FFCP PHASE1:Mm9::chr16:58523617..58523633,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=54613|HGNC=|MCL_coexpression_id=3059|UniProt=|association_with_transcript=32bp_to_ENSMUST00000149197_5end|description=CAGE_peak_5_at_St3gal6_5end|id=chr16:58523617..58523633,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002563,2.06e-07,9;CL:0002251,2.06e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!4.94e-10!43;UBERON:0000344!1.18e-09!15;UBERON:0001242!1.89e-08!13;UBERON:0000060!1.89e-08!13;UBERON:0001262!1.89e-08!13;UBERON:0004786!1.89e-08!13;UBERON:0005409!7.72e-08!59;UBERON:0004923!7.20e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0000344,6.34e-12,15;UBERON:0000160,2.56e-11,31;UBERON:0001242,2.19e-10,13;UBERON:0001262,2.19e-10,13;UBERON:0004786,2.19e-10,13;UBERON:0003350,2.06e-07,9;UBERON:0004808,2.06e-07,9;UBERON:0001277,2.06e-07,9;UBERON:0004923,9.24e-07,24|phase1_expression=0.160148847104794,3.83872948403297,5.91499011206397,10.8887116070459,5.50985302940982,5.37213670118047,5.13947809310157,0,0,0,0,0,0.342401459862411,0,1.66554880907831,1.01237633694913,0.699561878128147,0.315462165358238,0.274228867211478,0,2.04103896362567,0.198581902401771,0,5.11975752938901,7.11168771308227,2.8711598205751,3.01533397311352,6.03319451520489,5.51067916423484,6.80481350351813,3.54768817048488,0,0.61506478758457,0,2.59966457776147,2.82598897109437,4.08338712524738,0,0,0,0,0,0,0,0,0,0,0,0.878744730937887,0.58328969722285,0.279972843250725,1.43752564364972,0.167782606057736,0,0,0.514518872071894,0,2.57836046138721,0.404632921719196,0,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,1.15265491596466,0.207379224616955,0.540023753326763,0,0.285650984403804,0.662605622854841,0,0,0,0,0.893811366596314,0.768032666281217,0.263772575460388,0,0,0.837548997004143,1.12552522006336,1.37518422999129,0.294628585473668,0.284743361598206,0.186399445825301,0,0.0755715601067855,6.95674772884027,0.860423876981386,0,0,0,0.448026887097336,6.03911006566533,0,0,0,0,0,0,0,0,0,0.505524445014783,3.4255163915718,2.33044095282455,0.890652834388949,0,0,0.230615497256059,0,0.470354828542819,1.0053327306374,0.741584903203122,6.94076913215576,2.65383165584962,2.26473589926373,1.54589062922275,4.363877278217,0,1.17112318804619,0.83778682725382,2.04365644166873,0,0,0,2.09706895166752,1.83000241127451,0,1.73824320192276,0.255715457330331,0.41557608911912,0.324482526135515,0.916554274652847,2.61254638281195,0,1.47309299120532,0.390361328888111,0.229902104433473,0.360124259610698,0.30140963567143,0.544291993210623,0.2562274405697,0.0937017245597288,1.81092359517311,0.215567992932842,0.756424320671277,0.175951124163949,0,1.11218899690239,1.39300866608867,0.411564272815887,0,0,0,0,0.207125772535502,0.938104239924385,0.540186184383045,0.946978942340841,1.77087808572663,0.462801338662135,1.62773761325285,1.07309360559848,1.40118410840603,0.987359099480883,1.80584210487005,4.53985333456792,4.82459958503597,4.39100230582101,5.2340503316545,1.05144974282064,0.205809224758569,7.59963200862735,1.85115396664481,0.213288250535234,0,0.515469845288373,1.00841762311671,0.889512175379481,1.71203063501303,3.79623249235609,1.31759163779209,2.26201687920243,1.98956472041151,2.53453313254856,8.08937467788799,4.53889904736858,7.56736838366595,1.89667900953082,1.82797620175566,6.76246414038483,1.62921062276251,2.32742984601151,2.73529697572242,2.90888070771584,4.42830443938806,1.8839847340965,3.08492909804501,0.889357881261447,1.50160595144485,0.982794975566015,1.12431056192427,1.01430060694251,0.241177159752417,0.763877555344259,1.15078454980324,0.162135226775035,0.274561413188081,0,0,0.312037673114561,0,0.717589654087649,0.964887042726734,7.944387177164,0.757965647081939,0.977789858652155,0.339490171550376,1.17345124144251,2.34508760418542,4.04674189506223,3.12213836572478,5.51723004371669,6.42247599981447,6.218735977642,7.04612253277673,6.21665934717224,7.95569822198314,0,0,0.983528546038072,1.37968373152366,1.60550589987792,1.87538698547525,0,12.6235463602186,0,0,0,0.238968797952552,0,0,0,0,0,0.321321316421807,2.2710413633323,0.712262414669021,1.14020871547503,1.81467135269789,2.65490276679926,1.21390318077491,0.604647113929502,0.565815239267694,1.77181135728464,0.307435147943927,2.84271122485043,1.09060118843252,2.13898427030833,0.948110273807448,2.10837217149998,1.03135543248187,0.340439605753788,0.540183282093931,0.517434735131018,0,0.177340233642274,0.713475270408282,0,0.304464949114599,1.17335854031855,3.1774810629573,0.882113592219848,4.122156323537,1.61464426695906,0.784068024066026,0.596861720015682,0.656563598980245,2.04036585640896,3.52308073819968,0.341741761595705,0,0.555583582109135,0.753473828018764,0.683471138605126,0.686334519619568,0,0,0.138199973804424,1.90934123603023,0.474503990371703,0.813277868507395,0.432021363287205,0.627264888043406,0.218362563746178,0.269728692769641,1.65306911450672,2.35580347785627,0.648074866458964,0,0,0.747582730219894,0.496375471371293,0.972255941720238,0.129159823477731,0.844780627453891,0.7041434318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| ||
|EntrezGene=54613 | |||
|HGNC= | |||
|MCL_coexpression_id=3059 | |||
|UniProt= | |||
|association_with_transcript=32bp_to_ENSMUST00000149197_5end | |||
|description=CAGE_peak_5_at_St3gal6_5end | |||
|id=chr16:58523617..58523633,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.06e-07,9;CL:0002251,2.06e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.94e-10!43;UBERON:0000344!1.18e-09!15;UBERON:0001242!1.89e-08!13;UBERON:0000060!1.89e-08!13;UBERON:0001262!1.89e-08!13;UBERON:0004786!1.89e-08!13;UBERON:0005409!7.72e-08!59;UBERON:0004923!7.20e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,6.34e-12,15;UBERON:0000160,2.56e-11,31;UBERON:0001242,2.19e-10,13;UBERON:0001262,2.19e-10,13;UBERON:0004786,2.19e-10,13;UBERON:0003350,2.06e-07,9;UBERON:0004808,2.06e-07,9;UBERON:0001277,2.06e-07,9;UBERON:0004923,9.24e-07,24 | |||
|phase1_expression=0.160148847104794,3.83872948403297,5.91499011206397,10.8887116070459,5.50985302940982,5.37213670118047,5.13947809310157,0,0,0,0,0,0.342401459862411,0,1.66554880907831,1.01237633694913,0.699561878128147,0.315462165358238,0.274228867211478,0,2.04103896362567,0.198581902401771,0,5.11975752938901,7.11168771308227,2.8711598205751,3.01533397311352,6.03319451520489,5.51067916423484,6.80481350351813,3.54768817048488,0,0.61506478758457,0,2.59966457776147,2.82598897109437,4.08338712524738,0,0,0,0,0,0,0,0,0,0,0,0.878744730937887,0.58328969722285,0.279972843250725,1.43752564364972,0.167782606057736,0,0,0.514518872071894,0,2.57836046138721,0.404632921719196,0,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,1.15265491596466,0.207379224616955,0.540023753326763,0,0.285650984403804,0.662605622854841,0,0,0,0,0.893811366596314,0.768032666281217,0.263772575460388,0,0,0.837548997004143,1.12552522006336,1.37518422999129,0.294628585473668,0.284743361598206,0.186399445825301,0,0.0755715601067855,6.95674772884027,0.860423876981386,0,0,0,0.448026887097336,6.03911006566533,0,0,0,0,0,0,0,0,0,0.505524445014783,3.4255163915718,2.33044095282455,0.890652834388949,0,0,0.230615497256059,0,0.470354828542819,1.0053327306374,0.741584903203122,6.94076913215576,2.65383165584962,2.26473589926373,1.54589062922275,4.363877278217,0,1.17112318804619,0.83778682725382,2.04365644166873,0,0,0,2.09706895166752,1.83000241127451,0,1.73824320192276,0.255715457330331,0.41557608911912,0.324482526135515,0.916554274652847,2.61254638281195,0,1.47309299120532,0.390361328888111,0.229902104433473,0.360124259610698,0.30140963567143,0.544291993210623,0.2562274405697,0.0937017245597288,1.81092359517311,0.215567992932842,0.756424320671277,0.175951124163949,0,1.11218899690239,1.39300866608867,0.411564272815887,0,0,0,0,0.207125772535502,0.938104239924385,0.540186184383045,0.946978942340841,1.77087808572663,0.462801338662135,1.62773761325285,1.07309360559848,1.40118410840603,0.987359099480883,1.80584210487005,4.53985333456792,4.82459958503597,4.39100230582101,5.2340503316545,1.05144974282064,0.205809224758569,7.59963200862735,1.85115396664481,0.213288250535234,0,0.515469845288373,1.00841762311671,0.889512175379481,1.71203063501303,3.79623249235609,1.31759163779209,2.26201687920243,1.98956472041151,2.53453313254856,8.08937467788799,4.53889904736858,7.56736838366595,1.89667900953082,1.82797620175566,6.76246414038483,1.62921062276251,2.32742984601151,2.73529697572242,2.90888070771584,4.42830443938806,1.8839847340965,3.08492909804501,0.889357881261447,1.50160595144485,0.982794975566015,1.12431056192427,1.01430060694251,0.241177159752417,0.763877555344259,1.15078454980324,0.162135226775035,0.274561413188081,0,0,0.312037673114561,0,0.717589654087649,0.964887042726734,7.944387177164,0.757965647081939,0.977789858652155,0.339490171550376,1.17345124144251,2.34508760418542,4.04674189506223,3.12213836572478,5.51723004371669,6.42247599981447,6.218735977642,7.04612253277673,6.21665934717224,7.95569822198314,0,0,0.983528546038072,1.37968373152366,1.60550589987792,1.87538698547525,0,12.6235463602186,0,0,0,0.238968797952552,0,0,0,0,0,0.321321316421807,2.2710413633323,0.712262414669021,1.14020871547503,1.81467135269789,2.65490276679926,1.21390318077491,0.604647113929502,0.565815239267694,1.77181135728464,0.307435147943927,2.84271122485043,1.09060118843252,2.13898427030833,0.948110273807448,2.10837217149998,1.03135543248187,0.340439605753788,0.540183282093931,0.517434735131018,0,0.177340233642274,0.713475270408282,0,0.304464949114599,1.17335854031855,3.1774810629573,0.882113592219848,4.122156323537,1.61464426695906,0.784068024066026,0.596861720015682,0.656563598980245,2.04036585640896,3.52308073819968,0.341741761595705,0,0.555583582109135,0.753473828018764,0.683471138605126,0.686334519619568,0,0,0.138199973804424,1.90934123603023,0.474503990371703,0.813277868507395,0.432021363287205,0.627264888043406,0.218362563746178,0.269728692769641,1.65306911450672,2.35580347785627,0.648074866458964,0,0,0.747582730219894,0.496375471371293,0.972255941720238,0.129159823477731,0.844780627453891,0.704143431874524,1.43224823328345,2.09718688851422,1.44950472495604,3.45636007509439,1.26404448251271,0.202725215290164,0.924398614483445,0.51968329191118,0.537080087002444,0.993406773906324,0.721172697119813,0.295379054349154,0.302899349844443,0.533447646584999,0.302478555410522,0.779663045918019,0.481059208201647,1.05189211963412,7.48210265930198,0.221985953374065,0,0,1.15913756419314,2.43987218086537,1.28206136987086,0.643105137237198,0.501572104035363,0,0,0.572895513439397,0,0,0,0.675022500231806,0,0,0,0,0,0.170733605754134,0.243106717068294,0.628839487883947,1.2869045591501,1.33348036680969,2.26638562962784,0.962757628775446,1.01078884705519,1.01391719956096,1.32038438970253,0.842773567228942,1.08842759088278,1.26358031702349,0.476293691283074,1.39061191133827,1.35036454324594,0.824171801606613,1.32479028120958,0.342869252385415,2.48466128623072,0.953744759789284,1.3081177496909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| |||
|short_description=p5@St3gal6 | |||
}} | |||
Revision as of 12:57, 13 September 2013
| Short description: | p5@St3gal6 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_5_at_St3gal6_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3059 |
| Association with transcript: | 32bp_to_ENSMUST00000149197_5end |
| EntrezGene: | St3gal6 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 2.06e-07 | 9 |
| epithelial cell of alimentary canal | 2.06e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| mucosa | 6.34e-12 | 15 |
| intestine | 2.56e-11 | 31 |
| intestinal mucosa | 2.19e-10 | 13 |
| wall of intestine | 2.19e-10 | 13 |
| gastrointestinal system mucosa | 2.19e-10 | 13 |
| epithelium of mucosa | 2.06e-07 | 9 |
| gastrointestinal system epithelium | 2.06e-07 | 9 |
| intestinal epithelium | 2.06e-07 | 9 |
| organ component layer | 9.24e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
