FFCP PHASE1:Mm9::chr4:120189379..120189393,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=474|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:120189379..120189393,+|id=chr4:120189379..120189393,+|ontology_enrichment_celltype=CL:0002563!1.25e-09!9;CL:0002251!1.25e-09!9;CL:0002076!1.99e-09!15|ontology_enrichment_celltype_v019_2=CL:0002076,2.94e-16,15;CL:0002563,1.66e-15,9;CL:0002251,1.66e-15,9;CL:0000066,4.87e-12,25;CL:0000223,1.97e-11,20;CL:0000239,8.25e-10,6;CL:0000677,8.25e-10,6;CL:0000584,8.25e-10,6;CL:0000075,2.66e-08,7;CL:0002250,2.31e-07,3;CL:0000068,3.79e-07,3;CL:0002202,3.79e-07,3;CL:0000069,3.79e-07,3;CL:0002632,3.79e-07,3;CL:0002368,3.79e-07,3;CL:0000307,3.79e-07,3;CL:0000377,3.79e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!5.69e-20!59;UBERON:0000160!4.89e-16!43;UBERON:0000344!3.89e-15!15;UBERON:0001242!3.58e-13!13;UBERON:0000060!3.58e-13!13;UBERON:0001262!3.58e-13!13;UBERON:0004786!3.58e-13!13;UBERON:0004119!6.50e-12!130;UBERON:0000925!6.50e-12!130;UBERON:0006595!6.50e-12!130;UBERON:0001007!3.32e-11!128;UBERON:0001555!3.32e-11!128;UBERON:0007026!3.32e-11!128;UBERON:0004923!1.27e-10!24;UBERON:0004921!4.86e-10!126;UBERON:0004185!4.86e-10!126;UBERON:0003350!1.25e-09!9;UBERON:0004808!1.25e-09!9;UBERON:0001277!1.25e-09!9;UBERON:0000485!2.31e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.13e-44,47;UBERON:0000160,3.95e-40,31;UBERON:0000344,4.84e-25,15;UBERON:0001242,1.23e-21,13;UBERON:0001262,1.23e-21,13;UBERON:0004786,1.23e-21,13;UBERON:0001007,5.66e-20,116;UBERON:0001555,5.66e-20,116;UBERON:0007026,5.66e-20,116;UBERON:0004119,1.86e-19,118;UBERON:0000925,1.86e-19,118;UBERON:0006595,1.86e-19,118;UBERON:0004921,7.86e-18,114;UBERON:0003350,1.66e-15,9;UBERON:0004808,1.66e-15,9;UBERON:0001277,1.66e-15,9;UBERON:0004923,3.81e-14,24;UBERON:0000485,2.49e-12,11;UBERON:0002108,4.86e-08,4;UBERON:0003126,3.79e-07,3;UBERON:0001005,3.79e-07,3;UBERON:0007196,3.79e-07,3;UBERON:0001558,3.79e-07,3;UBERON:0000945,4.33e-07,16;UBERON:0010039,4.33e-07,16|phase1_expression=0,1.39590163055744,3.18499467572675,1.20985684522732,1.50268718983904,4.53274034162102,6.30754129607919,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,8.31960598525715,4.12936705920906,0,4.30761996159075,5.60225204983311,5.89072600314759,4.28451220591882,4.21287970245079,0,0,0,20.2196133825892,10.3065480122265,12.6585000882669,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,7.36069539438128,8.61423542615335,7.07734223020697,1.1418387971906,0,0.29688427812965,0,0.304465478312141,0.230615497256059,0,0,0,0.988779870937496,0,0,0,0,0,1.86391761218122,0,0,5.62005521458901,0,0,0,0,0,0,0,0,0,0,0,0,1.0108910337347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31293148088659,2.90895623329899,0,0,0.515469845288373,1.21010114774006,2.00140239460383,3.99473814836374,4.2707615539006,4.28217282282428,4.52403375840485,6.56556357735798,6.23885078781184,2.69645822596266,3.8904848977445,4.38110801159608,0,0,0,0.203651327845314,0,0,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.369506380333209,0,0,0,0,0,0.238043640886014,0,0.157635144106191,0,0,0.163863314715738,0.863424909329478,0.289298117163023,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,1.81467135269789,0,0,0,0,0,0,1.03371317267288,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,6.17479514553893,0,0.161464426695906,0.180938774784468,0.477489376012546,0.656563598980245,4.66369338607761,0,0,0,0,0,0,0,0,0,0,2.86401185404534,0.474503990371703,2.03319467126849,2.59212817972323,2.71814784818809,4.58561383866973,4.18079473792944,2.97552440611209,1.04702376793612,4.53652406521275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.579568782096571,1.12609485270709,3.29672923681077,0.857473516316263,4.01257683228291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.888986911206461,0.206035057238894,0.64183841918363,0.252697211763798,0.50695859978048,0.188626341386076,0.187283014939765,0.512201219238954,0.287177344778066,0,0.347652977834566,0.192909220463705,0,0.294397840268795,0,0.177475806159338,0.238436189947321,0.290692833264657,0.282328141245992,0.592302255241736,0.365855945745545,0.263069711437843,0,0,0.355905054372522,0,0,0.154936841185966,0,0,0.935726433781634,0,0,0,0|short_description=p@chr4:120189379..120189393,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=474 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:120189379..120189393,+ | |||
|id=chr4:120189379..120189393,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.25e-09!9;CL:0002251!1.25e-09!9;CL:0002076!1.99e-09!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.94e-16,15;CL:0002563,1.66e-15,9;CL:0002251,1.66e-15,9;CL:0000066,4.87e-12,25;CL:0000223,1.97e-11,20;CL:0000239,8.25e-10,6;CL:0000677,8.25e-10,6;CL:0000584,8.25e-10,6;CL:0000075,2.66e-08,7;CL:0002250,2.31e-07,3;CL:0000068,3.79e-07,3;CL:0002202,3.79e-07,3;CL:0000069,3.79e-07,3;CL:0002632,3.79e-07,3;CL:0002368,3.79e-07,3;CL:0000307,3.79e-07,3;CL:0000377,3.79e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!5.69e-20!59;UBERON:0000160!4.89e-16!43;UBERON:0000344!3.89e-15!15;UBERON:0001242!3.58e-13!13;UBERON:0000060!3.58e-13!13;UBERON:0001262!3.58e-13!13;UBERON:0004786!3.58e-13!13;UBERON:0004119!6.50e-12!130;UBERON:0000925!6.50e-12!130;UBERON:0006595!6.50e-12!130;UBERON:0001007!3.32e-11!128;UBERON:0001555!3.32e-11!128;UBERON:0007026!3.32e-11!128;UBERON:0004923!1.27e-10!24;UBERON:0004921!4.86e-10!126;UBERON:0004185!4.86e-10!126;UBERON:0003350!1.25e-09!9;UBERON:0004808!1.25e-09!9;UBERON:0001277!1.25e-09!9;UBERON:0000485!2.31e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.13e-44,47;UBERON:0000160,3.95e-40,31;UBERON:0000344,4.84e-25,15;UBERON:0001242,1.23e-21,13;UBERON:0001262,1.23e-21,13;UBERON:0004786,1.23e-21,13;UBERON:0001007,5.66e-20,116;UBERON:0001555,5.66e-20,116;UBERON:0007026,5.66e-20,116;UBERON:0004119,1.86e-19,118;UBERON:0000925,1.86e-19,118;UBERON:0006595,1.86e-19,118;UBERON:0004921,7.86e-18,114;UBERON:0003350,1.66e-15,9;UBERON:0004808,1.66e-15,9;UBERON:0001277,1.66e-15,9;UBERON:0004923,3.81e-14,24;UBERON:0000485,2.49e-12,11;UBERON:0002108,4.86e-08,4;UBERON:0003126,3.79e-07,3;UBERON:0001005,3.79e-07,3;UBERON:0007196,3.79e-07,3;UBERON:0001558,3.79e-07,3;UBERON:0000945,4.33e-07,16;UBERON:0010039,4.33e-07,16 | |||
|phase1_expression=0,1.39590163055744,3.18499467572675,1.20985684522732,1.50268718983904,4.53274034162102,6.30754129607919,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,8.31960598525715,4.12936705920906,0,4.30761996159075,5.60225204983311,5.89072600314759,4.28451220591882,4.21287970245079,0,0,0,20.2196133825892,10.3065480122265,12.6585000882669,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,7.36069539438128,8.61423542615335,7.07734223020697,1.1418387971906,0,0.29688427812965,0,0.304465478312141,0.230615497256059,0,0,0,0.988779870937496,0,0,0,0,0,1.86391761218122,0,0,5.62005521458901,0,0,0,0,0,0,0,0,0,0,0,0,1.0108910337347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31293148088659,2.90895623329899,0,0,0.515469845288373,1.21010114774006,2.00140239460383,3.99473814836374,4.2707615539006,4.28217282282428,4.52403375840485,6.56556357735798,6.23885078781184,2.69645822596266,3.8904848977445,4.38110801159608,0,0,0,0.203651327845314,0,0,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.369506380333209,0,0,0,0,0,0.238043640886014,0,0.157635144106191,0,0,0.163863314715738,0.863424909329478,0.289298117163023,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,1.81467135269789,0,0,0,0,0,0,1.03371317267288,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,6.17479514553893,0,0.161464426695906,0.180938774784468,0.477489376012546,0.656563598980245,4.66369338607761,0,0,0,0,0,0,0,0,0,0,2.86401185404534,0.474503990371703,2.03319467126849,2.59212817972323,2.71814784818809,4.58561383866973,4.18079473792944,2.97552440611209,1.04702376793612,4.53652406521275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.579568782096571,1.12609485270709,3.29672923681077,0.857473516316263,4.01257683228291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.888986911206461,0.206035057238894,0.64183841918363,0.252697211763798,0.50695859978048,0.188626341386076,0.187283014939765,0.512201219238954,0.287177344778066,0,0.347652977834566,0.192909220463705,0,0.294397840268795,0,0.177475806159338,0.238436189947321,0.290692833264657,0.282328141245992,0.592302255241736,0.365855945745545,0.263069711437843,0,0,0.355905054372522,0,0,0.154936841185966,0,0,0.935726433781634,0,0,0,0 | |||
|short_description=p@chr4:120189379..120189393,+ | |||
}} |
Revision as of 03:38, 14 September 2013
Short description: | p@chr4:120189379..120189393, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:120189379..120189393, + |
Coexpression cluster: | MCL_coexpression_mm9:474 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.94e-16 | 15 |
intestinal epithelial cell | 1.66e-15 | 9 |
epithelial cell of alimentary canal | 1.66e-15 | 9 |
epithelial cell | 4.87e-12 | 25 |
endodermal cell | 1.97e-11 | 20 |
brush border epithelial cell | 8.25e-10 | 6 |
gut absorptive cell | 8.25e-10 | 6 |
enterocyte | 8.25e-10 | 6 |
columnar/cuboidal epithelial cell | 2.66e-08 | 7 |
intestinal crypt stem cell | 2.31e-07 | 3 |
duct epithelial cell | 3.79e-07 | 3 |
epithelial cell of tracheobronchial tree | 3.79e-07 | 3 |
branched duct epithelial cell | 3.79e-07 | 3 |
epithelial cell of lower respiratory tract | 3.79e-07 | 3 |
respiratory epithelial cell | 3.79e-07 | 3 |
tracheal epithelial cell | 3.79e-07 | 3 |
tracheoblast | 3.79e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.13e-44 | 47 |
intestine | 3.95e-40 | 31 |
mucosa | 4.84e-25 | 15 |
intestinal mucosa | 1.23e-21 | 13 |
wall of intestine | 1.23e-21 | 13 |
gastrointestinal system mucosa | 1.23e-21 | 13 |
digestive system | 5.66e-20 | 116 |
digestive tract | 5.66e-20 | 116 |
primitive gut | 5.66e-20 | 116 |
endoderm-derived structure | 1.86e-19 | 118 |
endoderm | 1.86e-19 | 118 |
presumptive endoderm | 1.86e-19 | 118 |
subdivision of digestive tract | 7.86e-18 | 114 |
epithelium of mucosa | 1.66e-15 | 9 |
gastrointestinal system epithelium | 1.66e-15 | 9 |
intestinal epithelium | 1.66e-15 | 9 |
organ component layer | 3.81e-14 | 24 |
simple columnar epithelium | 2.49e-12 | 11 |
small intestine | 4.86e-08 | 4 |
trachea | 3.79e-07 | 3 |
respiratory airway | 3.79e-07 | 3 |
tracheobronchial tree | 3.79e-07 | 3 |
lower respiratory tract | 3.79e-07 | 3 |
stomach | 4.33e-07 | 16 |
food storage organ | 4.33e-07 | 16 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.