FFCP PHASE1:Mm9::chr1:107253057..107253093,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=320311|HGNC=|MCL_coexpression_id=401|UniProt=Q8BG47|association_with_transcript=193bp_to_ENSMUST00000058688,ENSMUST00000172299,NM_001160368,NM_178779,uc011wpy.1,uc011wpz.1_5end|description=CAGE_peak_2_at_Rnf152_5end|id=chr1:107253057..107253093,-|ontology_enrichment_celltype=CL:0000117!5.24e-16!23;CL:0000337!5.24e-16!23;CL:0000540!2.01e-15!33;CL:0000047!2.01e-15!33;CL:0000031!2.01e-15!33;CL:0000404!2.01e-15!33;CL:0000393!3.75e-11!39;CL:0000211!3.75e-11!39;CL:0000221!7.24e-10!44;CL:0000133!7.24e-10!44;CL:0002319!1.33e-09!43;CL:0000055!2.31e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.51e-29,23;CL:0000337,1.51e-29,23;CL:0000540,4.32e-20,33;CL:0000047,4.32e-20,33;CL:0000031,4.32e-20,33;CL:0000404,4.32e-20,33;CL:0000393,6.64e-16,39;CL:0000211,6.64e-16,39;CL:0002319,8.88e-14,43;CL:0000221,2.61e-13,44;CL:0000133,2.61e-13,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.84e-20!73;UBERON:0005743!9.84e-20!73;UBERON:0000073!2.22e-18!75;UBERON:0001016!2.22e-18!75;UBERON:0002020!2.45e-17!34;UBERON:0001049!1.91e-16!52;UBERON:0005068!1.91e-16!52;UBERON:0006241!1.91e-16!52;UBERON:0007135!1.91e-16!52;UBERON:0000955!8.72e-15!50;UBERON:0006238!8.72e-15!50;UBERON:0002616!2.10e-14!49;UBERON:0000033!7.25e-14!63;UBERON:0002791!1.11e-13!29;UBERON:0003528!1.11e-13!29;UBERON:0001893!1.11e-13!29;UBERON:0004121!2.62e-13!102;UBERON:0000924!2.62e-13!102;UBERON:0006601!2.62e-13!102;UBERON:0002346!2.75e-13!71;UBERON:0003075!2.75e-13!71;UBERON:0007284!2.75e-13!71;UBERON:0003080!2.13e-11!40;UBERON:0003056!2.73e-11!49;UBERON:0002780!8.10e-11!39;UBERON:0001890!8.10e-11!39;UBERON:0006240!8.10e-11!39;UBERON:0000956!6.86e-09!21;UBERON:0001869!6.86e-09!21;UBERON:0000203!6.86e-09!21;UBERON:0002619!4.85e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.18e-30,54;UBERON:0001049,1.43e-27,52;UBERON:0005068,1.43e-27,52;UBERON:0006241,1.43e-27,52;UBERON:0007135,1.43e-27,52;UBERON:0001017,1.65e-27,73;UBERON:0001016,1.90e-26,75;UBERON:0002020,1.75e-25,34;UBERON:0002346,6.43e-22,64;UBERON:0003075,6.43e-22,64;UBERON:0007284,6.43e-22,64;UBERON:0002616,7.41e-20,46;UBERON:0004121,1.58e-19,95;UBERON:0000924,1.58e-19,95;UBERON:0006601,1.58e-19,95;UBERON:0000955,2.99e-19,47;UBERON:0006238,2.99e-19,47;UBERON:0003528,1.78e-18,29;UBERON:0002791,1.78e-18,29;UBERON:0001893,1.78e-18,29;UBERON:0010371,6.45e-18,73;UBERON:0003080,2.74e-16,40;UBERON:0002780,3.35e-15,39;UBERON:0001890,3.35e-15,39;UBERON:0006240,3.35e-15,39;UBERON:0003056,3.04e-13,49;UBERON:0003076,8.46e-13,12;UBERON:0003057,8.46e-13,12;UBERON:0010314,4.14e-12,92;UBERON:0000956,6.85e-11,21;UBERON:0001869,6.85e-11,21;UBERON:0000203,6.85e-11,21;UBERON:0002240,3.54e-10,6;UBERON:0005174,3.54e-10,6;UBERON:0001137,3.54e-10,6;UBERON:0002420,2.28e-09,8;UBERON:0007245,2.28e-09,8;UBERON:0010009,2.28e-09,8;UBERON:0010011,2.28e-09,8;UBERON:0000454,2.28e-09,8;UBERON:0001948,5.28e-09,5;UBERON:0002315,5.28e-09,5;UBERON:0000025,1.47e-08,114;UBERON:0002619,1.80e-07,17;UBERON:0004111,2.24e-07,122;UBERON:0002021,2.44e-07,10;UBERON:0000411,2.44e-07,10;UBERON:0001950,2.44e-07,10|phase1_expression=0.480446541314382,0.348975407639361,0.454999239389536,0,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0.430761996159075,0,0,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,0.664938581433969,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0.972149495371417,0,0,0,0,0,0,0.286533439938757,0,9.1042407386819,10.0508286061686,10.775133859605,0,0,0,0,0,0.299600110518405,0,1.24427534770173,1.4850653216486,1.47227472945967,4.57041575046086,7.50953039235486,1.46988959057945,0.958454710182364,1.83843757322004,6.60695285996332,4.72443150915195,4.76180253094355,9.36392642884376,8.05091263701205,9.89735404057844,4.18774498502071,1.68828783009504,3.81995619442025,16.2045722010517,13.2405663143166,14.911955666024,0,0,0.289864488701678,0.860423876981386,0.679971333707751,0.539703191637817,0.649776417447669,1.34408066129201,0.561777680527007,0,0,0,0.704217098883403,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0,0.150722640552623,0.117588707135705,0,0,0.86759614151947,0,0,0,0,0,17.5668478206928,21.154117388159,1.02182822083437,0.11981512450592,0,0,3.74476598512057,0.915001205637253,2.89005009859588,1.39059456153821,2.04572365864264,3.94797284663164,2.75810147215188,0.305518091550949,0,0,0.631325567659422,0,0,0.180062129805349,0.60281927134286,0.680364991513279,0.2562274405697,0.655912071918102,1.81092359517311,0.215567992932842,0.189106080167819,0.527853372491847,0.43839146485515,0.278047249225598,0.348252166522167,0,0.59710280045548,0,0,0,0.207125772535502,0,0,0,0,0.308534225774757,0.232533944750408,0,0.116765342367169,0,0.164167464079095,0,0,0.219550115291051,0,0.630869845692382,3.08713837137853,1.32167513193519,0,0.213288250535234,0.232236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0.570676878337677,0,0.329397909448022,0.251335208800269,0.198956472041151,0.19496408711912,0,0.648414149624083,1.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| ||
|EntrezGene=320311 | |||
|HGNC= | |||
|MCL_coexpression_id=401 | |||
|UniProt=Q8BG47 | |||
|association_with_transcript=193bp_to_ENSMUST00000058688,ENSMUST00000172299,NM_001160368,NM_178779,uc011wpy.1,uc011wpz.1_5end | |||
|description=CAGE_peak_2_at_Rnf152_5end | |||
|id=chr1:107253057..107253093,- | |||
|ontology_enrichment_celltype=CL:0000117!5.24e-16!23;CL:0000337!5.24e-16!23;CL:0000540!2.01e-15!33;CL:0000047!2.01e-15!33;CL:0000031!2.01e-15!33;CL:0000404!2.01e-15!33;CL:0000393!3.75e-11!39;CL:0000211!3.75e-11!39;CL:0000221!7.24e-10!44;CL:0000133!7.24e-10!44;CL:0002319!1.33e-09!43;CL:0000055!2.31e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.51e-29,23;CL:0000337,1.51e-29,23;CL:0000540,4.32e-20,33;CL:0000047,4.32e-20,33;CL:0000031,4.32e-20,33;CL:0000404,4.32e-20,33;CL:0000393,6.64e-16,39;CL:0000211,6.64e-16,39;CL:0002319,8.88e-14,43;CL:0000221,2.61e-13,44;CL:0000133,2.61e-13,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.84e-20!73;UBERON:0005743!9.84e-20!73;UBERON:0000073!2.22e-18!75;UBERON:0001016!2.22e-18!75;UBERON:0002020!2.45e-17!34;UBERON:0001049!1.91e-16!52;UBERON:0005068!1.91e-16!52;UBERON:0006241!1.91e-16!52;UBERON:0007135!1.91e-16!52;UBERON:0000955!8.72e-15!50;UBERON:0006238!8.72e-15!50;UBERON:0002616!2.10e-14!49;UBERON:0000033!7.25e-14!63;UBERON:0002791!1.11e-13!29;UBERON:0003528!1.11e-13!29;UBERON:0001893!1.11e-13!29;UBERON:0004121!2.62e-13!102;UBERON:0000924!2.62e-13!102;UBERON:0006601!2.62e-13!102;UBERON:0002346!2.75e-13!71;UBERON:0003075!2.75e-13!71;UBERON:0007284!2.75e-13!71;UBERON:0003080!2.13e-11!40;UBERON:0003056!2.73e-11!49;UBERON:0002780!8.10e-11!39;UBERON:0001890!8.10e-11!39;UBERON:0006240!8.10e-11!39;UBERON:0000956!6.86e-09!21;UBERON:0001869!6.86e-09!21;UBERON:0000203!6.86e-09!21;UBERON:0002619!4.85e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.18e-30,54;UBERON:0001049,1.43e-27,52;UBERON:0005068,1.43e-27,52;UBERON:0006241,1.43e-27,52;UBERON:0007135,1.43e-27,52;UBERON:0001017,1.65e-27,73;UBERON:0001016,1.90e-26,75;UBERON:0002020,1.75e-25,34;UBERON:0002346,6.43e-22,64;UBERON:0003075,6.43e-22,64;UBERON:0007284,6.43e-22,64;UBERON:0002616,7.41e-20,46;UBERON:0004121,1.58e-19,95;UBERON:0000924,1.58e-19,95;UBERON:0006601,1.58e-19,95;UBERON:0000955,2.99e-19,47;UBERON:0006238,2.99e-19,47;UBERON:0003528,1.78e-18,29;UBERON:0002791,1.78e-18,29;UBERON:0001893,1.78e-18,29;UBERON:0010371,6.45e-18,73;UBERON:0003080,2.74e-16,40;UBERON:0002780,3.35e-15,39;UBERON:0001890,3.35e-15,39;UBERON:0006240,3.35e-15,39;UBERON:0003056,3.04e-13,49;UBERON:0003076,8.46e-13,12;UBERON:0003057,8.46e-13,12;UBERON:0010314,4.14e-12,92;UBERON:0000956,6.85e-11,21;UBERON:0001869,6.85e-11,21;UBERON:0000203,6.85e-11,21;UBERON:0002240,3.54e-10,6;UBERON:0005174,3.54e-10,6;UBERON:0001137,3.54e-10,6;UBERON:0002420,2.28e-09,8;UBERON:0007245,2.28e-09,8;UBERON:0010009,2.28e-09,8;UBERON:0010011,2.28e-09,8;UBERON:0000454,2.28e-09,8;UBERON:0001948,5.28e-09,5;UBERON:0002315,5.28e-09,5;UBERON:0000025,1.47e-08,114;UBERON:0002619,1.80e-07,17;UBERON:0004111,2.24e-07,122;UBERON:0002021,2.44e-07,10;UBERON:0000411,2.44e-07,10;UBERON:0001950,2.44e-07,10 | |||
|phase1_expression=0.480446541314382,0.348975407639361,0.454999239389536,0,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0.430761996159075,0,0,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,0.664938581433969,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0.972149495371417,0,0,0,0,0,0,0.286533439938757,0,9.1042407386819,10.0508286061686,10.775133859605,0,0,0,0,0,0.299600110518405,0,1.24427534770173,1.4850653216486,1.47227472945967,4.57041575046086,7.50953039235486,1.46988959057945,0.958454710182364,1.83843757322004,6.60695285996332,4.72443150915195,4.76180253094355,9.36392642884376,8.05091263701205,9.89735404057844,4.18774498502071,1.68828783009504,3.81995619442025,16.2045722010517,13.2405663143166,14.911955666024,0,0,0.289864488701678,0.860423876981386,0.679971333707751,0.539703191637817,0.649776417447669,1.34408066129201,0.561777680527007,0,0,0,0.704217098883403,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0,0.150722640552623,0.117588707135705,0,0,0.86759614151947,0,0,0,0,0,17.5668478206928,21.154117388159,1.02182822083437,0.11981512450592,0,0,3.74476598512057,0.915001205637253,2.89005009859588,1.39059456153821,2.04572365864264,3.94797284663164,2.75810147215188,0.305518091550949,0,0,0.631325567659422,0,0,0.180062129805349,0.60281927134286,0.680364991513279,0.2562274405697,0.655912071918102,1.81092359517311,0.215567992932842,0.189106080167819,0.527853372491847,0.43839146485515,0.278047249225598,0.348252166522167,0,0.59710280045548,0,0,0,0.207125772535502,0,0,0,0,0.308534225774757,0.232533944750408,0,0.116765342367169,0,0.164167464079095,0,0,0.219550115291051,0,0.630869845692382,3.08713837137853,1.32167513193519,0,0.213288250535234,0.232236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0.570676878337677,0,0.329397909448022,0.251335208800269,0.198956472041151,0.19496408711912,0,0.648414149624083,1.39398891278057,0,0,0,0.203651327845314,0.387904974335251,0.280543279561274,0.505892296994058,0.442830443938806,0.470996183524124,0.123397163921801,0.889357881261447,0,0,0.224862112384854,0.202860121388503,0.241177159752417,0,0,0.324270453550071,0.274561413188081,0,0,0,0.252578877947112,0.358794827043824,0,0,0.189491411770485,0.488894929326078,0.169745085775188,0.469380496577004,0,0,0,0.157635144106191,1.55025282754142,0.637819074629948,0,0.172684981865896,0,0,0,0,0,3.69266356971921,3.6335622843583,0,0,0.94652465824877,0,0.646270193198397,0.238968797952552,0.222798674082394,0.566153061577665,0.404810701674894,1.16902343164525,0.790575555893047,0.963963949265421,0,0.178065603667255,0.325773918707152,0,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0.900305470156551,0.129358683782755,0.428674070063185,0,0,0,0,0,0.21183207086382,0,0.32977250588296,0,0.120625849856312,0.119372344003136,0.492422699235184,0.291480836629851,2.59595422814714,0,0,0,0,0,0,0.169978429993855,0.139951452323658,0,0,0.158167996790568,0,0.216010681643603,0,0.436725127492355,0.674321731924103,0.247960367176008,0.26175594198403,1.29614973291793,0,0,0.149516546043979,0.330916980914195,0.194451188344048,0.129159823477731,0.168956125490778,0.58678619322877,0.5208175393758,0.629156066554265,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.386379188064381,0.187682475451182,0.183151624267265,0,0,2.25900737046827,2.30162618253588,1.14579102687879,1.20297227640581,0.685082519770642,1.5107877947794,1.35004500046361,1.35096360967266,0.453142408984205,3.10656187051092,0.415149390336707,0.798049746802062,0.682934423016537,0,1.04806581313991,1.83843508450014,1.11123363900808,1.23621034343337,0.962757628775446,0,0.760437899670719,1.32038438970253,0.936415074698824,0.832326981263301,0.861532034334199,1.42888107384922,0.927074607558844,0.964546102318525,0.412085900803307,0.735994600671987,0.685738504770831,0.70990322463735,1.43061713968393,0.581385666529314,1.50575008664529,1.4384483341585,0.365855945745545,0.526139422875686,2.03706170768793,1.12228454331548,0.830445126869219,1.28055827088233,0,0.77468420592983,1.15743966588685,2.74791635731741,1.40358965067245,0.429742108096597,1.14772999241306,0.220591419119515,0.695603506861264 | |||
|short_description=p2@Rnf152 | |||
}} |
Revision as of 18:31, 13 September 2013
Short description: | p2@Rnf152 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rnf152_5end |
Coexpression cluster: | MCL_coexpression_mm9:401 |
Association with transcript: | 193bp_to_ENSMUST00000058688, ENSMUST00000172299, NM_001160368, NM_178779, uc011wpy.1, uc011wpz.1_5end |
EntrezGene: | Rnf152 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.51e-29 | 23 |
neuroblast (sensu Vertebrata) | 1.51e-29 | 23 |
neuron | 4.32e-20 | 33 |
neuronal stem cell | 4.32e-20 | 33 |
neuroblast | 4.32e-20 | 33 |
electrically signaling cell | 4.32e-20 | 33 |
electrically responsive cell | 6.64e-16 | 39 |
electrically active cell | 6.64e-16 | 39 |
neural cell | 8.88e-14 | 43 |
ectodermal cell | 2.61e-13 | 44 |
neurectodermal cell | 2.61e-13 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.