FFCP PHASE1:Mm9::chr2:32753396..32753403,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1438|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:32753396..32753403,+|id=chr2:32753396..32753403,+|ontology_enrichment_celltype=CL:0002563!2.14e-13!9;CL:0002251!2.14e-13!9;CL:0000066!2.01e-12!25;CL:0000239!8.29e-11!6;CL:0000677!8.29e-11!6;CL:0000212!8.29e-11!6;CL:0000584!8.29e-11!6;CL:0002076!9.33e-10!15;CL:0000075!3.42e-09!7;CL:0000223!8.22e-09!20;CL:0000473!1.21e-08!3;CL:0000627!1.21e-08!3;CL:0000682!1.21e-08!3;CL:0000063!6.72e-07!66|ontology_enrichment_celltype_v019_2=CL:0002563,7.29e-32,9;CL:0002251,7.29e-32,9;CL:0000066,2.48e-31,25;CL:0000682,6.49e-25,3;CL:0000239,5.03e-22,6;CL:0000677,5.03e-22,6;CL:0000584,5.03e-22,6;CL:0000223,3.30e-19,20;CL:0002076,4.11e-19,15;CL:0000075,6.12e-19,7;CL:0002250,2.23e-11,3;CL:0000473,4.60e-11,7;CL:0000213,5.27e-09,1;CL:0002078,5.27e-09,1;CL:0000115,5.27e-09,1;CL:0002262,5.27e-09,1;CL:1000398,5.27e-09,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!2.15e-18!15;UBERON:0001242!2.49e-14!13;UBERON:0000060!2.49e-14!13;UBERON:0001262!2.49e-14!13;UBERON:0004786!2.49e-14!13;UBERON:0003350!2.14e-13!9;UBERON:0004808!2.14e-13!9;UBERON:0001277!2.14e-13!9;UBERON:0004923!1.84e-12!24;UBERON:0000485!9.72e-11!11;UBERON:0000064!3.28e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0003350,7.29e-32,9;UBERON:0004808,7.29e-32,9;UBERON:0001277,7.29e-32,9;UBERON:0000485,4.48e-26,11;UBERON:0000344,9.32e-26,15;UBERON:0001242,4.63e-22,13;UBERON:0001262,4.63e-22,13;UBERON:0004786,4.63e-22,13;UBERON:0004923,5.23e-16,24;UBERON:0000160,3.58e-09,31;UBERON:0003199,3.65e-09,1;UBERON:0002394,5.27e-09,1;UBERON:0001281,5.27e-09,1;UBERON:0000353,5.27e-09,1;UBERON:0003497,5.27e-09,1;UBERON:0003909,5.27e-09,1;UBERON:0003928,5.27e-09,1;UBERON:0003835,5.27e-09,1;UBERON:0003513,5.27e-09,1;UBERON:0001280,5.27e-09,1;UBERON:0004647,5.27e-09,1;UBERON:0002294,5.27e-09,1;UBERON:0001173,5.27e-09,1;UBERON:0004912,5.27e-09,1;UBERON:0005171,5.27e-09,1;UBERON:0003929,9.60e-07,55|phase1_expression=0,1.74487703819681,3.18499467572675,0,0.500895729946347,4.70061961353291,6.07392865548367,0.129123323441576,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.799962113967033,1.83527424853736,3.44539178469012,2.15380998079537,3.23206849028834,0.190023419456374,0,0.886922042621219,0,0,0,1.1554064790051,0,2.6542016314108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15945795480671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505524445014783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0.239630249011841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49465875882444,0,0,0.119372344003136,0.328281799490123,0,0,0.170870880797853,0,0,0,0,0,0.679913719975421,0.139951452323658,0.276399947608848,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0.198681354781265,0,0,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0|short_description=p@chr2:32753396..32753403,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1438 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:32753396..32753403,+ | |||
|id=chr2:32753396..32753403,+ | |||
|ontology_enrichment_celltype=CL:0002563!2.14e-13!9;CL:0002251!2.14e-13!9;CL:0000066!2.01e-12!25;CL:0000239!8.29e-11!6;CL:0000677!8.29e-11!6;CL:0000212!8.29e-11!6;CL:0000584!8.29e-11!6;CL:0002076!9.33e-10!15;CL:0000075!3.42e-09!7;CL:0000223!8.22e-09!20;CL:0000473!1.21e-08!3;CL:0000627!1.21e-08!3;CL:0000682!1.21e-08!3;CL:0000063!6.72e-07!66 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,7.29e-32,9;CL:0002251,7.29e-32,9;CL:0000066,2.48e-31,25;CL:0000682,6.49e-25,3;CL:0000239,5.03e-22,6;CL:0000677,5.03e-22,6;CL:0000584,5.03e-22,6;CL:0000223,3.30e-19,20;CL:0002076,4.11e-19,15;CL:0000075,6.12e-19,7;CL:0002250,2.23e-11,3;CL:0000473,4.60e-11,7;CL:0000213,5.27e-09,1;CL:0002078,5.27e-09,1;CL:0000115,5.27e-09,1;CL:0002262,5.27e-09,1;CL:1000398,5.27e-09,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!2.15e-18!15;UBERON:0001242!2.49e-14!13;UBERON:0000060!2.49e-14!13;UBERON:0001262!2.49e-14!13;UBERON:0004786!2.49e-14!13;UBERON:0003350!2.14e-13!9;UBERON:0004808!2.14e-13!9;UBERON:0001277!2.14e-13!9;UBERON:0004923!1.84e-12!24;UBERON:0000485!9.72e-11!11;UBERON:0000064!3.28e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,7.29e-32,9;UBERON:0004808,7.29e-32,9;UBERON:0001277,7.29e-32,9;UBERON:0000485,4.48e-26,11;UBERON:0000344,9.32e-26,15;UBERON:0001242,4.63e-22,13;UBERON:0001262,4.63e-22,13;UBERON:0004786,4.63e-22,13;UBERON:0004923,5.23e-16,24;UBERON:0000160,3.58e-09,31;UBERON:0003199,3.65e-09,1;UBERON:0002394,5.27e-09,1;UBERON:0001281,5.27e-09,1;UBERON:0000353,5.27e-09,1;UBERON:0003497,5.27e-09,1;UBERON:0003909,5.27e-09,1;UBERON:0003928,5.27e-09,1;UBERON:0003835,5.27e-09,1;UBERON:0003513,5.27e-09,1;UBERON:0001280,5.27e-09,1;UBERON:0004647,5.27e-09,1;UBERON:0002294,5.27e-09,1;UBERON:0001173,5.27e-09,1;UBERON:0004912,5.27e-09,1;UBERON:0005171,5.27e-09,1;UBERON:0003929,9.60e-07,55 | |||
|phase1_expression=0,1.74487703819681,3.18499467572675,0,0.500895729946347,4.70061961353291,6.07392865548367,0.129123323441576,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.799962113967033,1.83527424853736,3.44539178469012,2.15380998079537,3.23206849028834,0.190023419456374,0,0.886922042621219,0,0,0,1.1554064790051,0,2.6542016314108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15945795480671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505524445014783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0.239630249011841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49465875882444,0,0,0.119372344003136,0.328281799490123,0,0,0.170870880797853,0,0,0,0,0,0.679913719975421,0.139951452323658,0.276399947608848,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0.198681354781265,0,0,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:32753396..32753403,+ | |||
}} |
Revision as of 23:50, 13 September 2013
Short description: | p@chr2:32753396..32753403, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:32753396..32753403, + |
Coexpression cluster: | MCL_coexpression_mm9:1438 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.29e-32 | 9 |
epithelial cell of alimentary canal | 7.29e-32 | 9 |
epithelial cell | 2.48e-31 | 25 |
M cell of gut | 6.49e-25 | 3 |
brush border epithelial cell | 5.03e-22 | 6 |
gut absorptive cell | 5.03e-22 | 6 |
enterocyte | 5.03e-22 | 6 |
endodermal cell | 3.30e-19 | 20 |
endo-epithelial cell | 4.11e-19 | 15 |
columnar/cuboidal epithelial cell | 6.12e-19 | 7 |
intestinal crypt stem cell | 2.23e-11 | 3 |
defensive cell | 4.60e-11 | 7 |
lining cell | 5.27e-09 | 1 |
meso-epithelial cell | 5.27e-09 | 1 |
endothelial cell | 5.27e-09 | 1 |
endothelial cell of sinusoid | 5.27e-09 | 1 |
endothelial cell of hepatic sinusoid | 5.27e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 7.29e-32 | 9 |
gastrointestinal system epithelium | 7.29e-32 | 9 |
intestinal epithelium | 7.29e-32 | 9 |
simple columnar epithelium | 4.48e-26 | 11 |
mucosa | 9.32e-26 | 15 |
intestinal mucosa | 4.63e-22 | 13 |
wall of intestine | 4.63e-22 | 13 |
gastrointestinal system mucosa | 4.63e-22 | 13 |
organ component layer | 5.23e-16 | 24 |
intestine | 3.58e-09 | 31 |
egg chamber | 3.65e-09 | 1 |
bile duct | 5.27e-09 | 1 |
hepatic sinusoid | 5.27e-09 | 1 |
parenchyma | 5.27e-09 | 1 |
abdomen blood vessel | 5.27e-09 | 1 |
sinusoid | 5.27e-09 | 1 |
digestive system duct | 5.27e-09 | 1 |
abdominal segment blood vessel | 5.27e-09 | 1 |
trunk blood vessel | 5.27e-09 | 1 |
liver parenchyma | 5.27e-09 | 1 |
liver lobule | 5.27e-09 | 1 |
biliary system | 5.27e-09 | 1 |
biliary tree | 5.27e-09 | 1 |
biliary bud | 5.27e-09 | 1 |
hepatic duct | 5.27e-09 | 1 |
gut epithelium | 9.60e-07 | 55 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.