FFCP PHASE1:Mm9::chr7:51684308..51684349,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=272381|HGNC=|MCL_coexpression_id=747|UniProt=D3YZP3|association_with_transcript=-38bp_to_ENSMUST00000127790_5end|description=CAGE_peak_4_at_Lrrc4b_5end|id=chr7:51684308..51684349,+|ontology_enrichment_celltype=CL:0000117!1.31e-17!23;CL:0000337!1.31e-17!23;CL:0000221!1.43e-17!44;CL:0000133!1.43e-17!44;CL:0002319!3.15e-17!43;CL:0000540!4.46e-15!33;CL:0000047!4.46e-15!33;CL:0000031!4.46e-15!33;CL:0000404!4.46e-15!33;CL:0000055!2.66e-12!50;CL:0000393!1.49e-10!39;CL:0000211!1.49e-10!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.23e-31,23;CL:0000337,2.23e-31,23;CL:0002319,6.27e-26,43;CL:0000221,4.11e-25,44;CL:0000133,4.11e-25,44;CL:0000540,4.14e-21,33;CL:0000047,4.14e-21,33;CL:0000031,4.14e-21,33;CL:0000404,4.14e-21,33;CL:0000393,1.15e-16,39;CL:0000211,1.15e-16,39;CL:0002321,3.17e-12,70;CL:0002609,9.59e-08,6;CL:0002453,1.84e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.31e-37!73;UBERON:0005743!4.31e-37!73;UBERON:0000073!7.76e-36!75;UBERON:0001016!7.76e-36!75;UBERON:0004121!1.48e-31!102;UBERON:0000924!1.48e-31!102;UBERON:0006601!1.48e-31!102;UBERON:0002346!6.42e-31!71;UBERON:0003075!6.42e-31!71;UBERON:0007284!6.42e-31!71;UBERON:0001049!5.77e-30!52;UBERON:0005068!5.77e-30!52;UBERON:0006241!5.77e-30!52;UBERON:0007135!5.77e-30!52;UBERON:0000955!4.93e-28!50;UBERON:0006238!4.93e-28!50;UBERON:0000033!7.38e-28!63;UBERON:0002616!1.90e-27!49;UBERON:0003056!2.38e-23!49;UBERON:0003080!1.54e-22!40;UBERON:0002020!3.92e-22!34;UBERON:0002780!8.60e-22!39;UBERON:0001890!8.60e-22!39;UBERON:0006240!8.60e-22!39;UBERON:0002791!3.56e-18!29;UBERON:0003528!3.56e-18!29;UBERON:0001893!3.56e-18!29;UBERON:0000153!1.03e-14!94;UBERON:0007811!4.52e-14!86;UBERON:0000956!2.11e-12!21;UBERON:0001869!2.11e-12!21;UBERON:0000203!2.11e-12!21;UBERON:0002619!3.72e-10!17;UBERON:0003076!8.68e-08!12;UBERON:0003057!8.68e-08!12;UBERON:0002420!4.68e-07!8;UBERON:0007245!4.68e-07!8;UBERON:0010009!4.68e-07!8;UBERON:0010011!4.68e-07!8;UBERON:0000454!4.68e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.81e-52,73;UBERON:0001016,2.46e-50,75;UBERON:0000073,6.56e-48,54;UBERON:0001049,7.92e-45,52;UBERON:0005068,7.92e-45,52;UBERON:0006241,7.92e-45,52;UBERON:0007135,7.92e-45,52;UBERON:0002020,8.02e-40,34;UBERON:0004121,6.89e-38,95;UBERON:0000924,6.89e-38,95;UBERON:0006601,6.89e-38,95;UBERON:0002346,3.75e-37,64;UBERON:0003075,3.75e-37,64;UBERON:0007284,3.75e-37,64;UBERON:0000955,4.73e-37,47;UBERON:0006238,4.73e-37,47;UBERON:0002616,5.13e-36,46;UBERON:0003528,1.97e-32,29;UBERON:0002791,1.97e-32,29;UBERON:0001893,1.97e-32,29;UBERON:0010371,7.07e-31,73;UBERON:0003080,7.90e-31,40;UBERON:0002780,1.59e-29,39;UBERON:0001890,1.59e-29,39;UBERON:0006240,1.59e-29,39;UBERON:0003056,9.12e-25,49;UBERON:0010314,1.07e-21,92;UBERON:0000956,1.12e-21,21;UBERON:0001869,1.12e-21,21;UBERON:0000203,1.12e-21,21;UBERON:0002619,1.67e-17,17;UBERON:0003076,8.17e-14,12;UBERON:0003057,8.17e-14,12;UBERON:0000025,2.43e-13,114;UBERON:0002420,9.13e-12,8;UBERON:0007245,9.13e-12,8;UBERON:0010009,9.13e-12,8;UBERON:0010011,9.13e-12,8;UBERON:0000454,9.13e-12,8;UBERON:0004111,1.18e-11,122;UBERON:0002021,1.07e-10,10;UBERON:0000411,1.07e-10,10;UBERON:0001950,1.07e-10,10;UBERON:0011216,6.06e-10,194;UBERON:0002240,1.20e-09,6;UBERON:0005174,1.20e-09,6;UBERON:0001137,1.20e-09,6;UBERON:0001948,2.32e-08,5;UBERON:0002315,2.32e-08,5;UBERON:0001954,3.22e-08,7;UBERON:0003022,3.22e-08,7;UBERON:0002421,3.22e-08,7;UBERON:0000349,3.22e-08,7;UBERON:0002600,3.22e-08,7;UBERON:0000369,1.15e-07,5;UBERON:0002435,1.15e-07,5;UBERON:0000204,1.15e-07,5;UBERON:0010082,1.15e-07,5;UBERON:0002950,6.46e-07,4;UBERON:0001891,6.46e-07,4;UBERON:0009616,6.46e-07,4;UBERON:0010286,6.46e-07,4|phase1_expression=0.80074423552397,0,0,0.30246421130683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.41285531693518,3.51497892375155,2.52758868796568,1.53985063787899,1.43752564364972,0,0,0.336093799142464,0,0,0,15.578367486189,13.2247744818008,13.9442908771359,0,0,0,0,0,14.9800055259202,40.3429220587632,5.91030790158323,3.51015439662396,5.25812403378455,20.2812198926701,12.8103753751936,3.67472397644862,4.69642807989358,6.43453150627015,9.91042928994498,14.5563565417114,14.2854075928306,15.5625819521629,12.0763689555181,10.4182674111352,13.959149950069,17.4456409109821,10.8486755921535,14.142172102736,12.6710795911202,11.3703661953433,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0,0.593768556259299,0.346970653532272,0.304465478312141,0.461230994512117,0.301445281105245,0.117588707135705,0.125666591329675,0,0,0,0.161766849947409,0,0,0,7.02673912827713,4.1889341362691,0,0,0,0,10.7849260371472,4.57500602818627,5.78010019719176,3.65031072403781,4.09144731728529,8.3115217823824,5.51620294430376,0.509196819251581,0.124406970610093,0,0,0.390361328888111,0.459804208866946,0.900310649026746,0.452114453507145,1.42876648217788,0.512454881139399,0.843315521037559,0.517406741478031,0.431135985865684,0,0.351902248327898,0.876782929710299,0.556094498451196,1.0447564995665,0.411564272815887,0.199034266818493,0,0,0,0,0,0.180062061461015,0,0.393528463494808,0,0,0,0,0,0,0.0810688095458557,0,0,0,3.57492912559016,3.91037527041281,0,0,0,0,0,0.201683524623343,0,0,0.474529061544512,0.329397909448022,0,0,0,0.898819408654221,0.216138049874694,0.199141273254367,0,0.342745537829186,0,0.203651327845314,0.193952487167626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0.162964976442026,0.339490171550376,0.234690248288502,0.335012514883631,0,0,0.157635144106191,0,0.159454768657487,0,0,0.144649058581512,0,0,0,0.275936746304732,8.34863067936518,7.85318300167761,0,0,0.631016438832513,0,1.29254038639679,0.238968797952552,0.445597348164788,0.283076530788832,0,0.584511715822624,0,3.53453448063988,0,0.35613120733451,0.325773918707152,0.329940245945071,0,0.242780636154981,0.302323556964751,0,0.295301892880773,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0.900305470156551,1.81102157295856,0.857348140126369,0.532020700926821,0.713475270408282,0.822745103010605,1.8267896946876,0,0,0.220528398054962,0,0,0,0,0,0,11.6817940266621,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0.209088296014469,0,0,0.165306911450672,0.26175594198403,0.129614973291793,0,0,0.149516546043979,0,0,0.258319646955462,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0.100826185136841,0,0,0,0,0.887943813496259,0.269141569828427,0.167884616364078,0.19318959403219,0,0,0,0,3.95326289831947,1.38097570952153,5.15605962095457,3.60891682921744,4.11049511862385,3.0215755895588,4.05013500139084,1.35096360967266,4.98456649882625,3.62432218226274,0.93408612825759,1.59609949360412,2.73173769206615,0.729320151204882,0.838452650511929,0.367687016900028,0.44449345560323,0.206035057238894,0.320919209591815,0.758091635291392,0.760437899670719,0.754505365544305,0.936415074698824,1.21647789569252,1.32101578597911,1.42888107384922,1.15884325944855,0.964546102318525,0.412085900803307,0.441596760403192,0.685738504770831,0.70990322463735,0,0.581385666529314,0.752875043322645,0.676916863133412,0.182927972872773,0.526139422875686,0.814824683075171,0,1.06771516311757,1.0835493061312,0,0.619747364743864,0.578719832943424,3.2475375131933,0.701794825336225,1.50409737833809,0.57386499620653,0.220591419119515,0.463735671240843|short_description=p4@Lrrc4b}} | ||
|EntrezGene=272381 | |||
|HGNC= | |||
|MCL_coexpression_id=747 | |||
|UniProt=D3YZP3 | |||
|association_with_transcript=-38bp_to_ENSMUST00000127790_5end | |||
|description=CAGE_peak_4_at_Lrrc4b_5end | |||
|id=chr7:51684308..51684349,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.31e-17!23;CL:0000337!1.31e-17!23;CL:0000221!1.43e-17!44;CL:0000133!1.43e-17!44;CL:0002319!3.15e-17!43;CL:0000540!4.46e-15!33;CL:0000047!4.46e-15!33;CL:0000031!4.46e-15!33;CL:0000404!4.46e-15!33;CL:0000055!2.66e-12!50;CL:0000393!1.49e-10!39;CL:0000211!1.49e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.23e-31,23;CL:0000337,2.23e-31,23;CL:0002319,6.27e-26,43;CL:0000221,4.11e-25,44;CL:0000133,4.11e-25,44;CL:0000540,4.14e-21,33;CL:0000047,4.14e-21,33;CL:0000031,4.14e-21,33;CL:0000404,4.14e-21,33;CL:0000393,1.15e-16,39;CL:0000211,1.15e-16,39;CL:0002321,3.17e-12,70;CL:0002609,9.59e-08,6;CL:0002453,1.84e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.31e-37!73;UBERON:0005743!4.31e-37!73;UBERON:0000073!7.76e-36!75;UBERON:0001016!7.76e-36!75;UBERON:0004121!1.48e-31!102;UBERON:0000924!1.48e-31!102;UBERON:0006601!1.48e-31!102;UBERON:0002346!6.42e-31!71;UBERON:0003075!6.42e-31!71;UBERON:0007284!6.42e-31!71;UBERON:0001049!5.77e-30!52;UBERON:0005068!5.77e-30!52;UBERON:0006241!5.77e-30!52;UBERON:0007135!5.77e-30!52;UBERON:0000955!4.93e-28!50;UBERON:0006238!4.93e-28!50;UBERON:0000033!7.38e-28!63;UBERON:0002616!1.90e-27!49;UBERON:0003056!2.38e-23!49;UBERON:0003080!1.54e-22!40;UBERON:0002020!3.92e-22!34;UBERON:0002780!8.60e-22!39;UBERON:0001890!8.60e-22!39;UBERON:0006240!8.60e-22!39;UBERON:0002791!3.56e-18!29;UBERON:0003528!3.56e-18!29;UBERON:0001893!3.56e-18!29;UBERON:0000153!1.03e-14!94;UBERON:0007811!4.52e-14!86;UBERON:0000956!2.11e-12!21;UBERON:0001869!2.11e-12!21;UBERON:0000203!2.11e-12!21;UBERON:0002619!3.72e-10!17;UBERON:0003076!8.68e-08!12;UBERON:0003057!8.68e-08!12;UBERON:0002420!4.68e-07!8;UBERON:0007245!4.68e-07!8;UBERON:0010009!4.68e-07!8;UBERON:0010011!4.68e-07!8;UBERON:0000454!4.68e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.81e-52,73;UBERON:0001016,2.46e-50,75;UBERON:0000073,6.56e-48,54;UBERON:0001049,7.92e-45,52;UBERON:0005068,7.92e-45,52;UBERON:0006241,7.92e-45,52;UBERON:0007135,7.92e-45,52;UBERON:0002020,8.02e-40,34;UBERON:0004121,6.89e-38,95;UBERON:0000924,6.89e-38,95;UBERON:0006601,6.89e-38,95;UBERON:0002346,3.75e-37,64;UBERON:0003075,3.75e-37,64;UBERON:0007284,3.75e-37,64;UBERON:0000955,4.73e-37,47;UBERON:0006238,4.73e-37,47;UBERON:0002616,5.13e-36,46;UBERON:0003528,1.97e-32,29;UBERON:0002791,1.97e-32,29;UBERON:0001893,1.97e-32,29;UBERON:0010371,7.07e-31,73;UBERON:0003080,7.90e-31,40;UBERON:0002780,1.59e-29,39;UBERON:0001890,1.59e-29,39;UBERON:0006240,1.59e-29,39;UBERON:0003056,9.12e-25,49;UBERON:0010314,1.07e-21,92;UBERON:0000956,1.12e-21,21;UBERON:0001869,1.12e-21,21;UBERON:0000203,1.12e-21,21;UBERON:0002619,1.67e-17,17;UBERON:0003076,8.17e-14,12;UBERON:0003057,8.17e-14,12;UBERON:0000025,2.43e-13,114;UBERON:0002420,9.13e-12,8;UBERON:0007245,9.13e-12,8;UBERON:0010009,9.13e-12,8;UBERON:0010011,9.13e-12,8;UBERON:0000454,9.13e-12,8;UBERON:0004111,1.18e-11,122;UBERON:0002021,1.07e-10,10;UBERON:0000411,1.07e-10,10;UBERON:0001950,1.07e-10,10;UBERON:0011216,6.06e-10,194;UBERON:0002240,1.20e-09,6;UBERON:0005174,1.20e-09,6;UBERON:0001137,1.20e-09,6;UBERON:0001948,2.32e-08,5;UBERON:0002315,2.32e-08,5;UBERON:0001954,3.22e-08,7;UBERON:0003022,3.22e-08,7;UBERON:0002421,3.22e-08,7;UBERON:0000349,3.22e-08,7;UBERON:0002600,3.22e-08,7;UBERON:0000369,1.15e-07,5;UBERON:0002435,1.15e-07,5;UBERON:0000204,1.15e-07,5;UBERON:0010082,1.15e-07,5;UBERON:0002950,6.46e-07,4;UBERON:0001891,6.46e-07,4;UBERON:0009616,6.46e-07,4;UBERON:0010286,6.46e-07,4 | |||
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|short_description=p4@Lrrc4b | |||
}} |
Revision as of 13:35, 14 September 2013
Short description: | p4@Lrrc4b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Lrrc4b_5end |
Coexpression cluster: | MCL_coexpression_mm9:747 |
Association with transcript: | -38bp_to_ENSMUST00000127790_5end |
EntrezGene: | Lrrc4b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.23e-31 | 23 |
neuroblast (sensu Vertebrata) | 2.23e-31 | 23 |
neural cell | 6.27e-26 | 43 |
ectodermal cell | 4.11e-25 | 44 |
neurectodermal cell | 4.11e-25 | 44 |
neuron | 4.14e-21 | 33 |
neuronal stem cell | 4.14e-21 | 33 |
neuroblast | 4.14e-21 | 33 |
electrically signaling cell | 4.14e-21 | 33 |
electrically responsive cell | 1.15e-16 | 39 |
electrically active cell | 1.15e-16 | 39 |
embryonic cell | 3.17e-12 | 70 |
neuron of cerebral cortex | 9.59e-08 | 6 |
oligodendrocyte precursor cell | 1.84e-07 | 8 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.