FFCP PHASE1:Mm9::chr1:133421988..133422005,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14270|HGNC=|MCL_coexpression_id=367|UniProt=|association_with_transcript=164bp_to_uc011wrq.1_5end|description=CAGE_peak_14_at_Srgap2_5end|id=chr1:133421988..133422005,-|ontology_enrichment_celltype=CL:0000117!2.48e-13!23;CL:0000337!2.48e-13!23;CL:0000540!4.51e-11!33;CL:0000047!4.51e-11!33;CL:0000031!4.51e-11!33;CL:0000404!4.51e-11!33;CL:0000393!4.91e-11!39;CL:0000211!4.91e-11!39;CL:0000221!2.46e-08!44;CL:0000133!2.46e-08!44;CL:0002319!3.02e-08!43;CL:0000055!3.96e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.90e-36,23;CL:0000337,1.90e-36,23;CL:0000540,1.20e-24,33;CL:0000047,1.20e-24,33;CL:0000031,1.20e-24,33;CL:0000404,1.20e-24,33;CL:0002609,7.28e-24,6;CL:0000393,1.82e-20,39;CL:0000211,1.82e-20,39;CL:0002319,2.52e-18,43;CL:0000221,7.53e-18,44;CL:0000133,7.53e-18,44;CL:0002608,1.99e-13,3;CL:0002612,4.66e-13,3;CL:0002321,2.98e-10,70;CL:0000723,7.26e-10,91;CL:0000048,7.26e-10,91;CL:0002476,2.68e-09,2;CL:0000034,4.53e-09,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!4.85e-14!34;UBERON:0000073!5.64e-11!75;UBERON:0001016!5.64e-11!75;UBERON:0001049!7.35e-11!52;UBERON:0005068!7.35e-11!52;UBERON:0006241!7.35e-11!52;UBERON:0007135!7.35e-11!52;UBERON:0001017!1.47e-10!73;UBERON:0005743!1.47e-10!73;UBERON:0002791!1.72e-10!29;UBERON:0003528!1.72e-10!29;UBERON:0001893!1.72e-10!29;UBERON:0002616!4.40e-09!49;UBERON:0000955!1.15e-08!50;UBERON:0006238!1.15e-08!50;UBERON:0004121!1.42e-08!102;UBERON:0000924!1.42e-08!102;UBERON:0006601!1.42e-08!102;UBERON:0002346!1.46e-07!71;UBERON:0003075!1.46e-07!71;UBERON:0007284!1.46e-07!71;UBERON:0000956!2.02e-07!21;UBERON:0001869!2.02e-07!21;UBERON:0000203!2.02e-07!21;UBERON:0000033!6.27e-07!63;UBERON:0003080!7.23e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.97e-24,34;UBERON:0000073,1.50e-21,54;UBERON:0001049,5.88e-20,52;UBERON:0005068,5.88e-20,52;UBERON:0006241,5.88e-20,52;UBERON:0007135,5.88e-20,52;UBERON:0001017,2.97e-19,73;UBERON:0001016,1.18e-18,75;UBERON:0002346,1.14e-15,64;UBERON:0003075,1.14e-15,64;UBERON:0007284,1.14e-15,64;UBERON:0003528,4.10e-15,29;UBERON:0002791,4.10e-15,29;UBERON:0001893,4.10e-15,29;UBERON:0004121,4.75e-14,95;UBERON:0000924,4.75e-14,95;UBERON:0006601,4.75e-14,95;UBERON:0010371,2.24e-13,73;UBERON:0001948,3.12e-13,5;UBERON:0002315,3.12e-13,5;UBERON:0002257,4.66e-13,3;UBERON:0002616,6.86e-13,46;UBERON:0000955,1.44e-12,47;UBERON:0006238,1.44e-12,47;UBERON:0003076,3.86e-12,12;UBERON:0003057,3.86e-12,12;UBERON:0000956,2.24e-11,21;UBERON:0001869,2.24e-11,21;UBERON:0000203,2.24e-11,21;UBERON:0002240,4.70e-11,6;UBERON:0005174,4.70e-11,6;UBERON:0001137,4.70e-11,6;UBERON:0002780,8.99e-11,39;UBERON:0001890,8.99e-11,39;UBERON:0006240,8.99e-11,39;UBERON:0003080,1.86e-10,40;UBERON:0010314,5.36e-10,92;UBERON:0001954,7.42e-10,7;UBERON:0003022,7.42e-10,7;UBERON:0002421,7.42e-10,7;UBERON:0000349,7.42e-10,7;UBERON:0002600,7.42e-10,7;UBERON:0003056,3.34e-08,49;UBERON:0000369,9.19e-08,5;UBERON:0002435,9.19e-08,5;UBERON:0000204,9.19e-08,5;UBERON:0010082,9.19e-08,5;UBERON:0000025,1.75e-07,114;UBERON:0004111,8.59e-07,122|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0.171200729931206,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0.61506478758457,0,0,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0.58328969722285,0,0,0,0.725362142011344,0,0.257259436035947,0.286533439938757,0.515672092277442,1.82084814773638,1.5869729378161,0,0,0.889294796111139,0,0.988866362566974,0,0,0,1.55534418462716,1.21505344498522,1.05162480675691,0.571301968807607,1.10434270475807,2.32732518508413,1.91690942036473,3.67687514644008,1.10115880999389,0.255374676170375,0.614426133024974,1.31886287730194,0.823388792421687,1.04182674111352,0.279182999001381,0,0.15279824777681,1.47314292736834,2.13557521198654,3.35519002485541,0.075726193333184,0.302286240427142,0.579728977403356,0,0,0,0,0,0,0,0.259786004602869,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,0,0,0,0,0.23517741427141,0,0,0.144599356919912,0,0.161766849947409,0,0,0,3.80615036115011,5.44561437714983,0,0,0,0,0.599162557619291,0.915001205637253,4.02093926761166,0.347648640384553,0.511430914660661,0,0.648965052271031,0,0,0,0,0.260240885925407,0,0,0,0.272145996605311,0,0,0.258703370739016,0,0.189106080167819,0,0.219195732427575,0,0.348252166522167,0,0,0,0,0,0,0,0,0.23674473558521,0.196764231747404,0,0,0,0.116765342367169,0.329119699826961,0,0.243206428637567,0,0,0.134206418760372,0.210289948564127,1.64647379806855,0,0,0.213288250535234,0,0,0,0,0.380451252225118,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0,0,0,0.156998727841375,0.246794327843601,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0.372140947668503,0,0,0.179397413521912,0,0,0,0.325929952884052,0,0,0,0,0,0.472905432318573,0,0,0.163863314715738,0.172684981865896,0.433947175744535,3.01582567878545,1.63171705145613,0,0,0.481651769963376,0.117211686592203,0,0.252470927204373,0.315508219416257,0,0,0.477937595905104,0.445597348164788,0.283076530788832,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0.220528398054962,0.16488625294148,0.322928853391811,0.0603129249281559,0.238744688006273,0.492422699235184,0.291480836629851,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0.269728692769641,0,0,0,0,0,0.299033092087958,0.165458490457098,0.194451188344048,0,0.168956125490778,0,0,0.104859344425711,0,0,0,0,0.102710957164827,0,0.358053391334963,0,0,0,0,0,0.201652370273681,0,0,0,0,0,0,0.167884616364078,0,0,0,0,0,2.25900737046827,0.460325236507177,0,0.859265911718438,0.685082519770642,0,0.675022500231806,0,0.453142408984205,0,0,0.399024873401031,0.341467211508268,0.486213434136588,0.419226325255965,0,0.666740183404846,0.618105171716683,0.64183841918363,0,0.760437899670719,0.565879024158229,0.280924522409647,0.576226371643824,0.459483751644906,0.476293691283074,0.231768651889711,0,0.412085900803307,0.147198920134397,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.470546902076653,0.0846146078916765,0.182927972872773,0.263069711437843,0.407412341537585,0,0.355905054372522,0.0985044823755635,0,0,0.385813221962283,0.749431733813838,0.701794825336225,0.214871054048298,0.191288332068843,0,0|short_description=p14@Srgap2}} | ||
|EntrezGene=14270 | |||
|HGNC= | |||
|MCL_coexpression_id=367 | |||
|UniProt= | |||
|association_with_transcript=164bp_to_uc011wrq.1_5end | |||
|description=CAGE_peak_14_at_Srgap2_5end | |||
|id=chr1:133421988..133422005,- | |||
|ontology_enrichment_celltype=CL:0000117!2.48e-13!23;CL:0000337!2.48e-13!23;CL:0000540!4.51e-11!33;CL:0000047!4.51e-11!33;CL:0000031!4.51e-11!33;CL:0000404!4.51e-11!33;CL:0000393!4.91e-11!39;CL:0000211!4.91e-11!39;CL:0000221!2.46e-08!44;CL:0000133!2.46e-08!44;CL:0002319!3.02e-08!43;CL:0000055!3.96e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.90e-36,23;CL:0000337,1.90e-36,23;CL:0000540,1.20e-24,33;CL:0000047,1.20e-24,33;CL:0000031,1.20e-24,33;CL:0000404,1.20e-24,33;CL:0002609,7.28e-24,6;CL:0000393,1.82e-20,39;CL:0000211,1.82e-20,39;CL:0002319,2.52e-18,43;CL:0000221,7.53e-18,44;CL:0000133,7.53e-18,44;CL:0002608,1.99e-13,3;CL:0002612,4.66e-13,3;CL:0002321,2.98e-10,70;CL:0000723,7.26e-10,91;CL:0000048,7.26e-10,91;CL:0002476,2.68e-09,2;CL:0000034,4.53e-09,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!4.85e-14!34;UBERON:0000073!5.64e-11!75;UBERON:0001016!5.64e-11!75;UBERON:0001049!7.35e-11!52;UBERON:0005068!7.35e-11!52;UBERON:0006241!7.35e-11!52;UBERON:0007135!7.35e-11!52;UBERON:0001017!1.47e-10!73;UBERON:0005743!1.47e-10!73;UBERON:0002791!1.72e-10!29;UBERON:0003528!1.72e-10!29;UBERON:0001893!1.72e-10!29;UBERON:0002616!4.40e-09!49;UBERON:0000955!1.15e-08!50;UBERON:0006238!1.15e-08!50;UBERON:0004121!1.42e-08!102;UBERON:0000924!1.42e-08!102;UBERON:0006601!1.42e-08!102;UBERON:0002346!1.46e-07!71;UBERON:0003075!1.46e-07!71;UBERON:0007284!1.46e-07!71;UBERON:0000956!2.02e-07!21;UBERON:0001869!2.02e-07!21;UBERON:0000203!2.02e-07!21;UBERON:0000033!6.27e-07!63;UBERON:0003080!7.23e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.97e-24,34;UBERON:0000073,1.50e-21,54;UBERON:0001049,5.88e-20,52;UBERON:0005068,5.88e-20,52;UBERON:0006241,5.88e-20,52;UBERON:0007135,5.88e-20,52;UBERON:0001017,2.97e-19,73;UBERON:0001016,1.18e-18,75;UBERON:0002346,1.14e-15,64;UBERON:0003075,1.14e-15,64;UBERON:0007284,1.14e-15,64;UBERON:0003528,4.10e-15,29;UBERON:0002791,4.10e-15,29;UBERON:0001893,4.10e-15,29;UBERON:0004121,4.75e-14,95;UBERON:0000924,4.75e-14,95;UBERON:0006601,4.75e-14,95;UBERON:0010371,2.24e-13,73;UBERON:0001948,3.12e-13,5;UBERON:0002315,3.12e-13,5;UBERON:0002257,4.66e-13,3;UBERON:0002616,6.86e-13,46;UBERON:0000955,1.44e-12,47;UBERON:0006238,1.44e-12,47;UBERON:0003076,3.86e-12,12;UBERON:0003057,3.86e-12,12;UBERON:0000956,2.24e-11,21;UBERON:0001869,2.24e-11,21;UBERON:0000203,2.24e-11,21;UBERON:0002240,4.70e-11,6;UBERON:0005174,4.70e-11,6;UBERON:0001137,4.70e-11,6;UBERON:0002780,8.99e-11,39;UBERON:0001890,8.99e-11,39;UBERON:0006240,8.99e-11,39;UBERON:0003080,1.86e-10,40;UBERON:0010314,5.36e-10,92;UBERON:0001954,7.42e-10,7;UBERON:0003022,7.42e-10,7;UBERON:0002421,7.42e-10,7;UBERON:0000349,7.42e-10,7;UBERON:0002600,7.42e-10,7;UBERON:0003056,3.34e-08,49;UBERON:0000369,9.19e-08,5;UBERON:0002435,9.19e-08,5;UBERON:0000204,9.19e-08,5;UBERON:0010082,9.19e-08,5;UBERON:0000025,1.75e-07,114;UBERON:0004111,8.59e-07,122 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0.171200729931206,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0.61506478758457,0,0,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0.58328969722285,0,0,0,0.725362142011344,0,0.257259436035947,0.286533439938757,0.515672092277442,1.82084814773638,1.5869729378161,0,0,0.889294796111139,0,0.988866362566974,0,0,0,1.55534418462716,1.21505344498522,1.05162480675691,0.571301968807607,1.10434270475807,2.32732518508413,1.91690942036473,3.67687514644008,1.10115880999389,0.255374676170375,0.614426133024974,1.31886287730194,0.823388792421687,1.04182674111352,0.279182999001381,0,0.15279824777681,1.47314292736834,2.13557521198654,3.35519002485541,0.075726193333184,0.302286240427142,0.579728977403356,0,0,0,0,0,0,0,0.259786004602869,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,0,0,0,0,0.23517741427141,0,0,0.144599356919912,0,0.161766849947409,0,0,0,3.80615036115011,5.44561437714983,0,0,0,0,0.599162557619291,0.915001205637253,4.02093926761166,0.347648640384553,0.511430914660661,0,0.648965052271031,0,0,0,0,0.260240885925407,0,0,0,0.272145996605311,0,0,0.258703370739016,0,0.189106080167819,0,0.219195732427575,0,0.348252166522167,0,0,0,0,0,0,0,0,0.23674473558521,0.196764231747404,0,0,0,0.116765342367169,0.329119699826961,0,0.243206428637567,0,0,0.134206418760372,0.210289948564127,1.64647379806855,0,0,0.213288250535234,0,0,0,0,0.380451252225118,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0,0,0,0.156998727841375,0.246794327843601,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0.372140947668503,0,0,0.179397413521912,0,0,0,0.325929952884052,0,0,0,0,0,0.472905432318573,0,0,0.163863314715738,0.172684981865896,0.433947175744535,3.01582567878545,1.63171705145613,0,0,0.481651769963376,0.117211686592203,0,0.252470927204373,0.315508219416257,0,0,0.477937595905104,0.445597348164788,0.283076530788832,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0.220528398054962,0.16488625294148,0.322928853391811,0.0603129249281559,0.238744688006273,0.492422699235184,0.291480836629851,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0.269728692769641,0,0,0,0,0,0.299033092087958,0.165458490457098,0.194451188344048,0,0.168956125490778,0,0,0.104859344425711,0,0,0,0,0.102710957164827,0,0.358053391334963,0,0,0,0,0,0.201652370273681,0,0,0,0,0,0,0.167884616364078,0,0,0,0,0,2.25900737046827,0.460325236507177,0,0.859265911718438,0.685082519770642,0,0.675022500231806,0,0.453142408984205,0,0,0.399024873401031,0.341467211508268,0.486213434136588,0.419226325255965,0,0.666740183404846,0.618105171716683,0.64183841918363,0,0.760437899670719,0.565879024158229,0.280924522409647,0.576226371643824,0.459483751644906,0.476293691283074,0.231768651889711,0,0.412085900803307,0.147198920134397,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.470546902076653,0.0846146078916765,0.182927972872773,0.263069711437843,0.407412341537585,0,0.355905054372522,0.0985044823755635,0,0,0.385813221962283,0.749431733813838,0.701794825336225,0.214871054048298,0.191288332068843,0,0 | |||
|short_description=p14@Srgap2 | |||
}} |
Revision as of 18:47, 13 September 2013
Short description: | p14@Srgap2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_Srgap2_5end |
Coexpression cluster: | MCL_coexpression_mm9:367 |
Association with transcript: | 164bp_to_uc011wrq.1_5end |
EntrezGene: | Srgap2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.90e-36 | 23 |
neuroblast (sensu Vertebrata) | 1.90e-36 | 23 |
neuron | 1.20e-24 | 33 |
neuronal stem cell | 1.20e-24 | 33 |
neuroblast | 1.20e-24 | 33 |
electrically signaling cell | 1.20e-24 | 33 |
neuron of cerebral cortex | 7.28e-24 | 6 |
electrically responsive cell | 1.82e-20 | 39 |
electrically active cell | 1.82e-20 | 39 |
neural cell | 2.52e-18 | 43 |
ectodermal cell | 7.53e-18 | 44 |
neurectodermal cell | 7.53e-18 | 44 |
hippocampal neuron | 1.99e-13 | 3 |
neuron of the ventral spinal cord | 4.66e-13 | 3 |
embryonic cell | 2.98e-10 | 70 |
somatic stem cell | 7.26e-10 | 91 |
multi fate stem cell | 7.26e-10 | 91 |
bone marrow macrophage | 2.68e-09 | 2 |
stem cell | 4.53e-09 | 97 |
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Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.