FFCP PHASE1:Mm9::chr4:76096788..76096815,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=87|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:76096788..76096815,+|id=chr4:76096788..76096815,+|ontology_enrichment_celltype=CL:0000117!1.15e-10!23;CL:0000337!1.15e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.85e-08,23;CL:0000337,1.85e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!4.97e-17!71;UBERON:0003075!4.97e-17!71;UBERON:0007284!4.97e-17!71;UBERON:0003056!1.27e-14!49;UBERON:0000033!1.04e-13!63;UBERON:0001049!7.87e-13!52;UBERON:0005068!7.87e-13!52;UBERON:0006241!7.87e-13!52;UBERON:0007135!7.87e-13!52;UBERON:0004121!2.39e-11!102;UBERON:0000924!2.39e-11!102;UBERON:0006601!2.39e-11!102;UBERON:0002020!3.62e-11!34;UBERON:0001017!2.06e-10!73;UBERON:0005743!2.06e-10!73;UBERON:0000073!6.30e-10!75;UBERON:0001016!6.30e-10!75;UBERON:0002616!7.66e-10!49;UBERON:0000955!7.79e-10!50;UBERON:0006238!7.79e-10!50;UBERON:0003080!8.89e-10!40;UBERON:0002780!1.63e-09!39;UBERON:0001890!1.63e-09!39;UBERON:0006240!1.63e-09!39;UBERON:0002791!7.54e-08!29;UBERON:0003528!7.54e-08!29;UBERON:0001893!7.54e-08!29;UBERON:0000153!7.09e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.09e-13,64;UBERON:0003075,1.09e-13,64;UBERON:0007284,1.09e-13,64;UBERON:0003056,1.08e-11,49;UBERON:0010371,2.80e-11,73;UBERON:0010314,5.49e-10,92;UBERON:0000970,4.03e-09,9;UBERON:0000019,4.03e-09,9;UBERON:0000047,4.03e-09,9;UBERON:0010312,4.03e-09,9;UBERON:0004088,4.03e-09,9;UBERON:0002104,4.03e-09,9;UBERON:0001456,4.03e-09,9;UBERON:0003072,4.03e-09,9;UBERON:0004128,4.03e-09,9;UBERON:0003071,4.03e-09,9;UBERON:0001049,6.13e-09,52;UBERON:0005068,6.13e-09,52;UBERON:0006241,6.13e-09,52;UBERON:0007135,6.13e-09,52;UBERON:0004121,6.29e-09,95;UBERON:0000924,6.29e-09,95;UBERON:0006601,6.29e-09,95;UBERON:0000073,3.29e-08,54;UBERON:0002240,7.23e-08,6;UBERON:0005174,7.23e-08,6;UBERON:0001137,7.23e-08,6;UBERON:0002020,1.80e-07,34;UBERON:0000020,2.03e-07,12;UBERON:0001032,2.03e-07,12;UBERON:0004456,2.03e-07,12;UBERON:0001948,2.12e-07,5;UBERON:0002315,2.12e-07,5;UBERON:0001017,3.06e-07,73;UBERON:0001444,5.10e-07,11;UBERON:0001016,8.25e-07,75|phase1_expression=1.12104192973356,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0.166234645358492,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,5.46254444320914,7.93486468908049,5.70448263155561,0,0,0,0,0,0,0,1.24427534770173,0.810035629990144,0.630974884054146,6.28432165688368,6.62605622854841,1.22490799214954,0.575072826109418,0.919218786610021,1.10115880999389,0.766124028511126,0.614426133024974,6.4624280987795,7.41049913179518,6.25096044668112,0.279182999001381,0.56276261003168,1.37518422999129,13.258286346315,14.2371680799103,12.6751623161204,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0,0.742210695324124,1.04091196059682,0.304465478312141,0.230615497256059,0.60289056221049,0.117588707135705,0.628332956648377,0,0.144599356919912,0,0.161766849947409,1.10420759230197,0.969750506270444,0,0.292780797011547,0.41889341362691,0,0,0,0,1.04853447583376,0.915001205637253,3.14135880282161,1.21677024134594,0.511430914660661,2.90903262383384,2.43361894601636,0.509196819251581,0.622034853050465,0,1.68353484709179,1.17108398666433,2.29902104433473,2.52086981727489,2.71268672104287,2.65342346690179,4.99643509110914,3.84177070694888,2.58703370739016,1.5089759505299,2.26927296201383,2.81521798662318,2.19195732427575,0.834141747676794,0.348252166522167,0.411564272815887,0.796137067273973,0,0,0,1.03562886267751,1.17263029990548,1.2604344302271,1.18372367792605,0.787056926989615,1.07986979021165,0.465067889500816,0.536546802799238,0.817357396570186,0.16455984991348,0,0,0,0,0,1.89260953707715,3.70456604565424,0,0.264450566663544,1.2797295032114,0.696710015581316,0.128867461322093,0.403367049246685,0.444756087689741,0,0,0.164698954724011,0,0,0,0,0,0,2.65535061334314,0.571242563048644,0,0.407302655690628,0.581857461502877,0.0701358198903186,0.126473074248515,0,0,0,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08440552947533,0.814824882210129,0.848725428875941,0,0,0.714130922658041,0,0.315270288212382,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,1.44495530989013,0.937693492737625,0,0.252470927204373,0,0,0.215423397732799,0,0,0,0.404810701674894,0,0,0.321321316421807,9.22610553853746,0.890328018336276,1.14020871547503,0.329940245945071,0,0.728341908464944,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0.36012218806262,1.4229455216103,3.00071849044229,0.709360934569094,1.78368817602071,1.15184314421485,0,0,0,0,0,0.161464426695906,0,0,0,0,1.48340241608408,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,1.89801596148681,0.406638934253697,0.324016022465404,0,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,1.19613236835183,0.992750942742586,0.583353565032143,1.03327858782185,1.01373675294467,1.05621514781179,0.65102192421975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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:76096788..76096815,+ | |||
|id=chr4:76096788..76096815,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.15e-10!23;CL:0000337!1.15e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.85e-08,23;CL:0000337,1.85e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!4.97e-17!71;UBERON:0003075!4.97e-17!71;UBERON:0007284!4.97e-17!71;UBERON:0003056!1.27e-14!49;UBERON:0000033!1.04e-13!63;UBERON:0001049!7.87e-13!52;UBERON:0005068!7.87e-13!52;UBERON:0006241!7.87e-13!52;UBERON:0007135!7.87e-13!52;UBERON:0004121!2.39e-11!102;UBERON:0000924!2.39e-11!102;UBERON:0006601!2.39e-11!102;UBERON:0002020!3.62e-11!34;UBERON:0001017!2.06e-10!73;UBERON:0005743!2.06e-10!73;UBERON:0000073!6.30e-10!75;UBERON:0001016!6.30e-10!75;UBERON:0002616!7.66e-10!49;UBERON:0000955!7.79e-10!50;UBERON:0006238!7.79e-10!50;UBERON:0003080!8.89e-10!40;UBERON:0002780!1.63e-09!39;UBERON:0001890!1.63e-09!39;UBERON:0006240!1.63e-09!39;UBERON:0002791!7.54e-08!29;UBERON:0003528!7.54e-08!29;UBERON:0001893!7.54e-08!29;UBERON:0000153!7.09e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.09e-13,64;UBERON:0003075,1.09e-13,64;UBERON:0007284,1.09e-13,64;UBERON:0003056,1.08e-11,49;UBERON:0010371,2.80e-11,73;UBERON:0010314,5.49e-10,92;UBERON:0000970,4.03e-09,9;UBERON:0000019,4.03e-09,9;UBERON:0000047,4.03e-09,9;UBERON:0010312,4.03e-09,9;UBERON:0004088,4.03e-09,9;UBERON:0002104,4.03e-09,9;UBERON:0001456,4.03e-09,9;UBERON:0003072,4.03e-09,9;UBERON:0004128,4.03e-09,9;UBERON:0003071,4.03e-09,9;UBERON:0001049,6.13e-09,52;UBERON:0005068,6.13e-09,52;UBERON:0006241,6.13e-09,52;UBERON:0007135,6.13e-09,52;UBERON:0004121,6.29e-09,95;UBERON:0000924,6.29e-09,95;UBERON:0006601,6.29e-09,95;UBERON:0000073,3.29e-08,54;UBERON:0002240,7.23e-08,6;UBERON:0005174,7.23e-08,6;UBERON:0001137,7.23e-08,6;UBERON:0002020,1.80e-07,34;UBERON:0000020,2.03e-07,12;UBERON:0001032,2.03e-07,12;UBERON:0004456,2.03e-07,12;UBERON:0001948,2.12e-07,5;UBERON:0002315,2.12e-07,5;UBERON:0001017,3.06e-07,73;UBERON:0001444,5.10e-07,11;UBERON:0001016,8.25e-07,75 | |||
|phase1_expression=1.12104192973356,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0.166234645358492,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,5.46254444320914,7.93486468908049,5.70448263155561,0,0,0,0,0,0,0,1.24427534770173,0.810035629990144,0.630974884054146,6.28432165688368,6.62605622854841,1.22490799214954,0.575072826109418,0.919218786610021,1.10115880999389,0.766124028511126,0.614426133024974,6.4624280987795,7.41049913179518,6.25096044668112,0.279182999001381,0.56276261003168,1.37518422999129,13.258286346315,14.2371680799103,12.6751623161204,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0,0.742210695324124,1.04091196059682,0.304465478312141,0.230615497256059,0.60289056221049,0.117588707135705,0.628332956648377,0,0.144599356919912,0,0.161766849947409,1.10420759230197,0.969750506270444,0,0.292780797011547,0.41889341362691,0,0,0,0,1.04853447583376,0.915001205637253,3.14135880282161,1.21677024134594,0.511430914660661,2.90903262383384,2.43361894601636,0.509196819251581,0.622034853050465,0,1.68353484709179,1.17108398666433,2.29902104433473,2.52086981727489,2.71268672104287,2.65342346690179,4.99643509110914,3.84177070694888,2.58703370739016,1.5089759505299,2.26927296201383,2.81521798662318,2.19195732427575,0.834141747676794,0.348252166522167,0.411564272815887,0.796137067273973,0,0,0,1.03562886267751,1.17263029990548,1.2604344302271,1.18372367792605,0.787056926989615,1.07986979021165,0.465067889500816,0.536546802799238,0.817357396570186,0.16455984991348,0,0,0,0,0,1.89260953707715,3.70456604565424,0,0.264450566663544,1.2797295032114,0.696710015581316,0.128867461322093,0.403367049246685,0.444756087689741,0,0,0.164698954724011,0,0,0,0,0,0,2.65535061334314,0.571242563048644,0,0.407302655690628,0.581857461502877,0.0701358198903186,0.126473074248515,0,0,0,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08440552947533,0.814824882210129,0.848725428875941,0,0,0.714130922658041,0,0.315270288212382,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,1.44495530989013,0.937693492737625,0,0.252470927204373,0,0,0.215423397732799,0,0,0,0.404810701674894,0,0,0.321321316421807,9.22610553853746,0.890328018336276,1.14020871547503,0.329940245945071,0,0.728341908464944,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0.36012218806262,1.4229455216103,3.00071849044229,0.709360934569094,1.78368817602071,1.15184314421485,0,0,0,0,0,0.161464426695906,0,0,0,0,1.48340241608408,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,1.89801596148681,0.406638934253697,0.324016022465404,0,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,1.19613236835183,0.992750942742586,0.583353565032143,1.03327858782185,1.01373675294467,1.05621514781179,0.651021924219751,0,0,0,0,0.810900861160657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.84130094602871,4.01026859407578,1.54667864109319,0.685082519770642,0.755393897389701,0.675022500231806,0.45032120322422,0.906284817968409,0,1.764384908931,3.59122386060928,1.36586884603307,1.94485373654635,2.30574478890781,0.551530525350042,1.55572709461131,1.23621034343337,0.64183841918363,2.52697211763797,1.77435509923168,1.50901073108861,1.96647165686753,1.85672941974121,1.78049953762401,3.33405583898152,0.927074607558844,1.92909220463705,0.412085900803307,1.76638704161277,1.71434626192708,1.77475806159337,1.90748951957857,1.16277133305863,1.69396884747595,1.86152137361688,1.09756783723664,0.526139422875686,2.44447404922551,1.68342681497322,0.711810108745045,1.57607171800902,1.22769312950907,1.23949472948773,1.15743966588685,3.99696924700713,2.33931608445408,1.50409737833809,0.956441660344217,0.661774257358546,0.695603506861264 | |||
|short_description=p@chr4:76096788..76096815,+ | |||
}} |
Revision as of 05:26, 14 September 2013
Short description: | p@chr4:76096788..76096815, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:76096788..76096815, + |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.85e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.85e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.09e-13 | 64 |
neural plate | 1.09e-13 | 64 |
presumptive neural plate | 1.09e-13 | 64 |
pre-chordal neural plate | 1.08e-11 | 49 |
ecto-epithelium | 2.80e-11 | 73 |
structure with developmental contribution from neural crest | 5.49e-10 | 92 |
eye | 4.03e-09 | 9 |
camera-type eye | 4.03e-09 | 9 |
simple eye | 4.03e-09 | 9 |
immature eye | 4.03e-09 | 9 |
ocular region | 4.03e-09 | 9 |
visual system | 4.03e-09 | 9 |
face | 4.03e-09 | 9 |
optic cup | 4.03e-09 | 9 |
optic vesicle | 4.03e-09 | 9 |
eye primordium | 4.03e-09 | 9 |
neural tube | 6.13e-09 | 52 |
neural rod | 6.13e-09 | 52 |
future spinal cord | 6.13e-09 | 52 |
neural keel | 6.13e-09 | 52 |
ectoderm-derived structure | 6.29e-09 | 95 |
ectoderm | 6.29e-09 | 95 |
presumptive ectoderm | 6.29e-09 | 95 |
regional part of nervous system | 3.29e-08 | 54 |
spinal cord | 7.23e-08 | 6 |
dorsal region element | 7.23e-08 | 6 |
dorsum | 7.23e-08 | 6 |
gray matter | 1.80e-07 | 34 |
sense organ | 2.03e-07 | 12 |
sensory system | 2.03e-07 | 12 |
entire sense organ system | 2.03e-07 | 12 |
regional part of spinal cord | 2.12e-07 | 5 |
gray matter of spinal cord | 2.12e-07 | 5 |
central nervous system | 3.06e-07 | 73 |
subdivision of head | 5.10e-07 | 11 |
nervous system | 8.25e-07 | 75 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.