21.3430751066673,40.9454371363037,51.4210508534827,48.3126478163348,14.9800055259202,8.83702102239575,0,0,0,0.285650984403804,0.662605622854841,0,0,0,0,0.893811366596314,0.46081959976873,0,0.0914876436024097,0,0.279182999001381,0.56276261003168,0.30559649555362,0.589257170947335,0.569486723196412,0.372798891650601,5.60373830665562,4.91215140694106,19.1310562543107,10.3250865237766,2.719885334831,1.61910957491345,3.89865850468601,4.03224198387602,5.33688796500657,5.62420064507591,7.27400812888033,6.00677276667578,0.563373679106722,11.5493829672886,10.1922095882658,0,1.73192832808971,0.760079596425296,1.01104889002957,11.0758363327488,52.823328264023,16.4770774361956,1.21439728736295,1.82679286987285,1.38369298353635,2.71300752994721,3.99801604261396,5.27799683584637,7.91023896749996,12.5801440520323,30.0767587662957,2.75003644910596,3.97514733228708,5.33362778448744,1.86391761218122,0.292780797011547,0.41889341362691,44.9604417167121,22.4054282826071,23.9961092397363,24.5245538251015,0.748953197024114,0.915001205637253,0.125654352112864,0.695297280769106,0.767146371990992,1.24672826735736,0.162241263067758,3.97173519016234,6.84238338355512,5.55990068554084,6.52369753248069,0.260240885925407,0.229902104433473,0,0.30140963567143,0.816437989815934,0.512454881139399,0.843315521037559,1.29351685369508,0,0.189106080167819,1.05570674498369,1.09597866213787,1.39023624612799,1.74126083261083,2.26360350048738,0.39806853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| ||
|EntrezGene=21354 | |||
|HGNC= | |||
|MCL_coexpression_id=452 | |||
|UniProt=Q3TBA3 | |||
|association_with_transcript=0bp_to_ENSMUST00000041633_5end | |||
|description=CAGE_peak_1_at_Tap1_5end | |||
|id=chr17:34324734..34324773,+ | |||
|ontology_enrichment_celltype=CL:0000063!3.59e-14!66;CL:0002320!7.22e-12!46;CL:0000134!7.22e-12!46;CL:0000219!2.58e-11!54;CL:0000988!1.62e-09!32;CL:0002032!1.62e-09!32;CL:0000037!1.62e-09!32;CL:0000566!1.62e-09!32;CL:0000837!1.62e-09!32;CL:0002031!4.96e-08!25;CL:0000738!3.51e-07!17;CL:0002087!3.51e-07!17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002320,3.16e-12,46;CL:0000134,3.16e-12,46;CL:0000219,8.29e-12,54;CL:0000988,7.93e-10,32;CL:0002032,7.93e-10,32;CL:0000037,7.93e-10,32;CL:0000837,7.93e-10,32;CL:0002031,3.06e-08,25;CL:0000738,2.19e-07,17;CL:0002087,2.19e-07,17;CL:0000838,8.20e-07,12 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.07e-15!48;UBERON:0002390!4.77e-14!45;UBERON:0003061!4.77e-14!45;UBERON:0002405!6.43e-14!70;UBERON:0002384!7.22e-12!46;UBERON:0004119!1.20e-10!130;UBERON:0000925!1.20e-10!130;UBERON:0006595!1.20e-10!130;UBERON:0001007!3.19e-10!128;UBERON:0001555!3.19e-10!128;UBERON:0007026!3.19e-10!128;UBERON:0000490!1.48e-09!66;UBERON:0004921!1.78e-09!126;UBERON:0004185!1.78e-09!126;UBERON:0004923!3.05e-09!24;UBERON:0003081!4.04e-09!88;UBERON:0002204!6.40e-09!32;UBERON:0002371!2.69e-08!16;UBERON:0003929!4.39e-08!55;UBERON:0000344!4.72e-08!15;UBERON:0005911!1.22e-07!69;UBERON:0004177!3.60e-07!29;UBERON:0001242!4.11e-07!13;UBERON:0000060!4.11e-07!13;UBERON:0001262!4.11e-07!13;UBERON:0004786!4.11e-07!13;UBERON:0001474!7.91e-07!22;UBERON:0004765!7.91e-07!22;UBERON:0001434!7.91e-07!22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.20e-16,48;UBERON:0002405,3.20e-16,48;UBERON:0002390,1.58e-14,45;UBERON:0003061,1.58e-14,45;UBERON:0002384,3.16e-12,46;UBERON:0004119,1.80e-11,118;UBERON:0000925,1.80e-11,118;UBERON:0006595,1.80e-11,118;UBERON:0001007,4.95e-11,116;UBERON:0001555,4.95e-11,116;UBERON:0007026,4.95e-11,116;UBERON:0004921,3.08e-10,114;UBERON:0000490,1.00e-09,66;UBERON:0004923,2.03e-09,24;UBERON:0003081,4.43e-09,87;UBERON:0002204,5.28e-09,32;UBERON:0002371,1.89e-08,16;UBERON:0003929,2.78e-08,55;UBERON:0000077,3.11e-08,35;UBERON:0000344,3.35e-08,15;UBERON:0005911,7.90e-08,69;UBERON:0004177,1.85e-07,29;UBERON:0005057,1.85e-07,29;UBERON:0001242,3.06e-07,13;UBERON:0001262,3.06e-07,13;UBERON:0004786,3.06e-07,13;UBERON:0000926,6.96e-07,120;UBERON:0004120,6.96e-07,120;UBERON:0006603,6.96e-07,120;UBERON:0001474,7.30e-07,22;UBERON:0004765,7.30e-07,22;UBERON:0001434,7.30e-07,22 | |||
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| |||
|short_description=p1@Tap1 | |||
}} |
Revision as of 14:12, 13 September 2013
Short description: | p1@Tap1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tap1_5end |
Coexpression cluster: | MCL_coexpression_mm9:452 |
Association with transcript: | 0bp_to_ENSMUST00000041633_5end |
EntrezGene: | Tap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue cell | 3.16e-12 | 46 |
mesenchymal cell | 3.16e-12 | 46 |
motile cell | 8.29e-12 | 54 |
hematopoietic cell | 7.93e-10 | 32 |
hematopoietic oligopotent progenitor cell | 7.93e-10 | 32 |
hematopoietic stem cell | 7.93e-10 | 32 |
hematopoietic multipotent progenitor cell | 7.93e-10 | 32 |
hematopoietic lineage restricted progenitor cell | 3.06e-08 | 25 |
leukocyte | 2.19e-07 | 17 |
nongranular leukocyte | 2.19e-07 | 17 |
lymphoid lineage restricted progenitor cell | 8.20e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.20e-16 | 48 |
immune system | 3.20e-16 | 48 |
hematopoietic system | 1.58e-14 | 45 |
blood island | 1.58e-14 | 45 |
connective tissue | 3.16e-12 | 46 |
endoderm-derived structure | 1.80e-11 | 118 |
endoderm | 1.80e-11 | 118 |
presumptive endoderm | 1.80e-11 | 118 |
digestive system | 4.95e-11 | 116 |
digestive tract | 4.95e-11 | 116 |
primitive gut | 4.95e-11 | 116 |
subdivision of digestive tract | 3.08e-10 | 114 |
unilaminar epithelium | 1.00e-09 | 66 |
organ component layer | 2.03e-09 | 24 |
lateral plate mesoderm | 4.43e-09 | 87 |
musculoskeletal system | 5.28e-09 | 32 |
bone marrow | 1.89e-08 | 16 |
gut epithelium | 2.78e-08 | 55 |
mixed endoderm/mesoderm-derived structure | 3.11e-08 | 35 |
mucosa | 3.35e-08 | 15 |
endo-epithelium | 7.90e-08 | 69 |
hemopoietic organ | 1.85e-07 | 29 |
immune organ | 1.85e-07 | 29 |
intestinal mucosa | 3.06e-07 | 13 |
wall of intestine | 3.06e-07 | 13 |
gastrointestinal system mucosa | 3.06e-07 | 13 |
mesoderm | 6.96e-07 | 120 |
mesoderm-derived structure | 6.96e-07 | 120 |
presumptive mesoderm | 6.96e-07 | 120 |
bone element | 7.30e-07 | 22 |
skeletal element | 7.30e-07 | 22 |
skeletal system | 7.30e-07 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.