FFCP PHASE1:Mm9::chr11:58203770..58203793,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=149|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:58203770..58203793,+|id=chr11:58203770..58203793,+|ontology_enrichment_celltype=CL:0002563!2.11e-12!9;CL:0002251!2.11e-12!9;CL:0000239!8.12e-09!6;CL:0000677!8.12e-09!6;CL:0000212!8.12e-09!6;CL:0000584!8.12e-09!6;CL:0000075!2.01e-07!7|ontology_enrichment_celltype_v019_2=CL:0002563,1.03e-16,9;CL:0002251,1.03e-16,9;CL:0000239,1.05e-11,6;CL:0000677,1.05e-11,6;CL:0000584,1.05e-11,6;CL:0000075,6.17e-10,7;CL:0002076,2.29e-09,15;CL:0000066,3.82e-09,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!4.29e-30!59;UBERON:0000160!1.42e-28!43;UBERON:0000344!1.18e-20!15;UBERON:0001242!8.80e-18!13;UBERON:0000060!8.80e-18!13;UBERON:0001262!8.80e-18!13;UBERON:0004786!8.80e-18!13;UBERON:0004923!6.98e-13!24;UBERON:0003350!2.11e-12!9;UBERON:0004808!2.11e-12!9;UBERON:0001277!2.11e-12!9;UBERON:0001007!4.15e-11!128;UBERON:0001555!4.15e-11!128;UBERON:0007026!4.15e-11!128;UBERON:0004119!9.14e-11!130;UBERON:0000925!9.14e-11!130;UBERON:0006595!9.14e-11!130;UBERON:0000485!9.01e-10!11;UBERON:0004921!1.08e-09!126;UBERON:0004185!1.08e-09!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.89e-53,31;UBERON:0005409,1.02e-46,47;UBERON:0000344,2.83e-28,15;UBERON:0001242,3.01e-24,13;UBERON:0001262,3.01e-24,13;UBERON:0004786,3.01e-24,13;UBERON:0001007,9.14e-17,116;UBERON:0001555,9.14e-17,116;UBERON:0007026,9.14e-17,116;UBERON:0003350,1.03e-16,9;UBERON:0004808,1.03e-16,9;UBERON:0001277,1.03e-16,9;UBERON:0004119,2.42e-16,118;UBERON:0000925,2.42e-16,118;UBERON:0006595,2.42e-16,118;UBERON:0004923,2.57e-16,24;UBERON:0004921,1.26e-14,114;UBERON:0000485,2.27e-13,11;UBERON:0002108,1.73e-09,4;UBERON:0000331,2.41e-07,3;UBERON:0002116,2.41e-07,3;UBERON:0001204,2.41e-07,3;UBERON:0001168,2.41e-07,3|phase1_expression=0,1.04692622291808,2.72999543633722,2.41971369045464,3.00537437967808,1.6787927191189,2.80335168714631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.43974237497583,5.27641346454491,2.8711598205751,2.15380998079537,1.72376986148711,11.2113817479261,2.26827116783938,6.65191531965914,0,0,0,1.44425809875637,3.49092755252834,1.83752420636132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,4.22480354960522,0,0,0,0,0,0,0,0,0.494389935468748,0.144599356919912,0,0,0,0,46.5979403045305,0,0,21.4583926375217,0,0,0,0,0,0,0,0,0,0,0,1.11966273549084,8.33985102831127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31293148088659,2.3800550999719,0,0.232236671860439,1.67527699718721,2.62188582010345,1.33426826306922,1.14135375667535,17.5575752771469,3.78807595865225,4.77536896720512,6.56556357735798,7.40863531052657,35.0539569375146,30.6916030822066,21.3081162382173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164140899745061,20.4036585640896,0,0,0,0,0,0,0,0,0,0,13.3653886522116,0,0,0.432021363287205,0,0.87345025498471,1.21377911746339,1.73572257023205,2.35580347785627,42.1248663198327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0,0.320919209591815,0,0,0,0.0936415074698824,0,0,0,0.115884325944855,0,0,0,0,0.177475806159338,0,0,0.0941093804153306,0.169229215783353,0,0,0,0,0,0,0,0,0.385813221962283,0,0.467863216890817,1.71896843238639,0.57386499620653,0.220591419119515,0|short_description=p@chr11:58203770..58203793,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=149 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:58203770..58203793,+ | |||
|id=chr11:58203770..58203793,+ | |||
|ontology_enrichment_celltype=CL:0002563!2.11e-12!9;CL:0002251!2.11e-12!9;CL:0000239!8.12e-09!6;CL:0000677!8.12e-09!6;CL:0000212!8.12e-09!6;CL:0000584!8.12e-09!6;CL:0000075!2.01e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.03e-16,9;CL:0002251,1.03e-16,9;CL:0000239,1.05e-11,6;CL:0000677,1.05e-11,6;CL:0000584,1.05e-11,6;CL:0000075,6.17e-10,7;CL:0002076,2.29e-09,15;CL:0000066,3.82e-09,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!4.29e-30!59;UBERON:0000160!1.42e-28!43;UBERON:0000344!1.18e-20!15;UBERON:0001242!8.80e-18!13;UBERON:0000060!8.80e-18!13;UBERON:0001262!8.80e-18!13;UBERON:0004786!8.80e-18!13;UBERON:0004923!6.98e-13!24;UBERON:0003350!2.11e-12!9;UBERON:0004808!2.11e-12!9;UBERON:0001277!2.11e-12!9;UBERON:0001007!4.15e-11!128;UBERON:0001555!4.15e-11!128;UBERON:0007026!4.15e-11!128;UBERON:0004119!9.14e-11!130;UBERON:0000925!9.14e-11!130;UBERON:0006595!9.14e-11!130;UBERON:0000485!9.01e-10!11;UBERON:0004921!1.08e-09!126;UBERON:0004185!1.08e-09!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.89e-53,31;UBERON:0005409,1.02e-46,47;UBERON:0000344,2.83e-28,15;UBERON:0001242,3.01e-24,13;UBERON:0001262,3.01e-24,13;UBERON:0004786,3.01e-24,13;UBERON:0001007,9.14e-17,116;UBERON:0001555,9.14e-17,116;UBERON:0007026,9.14e-17,116;UBERON:0003350,1.03e-16,9;UBERON:0004808,1.03e-16,9;UBERON:0001277,1.03e-16,9;UBERON:0004119,2.42e-16,118;UBERON:0000925,2.42e-16,118;UBERON:0006595,2.42e-16,118;UBERON:0004923,2.57e-16,24;UBERON:0004921,1.26e-14,114;UBERON:0000485,2.27e-13,11;UBERON:0002108,1.73e-09,4;UBERON:0000331,2.41e-07,3;UBERON:0002116,2.41e-07,3;UBERON:0001204,2.41e-07,3;UBERON:0001168,2.41e-07,3 | |||
|phase1_expression=0,1.04692622291808,2.72999543633722,2.41971369045464,3.00537437967808,1.6787927191189,2.80335168714631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.43974237497583,5.27641346454491,2.8711598205751,2.15380998079537,1.72376986148711,11.2113817479261,2.26827116783938,6.65191531965914,0,0,0,1.44425809875637,3.49092755252834,1.83752420636132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,4.22480354960522,0,0,0,0,0,0,0,0,0.494389935468748,0.144599356919912,0,0,0,0,46.5979403045305,0,0,21.4583926375217,0,0,0,0,0,0,0,0,0,0,0,1.11966273549084,8.33985102831127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31293148088659,2.3800550999719,0,0.232236671860439,1.67527699718721,2.62188582010345,1.33426826306922,1.14135375667535,17.5575752771469,3.78807595865225,4.77536896720512,6.56556357735798,7.40863531052657,35.0539569375146,30.6916030822066,21.3081162382173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164140899745061,20.4036585640896,0,0,0,0,0,0,0,0,0,0,13.3653886522116,0,0,0.432021363287205,0,0.87345025498471,1.21377911746339,1.73572257023205,2.35580347785627,42.1248663198327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0,0.320919209591815,0,0,0,0.0936415074698824,0,0,0,0.115884325944855,0,0,0,0,0.177475806159338,0,0,0.0941093804153306,0.169229215783353,0,0,0,0,0,0,0,0,0.385813221962283,0,0.467863216890817,1.71896843238639,0.57386499620653,0.220591419119515,0 | |||
|short_description=p@chr11:58203770..58203793,+ | |||
}} |
Revision as of 20:07, 12 September 2013
Short description: | p@chr11:58203770..58203793, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:58203770..58203793, + |
Coexpression cluster: | MCL_coexpression_mm9:149 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.03e-16 | 9 |
epithelial cell of alimentary canal | 1.03e-16 | 9 |
brush border epithelial cell | 1.05e-11 | 6 |
gut absorptive cell | 1.05e-11 | 6 |
enterocyte | 1.05e-11 | 6 |
columnar/cuboidal epithelial cell | 6.17e-10 | 7 |
endo-epithelial cell | 2.29e-09 | 15 |
epithelial cell | 3.82e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.89e-53 | 31 |
gastrointestinal system | 1.02e-46 | 47 |
mucosa | 2.83e-28 | 15 |
intestinal mucosa | 3.01e-24 | 13 |
wall of intestine | 3.01e-24 | 13 |
gastrointestinal system mucosa | 3.01e-24 | 13 |
digestive system | 9.14e-17 | 116 |
digestive tract | 9.14e-17 | 116 |
primitive gut | 9.14e-17 | 116 |
epithelium of mucosa | 1.03e-16 | 9 |
gastrointestinal system epithelium | 1.03e-16 | 9 |
intestinal epithelium | 1.03e-16 | 9 |
endoderm-derived structure | 2.42e-16 | 118 |
endoderm | 2.42e-16 | 118 |
presumptive endoderm | 2.42e-16 | 118 |
organ component layer | 2.57e-16 | 24 |
subdivision of digestive tract | 1.26e-14 | 114 |
simple columnar epithelium | 2.27e-13 | 11 |
small intestine | 1.73e-09 | 4 |
ileal mucosa | 2.41e-07 | 3 |
ileum | 2.41e-07 | 3 |
mucosa of small intestine | 2.41e-07 | 3 |
wall of small intestine | 2.41e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.