FFCP PHASE1:Mm9::chr16:4037092..4037103,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13419|HGNC=|MCL_coexpression_id=12|UniProt=Q14BW6|association_with_transcript=0bp_to_ENSMUST00000125961,ENSMUST00000144792,uc007xzh.1,uc007xzi.1_5end|description=CAGE_peak_2_at_Dnase1_5end|id=chr16:4037092..4037103,+|ontology_enrichment_celltype=CL:0002563!1.26e-18!9;CL:0002251!1.26e-18!9;CL:0000075!1.48e-15!7;CL:0000239!5.11e-14!6;CL:0000677!5.11e-14!6;CL:0000212!5.11e-14!6;CL:0000584!5.11e-14!6;CL:0000066!1.66e-12!25;CL:0002076!1.90e-10!15;CL:0000473!2.66e-08!3;CL:0000627!2.66e-08!3;CL:0000682!2.66e-08!3;CL:0000223!2.14e-07!20|ontology_enrichment_celltype_v019_2=CL:0000239,2.68e-17,6;CL:0000677,2.68e-17,6;CL:0000584,2.68e-17,6;CL:0000075,9.94e-15,7;CL:0002563,2.68e-11,9;CL:0002251,2.68e-11,9;CL:0000682,4.44e-10,3;CL:0000066,3.45e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!9.11e-31!15;UBERON:0000160!1.20e-30!43;UBERON:0001242!1.59e-26!13;UBERON:0000060!1.59e-26!13;UBERON:0001262!1.59e-26!13;UBERON:0004786!1.59e-26!13;UBERON:0005409!1.58e-20!59;UBERON:0003350!1.26e-18!9;UBERON:0004808!1.26e-18!9;UBERON:0001277!1.26e-18!9;UBERON:0000485!3.64e-18!11;UBERON:0004923!8.37e-18!24;UBERON:0001007!2.00e-08!128;UBERON:0001555!2.00e-08!128;UBERON:0007026!2.00e-08!128;UBERON:0004119!3.45e-08!130;UBERON:0000925!3.45e-08!130;UBERON:0006595!3.45e-08!130;UBERON:0000331!2.80e-07!3;UBERON:0002116!2.80e-07!3;UBERON:0001204!2.80e-07!3;UBERON:0001168!2.80e-07!3;UBERON:0004921!5.82e-07!126;UBERON:0004185!5.82e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.19e-35,31;UBERON:0000344,1.76e-25,15;UBERON:0005409,1.61e-21,47;UBERON:0001242,1.88e-20,13;UBERON:0001262,1.88e-20,13;UBERON:0004786,1.88e-20,13;UBERON:0004923,5.83e-15,24;UBERON:0003350,2.68e-11,9;UBERON:0004808,2.68e-11,9;UBERON:0001277,2.68e-11,9;UBERON:0002108,4.60e-11,4;UBERON:0000485,4.10e-09,11;UBERON:0000331,8.63e-09,3;UBERON:0002116,8.63e-09,3;UBERON:0001204,8.63e-09,3;UBERON:0001168,8.63e-09,3;UBERON:0001007,9.29e-09,116;UBERON:0001555,9.29e-09,116;UBERON:0007026,9.29e-09,116;UBERON:0004119,1.60e-08,118;UBERON:0000925,1.60e-08,118;UBERON:0006595,1.60e-08,118;UBERON:0004921,4.82e-07,114;UBERON:0001962,8.14e-07,2;UBERON:0001961,8.14e-07,2;UBERON:0001744,8.14e-07,2|phase1_expression=0,27.9180326111489,28.6649520815408,36.2957053568196,34.0609096363516,6.37941233265181,10.2789561862031,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06155844543851,0,0,13.759348360233,17.2056960800378,36.7508457033613,36.1840076773623,29.3040876452809,4.75058548640935,32.5118867390311,5.54326276638262,0,0,0,0.288851619751275,0.831173226792462,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.00533194750986,0,0,0,0.422530259330042,0,0,0,0,0,0,7.65031994117702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.3274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.8513579321737,12.164726066523,0,0,0,0.201683524623343,0.22237804384487,0.190225626112559,13.2868137232463,2.14108641141214,1.25667604400135,1.79060824837036,1.75467678407208,13.4822911298133,14.0489732418551,10.5544874824815,0,0,0,0,0,0,0.0632365371242573,2.36176236767363,3.45397201251025,7.89741849099523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.41257840585672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.32008969630389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@Dnase1}} | ||
|EntrezGene=13419 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=Q14BW6 | |||
|association_with_transcript=0bp_to_ENSMUST00000125961,ENSMUST00000144792,uc007xzh.1,uc007xzi.1_5end | |||
|description=CAGE_peak_2_at_Dnase1_5end | |||
|id=chr16:4037092..4037103,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.26e-18!9;CL:0002251!1.26e-18!9;CL:0000075!1.48e-15!7;CL:0000239!5.11e-14!6;CL:0000677!5.11e-14!6;CL:0000212!5.11e-14!6;CL:0000584!5.11e-14!6;CL:0000066!1.66e-12!25;CL:0002076!1.90e-10!15;CL:0000473!2.66e-08!3;CL:0000627!2.66e-08!3;CL:0000682!2.66e-08!3;CL:0000223!2.14e-07!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.68e-17,6;CL:0000677,2.68e-17,6;CL:0000584,2.68e-17,6;CL:0000075,9.94e-15,7;CL:0002563,2.68e-11,9;CL:0002251,2.68e-11,9;CL:0000682,4.44e-10,3;CL:0000066,3.45e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!9.11e-31!15;UBERON:0000160!1.20e-30!43;UBERON:0001242!1.59e-26!13;UBERON:0000060!1.59e-26!13;UBERON:0001262!1.59e-26!13;UBERON:0004786!1.59e-26!13;UBERON:0005409!1.58e-20!59;UBERON:0003350!1.26e-18!9;UBERON:0004808!1.26e-18!9;UBERON:0001277!1.26e-18!9;UBERON:0000485!3.64e-18!11;UBERON:0004923!8.37e-18!24;UBERON:0001007!2.00e-08!128;UBERON:0001555!2.00e-08!128;UBERON:0007026!2.00e-08!128;UBERON:0004119!3.45e-08!130;UBERON:0000925!3.45e-08!130;UBERON:0006595!3.45e-08!130;UBERON:0000331!2.80e-07!3;UBERON:0002116!2.80e-07!3;UBERON:0001204!2.80e-07!3;UBERON:0001168!2.80e-07!3;UBERON:0004921!5.82e-07!126;UBERON:0004185!5.82e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.19e-35,31;UBERON:0000344,1.76e-25,15;UBERON:0005409,1.61e-21,47;UBERON:0001242,1.88e-20,13;UBERON:0001262,1.88e-20,13;UBERON:0004786,1.88e-20,13;UBERON:0004923,5.83e-15,24;UBERON:0003350,2.68e-11,9;UBERON:0004808,2.68e-11,9;UBERON:0001277,2.68e-11,9;UBERON:0002108,4.60e-11,4;UBERON:0000485,4.10e-09,11;UBERON:0000331,8.63e-09,3;UBERON:0002116,8.63e-09,3;UBERON:0001204,8.63e-09,3;UBERON:0001168,8.63e-09,3;UBERON:0001007,9.29e-09,116;UBERON:0001555,9.29e-09,116;UBERON:0007026,9.29e-09,116;UBERON:0004119,1.60e-08,118;UBERON:0000925,1.60e-08,118;UBERON:0006595,1.60e-08,118;UBERON:0004921,4.82e-07,114;UBERON:0001962,8.14e-07,2;UBERON:0001961,8.14e-07,2;UBERON:0001744,8.14e-07,2 | |||
|phase1_expression=0,27.9180326111489,28.6649520815408,36.2957053568196,34.0609096363516,6.37941233265181,10.2789561862031,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06155844543851,0,0,13.759348360233,17.2056960800378,36.7508457033613,36.1840076773623,29.3040876452809,4.75058548640935,32.5118867390311,5.54326276638262,0,0,0,0.288851619751275,0.831173226792462,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.00533194750986,0,0,0,0.422530259330042,0,0,0,0,0,0,7.65031994117702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.3274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.8513579321737,12.164726066523,0,0,0,0.201683524623343,0.22237804384487,0.190225626112559,13.2868137232463,2.14108641141214,1.25667604400135,1.79060824837036,1.75467678407208,13.4822911298133,14.0489732418551,10.5544874824815,0,0,0,0,0,0,0.0632365371242573,2.36176236767363,3.45397201251025,7.89741849099523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.41257840585672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.32008969630389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@Dnase1 | |||
}} |
Revision as of 12:40, 13 September 2013
Short description: | p2@Dnase1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Dnase1_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 0bp_to_ENSMUST00000125961, ENSMUST00000144792, uc007xzh.1, uc007xzi.1_5end |
EntrezGene: | Dnase1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.68e-17 | 6 |
gut absorptive cell | 2.68e-17 | 6 |
enterocyte | 2.68e-17 | 6 |
columnar/cuboidal epithelial cell | 9.94e-15 | 7 |
intestinal epithelial cell | 2.68e-11 | 9 |
epithelial cell of alimentary canal | 2.68e-11 | 9 |
M cell of gut | 4.44e-10 | 3 |
epithelial cell | 3.45e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 5.19e-35 | 31 |
mucosa | 1.76e-25 | 15 |
gastrointestinal system | 1.61e-21 | 47 |
intestinal mucosa | 1.88e-20 | 13 |
wall of intestine | 1.88e-20 | 13 |
gastrointestinal system mucosa | 1.88e-20 | 13 |
organ component layer | 5.83e-15 | 24 |
epithelium of mucosa | 2.68e-11 | 9 |
gastrointestinal system epithelium | 2.68e-11 | 9 |
intestinal epithelium | 2.68e-11 | 9 |
small intestine | 4.60e-11 | 4 |
simple columnar epithelium | 4.10e-09 | 11 |
ileal mucosa | 8.63e-09 | 3 |
ileum | 8.63e-09 | 3 |
mucosa of small intestine | 8.63e-09 | 3 |
wall of small intestine | 8.63e-09 | 3 |
digestive system | 9.29e-09 | 116 |
digestive tract | 9.29e-09 | 116 |
primitive gut | 9.29e-09 | 116 |
endoderm-derived structure | 1.60e-08 | 118 |
endoderm | 1.60e-08 | 118 |
presumptive endoderm | 1.60e-08 | 118 |
subdivision of digestive tract | 4.82e-07 | 114 |
gut-associated lymphoid tissue | 8.14e-07 | 2 |
mucosa-associated lymphoid tissue | 8.14e-07 | 2 |
lymphoid tissue | 8.14e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.