FFCP PHASE1:Mm9::chr2:119063247..119063260,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20732|HGNC=|MCL_coexpression_id=12|UniProt=Q9R097|association_with_transcript=-28bp_to_ENSMUST00000110817_5end|description=CAGE_peak_8_at_Spint1_5end|id=chr2:119063247..119063260,+|ontology_enrichment_celltype=CL:0002563!8.18e-07!9;CL:0002251!8.18e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,2.02e-09,9;CL:0002251,2.02e-09,9;CL:0000066,3.23e-09,25;CL:0002076,7.56e-09,15;CL:0000075,1.50e-08,7;CL:0000239,3.24e-08,6;CL:0000677,3.24e-08,6;CL:0000584,3.24e-08,6;CL:0000223,9.86e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!3.42e-25!43;UBERON:0005409!2.16e-24!59;UBERON:0004119!3.80e-18!130;UBERON:0000925!3.80e-18!130;UBERON:0006595!3.80e-18!130;UBERON:0001007!1.98e-17!128;UBERON:0001555!1.98e-17!128;UBERON:0007026!1.98e-17!128;UBERON:0004921!3.93e-16!126;UBERON:0004185!3.93e-16!126;UBERON:0000344!2.59e-11!15;UBERON:0002108!3.70e-10!16;UBERON:0001242!9.04e-10!13;UBERON:0000060!9.04e-10!13;UBERON:0001262!9.04e-10!13;UBERON:0004786!9.04e-10!13;UBERON:0001045!1.01e-07!13;UBERON:0004923!1.07e-07!24;UBERON:0001264!2.34e-07!12;UBERON:0003922!2.34e-07!12;UBERON:0002114!2.34e-07!12;UBERON:0003923!2.34e-07!12;UBERON:0003924!2.34e-07!12;UBERON:0003921!2.34e-07!12;UBERON:0000485!5.98e-07!11;UBERON:0003350!8.18e-07!9;UBERON:0004808!8.18e-07!9;UBERON:0001277!8.18e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.80e-25,31;UBERON:0005409,1.55e-24,47;UBERON:0000344,3.91e-16,15;UBERON:0001242,7.90e-14,13;UBERON:0001262,7.90e-14,13;UBERON:0004786,7.90e-14,13;UBERON:0004119,5.39e-13,118;UBERON:0000925,5.39e-13,118;UBERON:0006595,5.39e-13,118;UBERON:0001007,9.94e-13,116;UBERON:0001555,9.94e-13,116;UBERON:0007026,9.94e-13,116;UBERON:0004921,2.40e-11,114;UBERON:0004923,7.08e-11,24;UBERON:0003350,2.02e-09,9;UBERON:0004808,2.02e-09,9;UBERON:0001277,2.02e-09,9;UBERON:0007023,5.58e-09,51;UBERON:0001264,6.58e-09,12;UBERON:0000485,1.14e-08,11|phase1_expression=0.320297694209588,14.6569671208532,13.1949779422965,15.1232105653415,18.5331420080148,8.39396359559449,6.07392865548367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,12.7993938234725,13.3057383018959,12.6331032105304,9.47676391549965,12.4973314957816,17.29213117053,6.5527833737582,9.97787297948871,0,0,0,1.44425809875637,1.82858109894342,1.63335485009895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56276261003168,0.15279824777681,0,0,0,0.075726193333184,0,1.73918693221007,0,0,0,0,0,1.12355536105401,0,0,0,1.54927761754349,0,0,0,4.32982082022428,4.81383744402687,5.05524445014783,1.59857431606684,0,0,0,0.304465478312141,0,0,0,0,8.65182387070309,0,0,0,0,0,1.86391761218122,0,0,6.64188343542338,0,0,0,0,0,0,0.173824320192276,0,0,0,0,0.746441823660558,1.26361379216837,1.89397670297827,0,0,0,0.150704817835715,0.408218994907967,0,0,1.03481348295606,0,0,0,0.657587197282725,0.278047249225598,0.348252166522167,1.4404749548556,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0,0,14.5384264512871,5.81791246659797,0.213288250535234,0.464473343720877,1.41754207454303,2.01683524623343,1.55664630691409,3.04361001780095,4.74529061544512,4.94096864172033,5.27803938480566,5.37182474511107,3.31438948102504,10.7858329038507,7.13255564586491,6.77080329064848,0,0.456994050438915,0,0.407302655690628,0.193952487167626,0.841629838683823,1.3279672796094,2.36176236767363,0.784993639206874,1.60416313098341,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,2.40179147216586,0.189491411770485,0.325929952884052,0.509235257325564,0.234690248288502,0.335012514883631,1.19021820443007,2.53673742215138,0.157635144106191,0.221464689648775,0.318909537314974,0.983179888294428,1.20879487306127,0.723245292907558,0,0,2.45882136509518,2.48343071674259,0,0,0,0,0,0,0,0,0,0.283076530788832,0,0.292255857911312,0,0,0.141940085208269,0.178065603667255,0.325773918707152,0.989820737835213,9.2921596837974,0.971122544619926,2.41858845571801,2.45186603682668,2.36241514304618,2.76691633149535,4.9101375701962,1.81766864738753,3.56497378384721,4.42451461110142,4.21674434299995,6.18813259489121,1.70219802876894,0,0.388076051348264,0.857348140126369,0.709360934569094,0.178368817602071,0.493647061806363,0.304464949114599,0.469343416127421,2.33015277950202,2.20528398054962,1.15420377059036,1.77610869365496,1.5078231232039,1.79058516004705,2.79039529566604,6.41257840585672,0,0,0.206386867963223,0,0,0,0,0,0,0,7.63736494412091,0.158167996790568,1.01659733563424,1.18805874903981,1.46361807210128,2.62035076495413,2.02296519577231,2.14898984885873,3.14107130380836,4.79575401179634,1.86401793926078,0,0,0,0,0,0,0,0,0,0,0,0,1.41907650703115,0.616265742988964,0.25984164595559,0.179026695667481,0.39736270956253,0.120195449519969,0.295379054349154,0.302899349844443,0.381034033274999,0.201652370273681,0.292373642219257,0.384847366561318,0,3.17422537061296,1.99787358036658,0.269141569828427,2.18250001273302,6.76163579112667,2.064507229963,1.09890974560359,4.93047271881851,3.00943262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| ||
|EntrezGene=20732 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=Q9R097 | |||
|association_with_transcript=-28bp_to_ENSMUST00000110817_5end | |||
|description=CAGE_peak_8_at_Spint1_5end | |||
|id=chr2:119063247..119063260,+ | |||
|ontology_enrichment_celltype=CL:0002563!8.18e-07!9;CL:0002251!8.18e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.02e-09,9;CL:0002251,2.02e-09,9;CL:0000066,3.23e-09,25;CL:0002076,7.56e-09,15;CL:0000075,1.50e-08,7;CL:0000239,3.24e-08,6;CL:0000677,3.24e-08,6;CL:0000584,3.24e-08,6;CL:0000223,9.86e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.42e-25!43;UBERON:0005409!2.16e-24!59;UBERON:0004119!3.80e-18!130;UBERON:0000925!3.80e-18!130;UBERON:0006595!3.80e-18!130;UBERON:0001007!1.98e-17!128;UBERON:0001555!1.98e-17!128;UBERON:0007026!1.98e-17!128;UBERON:0004921!3.93e-16!126;UBERON:0004185!3.93e-16!126;UBERON:0000344!2.59e-11!15;UBERON:0002108!3.70e-10!16;UBERON:0001242!9.04e-10!13;UBERON:0000060!9.04e-10!13;UBERON:0001262!9.04e-10!13;UBERON:0004786!9.04e-10!13;UBERON:0001045!1.01e-07!13;UBERON:0004923!1.07e-07!24;UBERON:0001264!2.34e-07!12;UBERON:0003922!2.34e-07!12;UBERON:0002114!2.34e-07!12;UBERON:0003923!2.34e-07!12;UBERON:0003924!2.34e-07!12;UBERON:0003921!2.34e-07!12;UBERON:0000485!5.98e-07!11;UBERON:0003350!8.18e-07!9;UBERON:0004808!8.18e-07!9;UBERON:0001277!8.18e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.80e-25,31;UBERON:0005409,1.55e-24,47;UBERON:0000344,3.91e-16,15;UBERON:0001242,7.90e-14,13;UBERON:0001262,7.90e-14,13;UBERON:0004786,7.90e-14,13;UBERON:0004119,5.39e-13,118;UBERON:0000925,5.39e-13,118;UBERON:0006595,5.39e-13,118;UBERON:0001007,9.94e-13,116;UBERON:0001555,9.94e-13,116;UBERON:0007026,9.94e-13,116;UBERON:0004921,2.40e-11,114;UBERON:0004923,7.08e-11,24;UBERON:0003350,2.02e-09,9;UBERON:0004808,2.02e-09,9;UBERON:0001277,2.02e-09,9;UBERON:0007023,5.58e-09,51;UBERON:0001264,6.58e-09,12;UBERON:0000485,1.14e-08,11 | |||
|phase1_expression=0.320297694209588,14.6569671208532,13.1949779422965,15.1232105653415,18.5331420080148,8.39396359559449,6.07392865548367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,12.7993938234725,13.3057383018959,12.6331032105304,9.47676391549965,12.4973314957816,17.29213117053,6.5527833737582,9.97787297948871,0,0,0,1.44425809875637,1.82858109894342,1.63335485009895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56276261003168,0.15279824777681,0,0,0,0.075726193333184,0,1.73918693221007,0,0,0,0,0,1.12355536105401,0,0,0,1.54927761754349,0,0,0,4.32982082022428,4.81383744402687,5.05524445014783,1.59857431606684,0,0,0,0.304465478312141,0,0,0,0,8.65182387070309,0,0,0,0,0,1.86391761218122,0,0,6.64188343542338,0,0,0,0,0,0,0.173824320192276,0,0,0,0,0.746441823660558,1.26361379216837,1.89397670297827,0,0,0,0.150704817835715,0.408218994907967,0,0,1.03481348295606,0,0,0,0.657587197282725,0.278047249225598,0.348252166522167,1.4404749548556,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0,0,14.5384264512871,5.81791246659797,0.213288250535234,0.464473343720877,1.41754207454303,2.01683524623343,1.55664630691409,3.04361001780095,4.74529061544512,4.94096864172033,5.27803938480566,5.37182474511107,3.31438948102504,10.7858329038507,7.13255564586491,6.77080329064848,0,0.456994050438915,0,0.407302655690628,0.193952487167626,0.841629838683823,1.3279672796094,2.36176236767363,0.784993639206874,1.60416313098341,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,2.40179147216586,0.189491411770485,0.325929952884052,0.509235257325564,0.234690248288502,0.335012514883631,1.19021820443007,2.53673742215138,0.157635144106191,0.221464689648775,0.318909537314974,0.983179888294428,1.20879487306127,0.723245292907558,0,0,2.45882136509518,2.48343071674259,0,0,0,0,0,0,0,0,0,0.283076530788832,0,0.292255857911312,0,0,0.141940085208269,0.178065603667255,0.325773918707152,0.989820737835213,9.2921596837974,0.971122544619926,2.41858845571801,2.45186603682668,2.36241514304618,2.76691633149535,4.9101375701962,1.81766864738753,3.56497378384721,4.42451461110142,4.21674434299995,6.18813259489121,1.70219802876894,0,0.388076051348264,0.857348140126369,0.709360934569094,0.178368817602071,0.493647061806363,0.304464949114599,0.469343416127421,2.33015277950202,2.20528398054962,1.15420377059036,1.77610869365496,1.5078231232039,1.79058516004705,2.79039529566604,6.41257840585672,0,0,0.206386867963223,0,0,0,0,0,0,0,7.63736494412091,0.158167996790568,1.01659733563424,1.18805874903981,1.46361807210128,2.62035076495413,2.02296519577231,2.14898984885873,3.14107130380836,4.79575401179634,1.86401793926078,0,0,0,0,0,0,0,0,0,0,0,0,1.41907650703115,0.616265742988964,0.25984164595559,0.179026695667481,0.39736270956253,0.120195449519969,0.295379054349154,0.302899349844443,0.381034033274999,0.201652370273681,0.292373642219257,0.384847366561318,0,3.17422537061296,1.99787358036658,0.269141569828427,2.18250001273302,6.76163579112667,2.064507229963,1.09890974560359,4.93047271881851,3.00943262421218,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0,0,0,0.222246727801615,0.206035057238894,0.320919209591815,0.252697211763798,0,0.188626341386076,0.37456602987953,0.320125762024346,0.114870937911227,0,0.463537303779422,0,0,0.147198920134397,0.342869252385415,0.887379030796687,0.476872379894642,0.145346416632329,0.0941093804153306,0.423073039458382,0.548783918618318,0,0.543216455383447,0,0.355905054372522,0.29551344712669,0.409231043169689,0.154936841185966,0.385813221962283,1.24905288968973,0.935726433781634,0.214871054048298,0.57386499620653,1.10295709559758,0.231867835620421 | |||
|short_description=p8@Spint1 | |||
}} |
Revision as of 21:46, 13 September 2013
Short description: | p8@Spint1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Spint1_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -28bp_to_ENSMUST00000110817_5end |
EntrezGene: | Spint1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.02e-09 | 9 |
epithelial cell of alimentary canal | 2.02e-09 | 9 |
epithelial cell | 3.23e-09 | 25 |
endo-epithelial cell | 7.56e-09 | 15 |
columnar/cuboidal epithelial cell | 1.50e-08 | 7 |
brush border epithelial cell | 3.24e-08 | 6 |
gut absorptive cell | 3.24e-08 | 6 |
enterocyte | 3.24e-08 | 6 |
endodermal cell | 9.86e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 6.80e-25 | 31 |
gastrointestinal system | 1.55e-24 | 47 |
mucosa | 3.91e-16 | 15 |
intestinal mucosa | 7.90e-14 | 13 |
wall of intestine | 7.90e-14 | 13 |
gastrointestinal system mucosa | 7.90e-14 | 13 |
endoderm-derived structure | 5.39e-13 | 118 |
endoderm | 5.39e-13 | 118 |
presumptive endoderm | 5.39e-13 | 118 |
digestive system | 9.94e-13 | 116 |
digestive tract | 9.94e-13 | 116 |
primitive gut | 9.94e-13 | 116 |
subdivision of digestive tract | 2.40e-11 | 114 |
organ component layer | 7.08e-11 | 24 |
epithelium of mucosa | 2.02e-09 | 9 |
gastrointestinal system epithelium | 2.02e-09 | 9 |
intestinal epithelium | 2.02e-09 | 9 |
adult organism | 5.58e-09 | 51 |
pancreas | 6.58e-09 | 12 |
simple columnar epithelium | 1.14e-08 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.