FFCP PHASE1:Mm9::chr8:74225695..74225740,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72297|HGNC=|MCL_coexpression_id=12|UniProt=Q5JCS9|association_with_transcript=0bp_to_NM_028189,uc009mer.2_5end|description=CAGE_peak_1_at_B3gnt3_5end|id=chr8:74225695..74225740,-|ontology_enrichment_celltype=CL:0002076!1.98e-09!15;CL:0002563!8.21e-07!9;CL:0002251!8.21e-07!9|ontology_enrichment_celltype_v019_2=CL:0002076,4.80e-11,15;CL:0000066,2.46e-08,25;CL:0002563,6.78e-08,9;CL:0002251,6.78e-08,9;CL:0000223,7.38e-08,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!1.65e-16!59;UBERON:0000160!1.63e-15!43;UBERON:0004119!5.45e-15!130;UBERON:0000925!5.45e-15!130;UBERON:0006595!5.45e-15!130;UBERON:0001007!3.61e-14!128;UBERON:0001555!3.61e-14!128;UBERON:0007026!3.61e-14!128;UBERON:0004921!2.58e-13!126;UBERON:0004185!2.58e-13!126;UBERON:0000344!7.42e-10!15;UBERON:0001242!5.54e-09!13;UBERON:0000060!5.54e-09!13;UBERON:0001262!5.54e-09!13;UBERON:0004786!5.54e-09!13;UBERON:0004923!1.40e-07!24;UBERON:0003350!8.21e-07!9;UBERON:0004808!8.21e-07!9;UBERON:0001277!8.21e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.92e-20,31;UBERON:0005409,5.17e-19,47;UBERON:0004119,3.45e-12,118;UBERON:0000925,3.45e-12,118;UBERON:0006595,3.45e-12,118;UBERON:0000344,1.48e-11,15;UBERON:0001007,2.31e-11,116;UBERON:0001555,2.31e-11,116;UBERON:0007026,2.31e-11,116;UBERON:0004921,1.65e-10,114;UBERON:0001242,1.66e-10,13;UBERON:0001262,1.66e-10,13;UBERON:0004786,1.66e-10,13;UBERON:0004923,2.14e-08,24;UBERON:0003350,6.78e-08,9;UBERON:0004808,6.78e-08,9;UBERON:0001277,6.78e-08,9|phase1_expression=0,34.1995899486574,29.1199513209303,38.1104906246606,32.0573267165662,12.0873075776561,9.81173090501208,0,0.140788722151667,0,0,0,0.513602189793617,0.0874204024189974,0,0.202475267389826,0,0.788655413395594,0.822686601634433,0,0.850432901510698,0.0992909512008853,0,7.83962871687693,7.79991555628378,26.4146703492909,20.2458138194765,15.0829862880122,9.12112413390595,12.0974462284767,12.1951780860418,0,0,0,18.4865036640816,19.6156881523021,18.3752420636132,0.418531630736908,0,0.523523743973798,1.17646297606203,0,0,0,0,0,2.34717403304412,0.436050312760893,0.439372365468944,0.194429899074283,0.839918529752175,0,0.503347818173209,0.725362142011344,0,1.02903774414379,1.43266719969378,0,0,0,0,0,0.889294796111139,5.39939830368839,5.93319817540185,6.3943210345149,2.09720077362883,0.384218305321555,0,0,0,0,0,0.244981598429908,0.0958454710182364,0,0,0.383062014255563,0.153606533256243,0,0.0914876436024097,0,0,0,0,0,0.284743361598206,0,0.151452386666368,0,14.7830889237856,5.16254326188832,0,0,0.649776417447669,0,1.82577746171277,1.02258193546835,0.259786004602869,0.35333957451034,0,3.84979432242953,2.54805239706646,7.11066703153331,23.8140145112336,22.0423082963336,20.2209778005913,4.90990682791958,2.33044095282455,1.92974780784272,0.693941307064543,0.913396434936424,1.61430848079241,1.65794904607885,0.940709657085638,3.26733137457156,16.3148678704687,3.18118585223806,0,1.29413479957927,1.54589062922275,2.42437626567611,29.8226817948995,0,0.41889341362691,36.0194447844114,0.11981512450592,0,0.127070227073065,0,0,0,0.347648640384553,0,0.62336413367868,0,0.407357455401265,0.995255764880744,0.505445516867349,1.89397670297827,0.260240885925407,0,0.180062129805349,0.30140963567143,0.884474488967262,0.640568601424249,0.468508622798644,0.258703370739016,0.215567992932842,0.378212160335639,0.175951124163949,0,0.556094498451196,0.348252166522167,0.823128545631774,0,0,0,0,1.44988040774851,1.17263029990548,0.900310307305074,0.473489471170421,0.787056926989615,0.925602677324269,1.16266972375204,1.60964040839772,2.33530684734339,2.63295759861569,2.79084688934462,2.99954595319666,3.36259971078264,3.29325172936576,4.96563749413376,0.841159794256509,0.205809224758569,89.5434901886093,23.2716498663919,0.213288250535234,1.16118335930219,3.47942145569652,6.45387278794696,6.67134131534611,9.51128130562796,34.6406214927493,15.811099653505,10.5560787696113,9.35095418593409,14.0374142725766,30.5598598942435,26.5849801345874,29.273767168392,0,0.456994050438915,1.1270773567308,1.22190796707189,1.55161989734101,1.1221731182451,1.64414996523069,2.21415221969403,1.41298855057237,1.60416313098341,0.889357881261447,0.500535317148282,0.196558995113203,0.899448449539415,0.608580364165509,0.964708639009667,0.50925170356284,0.863088412352432,1.13494658742525,1.09824565275233,0,1.86070473834252,2.18426371180192,1.76805214562978,0.717589654087649,1.4473305640901,6.65111484599777,0.37898282354097,0.325929952884052,0.509235257325564,0.938760993154008,1.84256883185997,2.85652369063216,3.90267295715598,1.10344600874334,3.5434350343804,2.39182152986231,4.58817281204066,5.18054945597687,6.65385669474953,3.01582567878545,2.17562273527484,2.45882136509518,2.75936746304733,0.321101179975584,0.234423373184406,0,3.53459298086122,0,0,0,0,0,0,0,0,0,0.642642632843614,1.27746076687442,0.534196811001766,0.488660878060728,5.60898418106621,0,0.728341908464944,0.906970670894253,0.565815239267694,1.47650946440386,2.45948118355142,5.94385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| ||
|EntrezGene=72297 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=Q5JCS9 | |||
|association_with_transcript=0bp_to_NM_028189,uc009mer.2_5end | |||
|description=CAGE_peak_1_at_B3gnt3_5end | |||
|id=chr8:74225695..74225740,- | |||
|ontology_enrichment_celltype=CL:0002076!1.98e-09!15;CL:0002563!8.21e-07!9;CL:0002251!8.21e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.80e-11,15;CL:0000066,2.46e-08,25;CL:0002563,6.78e-08,9;CL:0002251,6.78e-08,9;CL:0000223,7.38e-08,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!1.65e-16!59;UBERON:0000160!1.63e-15!43;UBERON:0004119!5.45e-15!130;UBERON:0000925!5.45e-15!130;UBERON:0006595!5.45e-15!130;UBERON:0001007!3.61e-14!128;UBERON:0001555!3.61e-14!128;UBERON:0007026!3.61e-14!128;UBERON:0004921!2.58e-13!126;UBERON:0004185!2.58e-13!126;UBERON:0000344!7.42e-10!15;UBERON:0001242!5.54e-09!13;UBERON:0000060!5.54e-09!13;UBERON:0001262!5.54e-09!13;UBERON:0004786!5.54e-09!13;UBERON:0004923!1.40e-07!24;UBERON:0003350!8.21e-07!9;UBERON:0004808!8.21e-07!9;UBERON:0001277!8.21e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.92e-20,31;UBERON:0005409,5.17e-19,47;UBERON:0004119,3.45e-12,118;UBERON:0000925,3.45e-12,118;UBERON:0006595,3.45e-12,118;UBERON:0000344,1.48e-11,15;UBERON:0001007,2.31e-11,116;UBERON:0001555,2.31e-11,116;UBERON:0007026,2.31e-11,116;UBERON:0004921,1.65e-10,114;UBERON:0001242,1.66e-10,13;UBERON:0001262,1.66e-10,13;UBERON:0004786,1.66e-10,13;UBERON:0004923,2.14e-08,24;UBERON:0003350,6.78e-08,9;UBERON:0004808,6.78e-08,9;UBERON:0001277,6.78e-08,9 | |||
|phase1_expression=0,34.1995899486574,29.1199513209303,38.1104906246606,32.0573267165662,12.0873075776561,9.81173090501208,0,0.140788722151667,0,0,0,0.513602189793617,0.0874204024189974,0,0.202475267389826,0,0.788655413395594,0.822686601634433,0,0.850432901510698,0.0992909512008853,0,7.83962871687693,7.79991555628378,26.4146703492909,20.2458138194765,15.0829862880122,9.12112413390595,12.0974462284767,12.1951780860418,0,0,0,18.4865036640816,19.6156881523021,18.3752420636132,0.418531630736908,0,0.523523743973798,1.17646297606203,0,0,0,0,0,2.34717403304412,0.436050312760893,0.439372365468944,0.194429899074283,0.839918529752175,0,0.503347818173209,0.725362142011344,0,1.02903774414379,1.43266719969378,0,0,0,0,0,0.889294796111139,5.39939830368839,5.93319817540185,6.3943210345149,2.09720077362883,0.384218305321555,0,0,0,0,0,0.244981598429908,0.0958454710182364,0,0,0.383062014255563,0.153606533256243,0,0.0914876436024097,0,0,0,0,0,0.284743361598206,0,0.151452386666368,0,14.7830889237856,5.16254326188832,0,0,0.649776417447669,0,1.82577746171277,1.02258193546835,0.259786004602869,0.35333957451034,0,3.84979432242953,2.54805239706646,7.11066703153331,23.8140145112336,22.0423082963336,20.2209778005913,4.90990682791958,2.33044095282455,1.92974780784272,0.693941307064543,0.913396434936424,1.61430848079241,1.65794904607885,0.940709657085638,3.26733137457156,16.3148678704687,3.18118585223806,0,1.29413479957927,1.54589062922275,2.42437626567611,29.8226817948995,0,0.41889341362691,36.0194447844114,0.11981512450592,0,0.127070227073065,0,0,0,0.347648640384553,0,0.62336413367868,0,0.407357455401265,0.995255764880744,0.505445516867349,1.89397670297827,0.260240885925407,0,0.180062129805349,0.30140963567143,0.884474488967262,0.640568601424249,0.468508622798644,0.258703370739016,0.215567992932842,0.378212160335639,0.175951124163949,0,0.556094498451196,0.348252166522167,0.823128545631774,0,0,0,0,1.44988040774851,1.17263029990548,0.900310307305074,0.473489471170421,0.787056926989615,0.925602677324269,1.16266972375204,1.60964040839772,2.33530684734339,2.63295759861569,2.79084688934462,2.99954595319666,3.36259971078264,3.29325172936576,4.96563749413376,0.841159794256509,0.205809224758569,89.5434901886093,23.2716498663919,0.213288250535234,1.16118335930219,3.47942145569652,6.45387278794696,6.67134131534611,9.51128130562796,34.6406214927493,15.811099653505,10.5560787696113,9.35095418593409,14.0374142725766,30.5598598942435,26.5849801345874,29.273767168392,0,0.456994050438915,1.1270773567308,1.22190796707189,1.55161989734101,1.1221731182451,1.64414996523069,2.21415221969403,1.41298855057237,1.60416313098341,0.889357881261447,0.500535317148282,0.196558995113203,0.899448449539415,0.608580364165509,0.964708639009667,0.50925170356284,0.863088412352432,1.13494658742525,1.09824565275233,0,1.86070473834252,2.18426371180192,1.76805214562978,0.717589654087649,1.4473305640901,6.65111484599777,0.37898282354097,0.325929952884052,0.509235257325564,0.938760993154008,1.84256883185997,2.85652369063216,3.90267295715598,1.10344600874334,3.5434350343804,2.39182152986231,4.58817281204066,5.18054945597687,6.65385669474953,3.01582567878545,2.17562273527484,2.45882136509518,2.75936746304733,0.321101179975584,0.234423373184406,0,3.53459298086122,0,0,0,0,0,0,0,0,0,0.642642632843614,1.27746076687442,0.534196811001766,0.488660878060728,5.60898418106621,0,0.728341908464944,0.906970670894253,0.565815239267694,1.47650946440386,2.45948118355142,5.94385074286909,3.63533729477506,2.13898427030833,2.52829406348653,1.05418608574999,2.06271086496374,0.680879211507576,0.36012218806262,0.258717367565509,0.428674070063185,0.886701168211368,1.07021290561242,1.81003922662333,2.43571959291679,5.39744928546534,6.99045833850607,0.661585194164886,3.62749756471256,0.161464426695906,1.5078231232039,0.835606408021955,0.820704498725306,31.188449519394,0.370850604021019,0.512612642393558,1.23832120777933,0.185194527369712,0.565105371014073,0.27338845544205,0.228778173206523,0.849892149969277,0.979660166265606,0.276399947608848,35.3228128665592,0.632671987162271,1.82987520414164,3.99619761040665,4.59994251231831,6.33251434863915,6.74321731924104,8.92657321833628,17.275892170946,31.7556684564893,1.86401793926078,0,0.299033092087958,0.66183396182839,0.777804753376191,0.387479470433193,0.337912250981556,0.234714477291508,0.781226309063701,0.209718688851422,0,0.288030006257865,0.316011120628178,0.608175645870493,0.513554785824136,0.77952493786677,0.358053391334963,0.596044064343795,0.721172697119813,0.295379054349154,0.504832249740738,0.457240839929999,0.403304740547362,1.07203668813728,0.673482891482306,0.818138315270983,2.72076460338254,0.887943813496259,7.98453323824334,14.941730856403,3.28422309854724,11.4486310025221,9.89018771043231,6.85978813053011,3.51100472824754,0,0,0.572895513439397,0.171853182343688,0,0,0,0.45032120322422,0,0.51776031175182,0,0.399024873401031,0,0.486213434136588,0,0.367687016900028,0.44449345560323,1.23621034343337,0.962757628775446,1.01078884705519,1.267396499451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| |||
|short_description=p1@B3gnt3 | |||
}} | |||
Revision as of 16:03, 14 September 2013
| Short description: | p1@B3gnt3 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_B3gnt3_5end |
| Coexpression cluster: | MCL_coexpression_mm9:12 |
| Association with transcript: | 0bp_to_NM_028189, uc009mer.2_5end |
| EntrezGene: | B3gnt3 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endo-epithelial cell | 4.80e-11 | 15 |
| epithelial cell | 2.46e-08 | 25 |
| intestinal epithelial cell | 6.78e-08 | 9 |
| epithelial cell of alimentary canal | 6.78e-08 | 9 |
| endodermal cell | 7.38e-08 | 20 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 7.92e-20 | 31 |
| gastrointestinal system | 5.17e-19 | 47 |
| endoderm-derived structure | 3.45e-12 | 118 |
| endoderm | 3.45e-12 | 118 |
| presumptive endoderm | 3.45e-12 | 118 |
| mucosa | 1.48e-11 | 15 |
| digestive system | 2.31e-11 | 116 |
| digestive tract | 2.31e-11 | 116 |
| primitive gut | 2.31e-11 | 116 |
| subdivision of digestive tract | 1.65e-10 | 114 |
| intestinal mucosa | 1.66e-10 | 13 |
| wall of intestine | 1.66e-10 | 13 |
| gastrointestinal system mucosa | 1.66e-10 | 13 |
| organ component layer | 2.14e-08 | 24 |
| epithelium of mucosa | 6.78e-08 | 9 |
| gastrointestinal system epithelium | 6.78e-08 | 9 |
| intestinal epithelium | 6.78e-08 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
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