FFCP PHASE1:Mm9::chr11:58198221..58198230,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:58198221..58198230,+|id=chr11:58198221..58198230,+|ontology_enrichment_celltype=CL:0002563!2.97e-17!9;CL:0002251!2.97e-17!9;CL:0000239!1.04e-12!6;CL:0000677!1.04e-12!6;CL:0000212!1.04e-12!6;CL:0000584!1.04e-12!6;CL:0000075!9.20e-11!7;CL:0002076!1.41e-09!15;CL:0000066!1.45e-09!25;CL:0000473!1.93e-07!3;CL:0000627!1.93e-07!3;CL:0000682!1.93e-07!3|ontology_enrichment_celltype_v019_2=CL:0000239,4.60e-26,6;CL:0000677,4.60e-26,6;CL:0000584,4.60e-26,6;CL:0000075,2.72e-22,7;CL:0002563,2.95e-17,9;CL:0002251,2.95e-17,9;CL:0000682,1.77e-14,3;CL:0000066,2.80e-13,25;CL:0002076,3.51e-10,15;CL:0000223,1.62e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!1.18e-25!59;UBERON:0000344!1.92e-24!15;UBERON:0000160!1.95e-23!43;UBERON:0001242!7.67e-21!13;UBERON:0000060!7.67e-21!13;UBERON:0001262!7.67e-21!13;UBERON:0004786!7.67e-21!13;UBERON:0003350!2.97e-17!9;UBERON:0004808!2.97e-17!9;UBERON:0001277!2.97e-17!9;UBERON:0004923!6.68e-14!24;UBERON:0000485!9.26e-14!11;UBERON:0001007!2.58e-09!128;UBERON:0001555!2.58e-09!128;UBERON:0007026!2.58e-09!128;UBERON:0004119!4.77e-09!130;UBERON:0000925!4.77e-09!130;UBERON:0006595!4.77e-09!130;UBERON:0004921!7.08e-08!126;UBERON:0004185!7.08e-08!126;UBERON:0000331!4.28e-07!3;UBERON:0002116!4.28e-07!3;UBERON:0001204!4.28e-07!3;UBERON:0001168!4.28e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000344,6.42e-28,15;UBERON:0001242,3.77e-26,13;UBERON:0001262,3.77e-26,13;UBERON:0004786,3.77e-26,13;UBERON:0000160,5.12e-22,31;UBERON:0005409,9.51e-22,47;UBERON:0003350,2.95e-17,9;UBERON:0004808,2.95e-17,9;UBERON:0001277,2.95e-17,9;UBERON:0004923,6.47e-17,24;UBERON:0000485,4.81e-14,11;UBERON:0000331,1.01e-13,3;UBERON:0002116,1.01e-13,3;UBERON:0001204,1.01e-13,3;UBERON:0001168,1.01e-13,3;UBERON:0002108,1.99e-10,4;UBERON:0001007,1.87e-08,116;UBERON:0001555,1.87e-08,116;UBERON:0007026,1.87e-08,116;UBERON:0004119,2.90e-08,118;UBERON:0000925,2.90e-08,118;UBERON:0006595,2.90e-08,118;UBERON:0004921,1.93e-07,114|phase1_expression=0,1.39590163055744,1.81999695755814,1.51232105653415,1.50268718983904,1.17515490338323,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639969691173627,1.60586496747019,2.29692785646008,2.58457197695445,1.50829862880122,3.6104449696711,1.00812051903972,1.10865255327652,0,0,0,0.288851619751275,0.498703936075477,0.612508068787107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.758168275301024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05780226665418,0,0,0,0.605050573870028,0.22237804384487,0.380451252225118,0.474529061544512,0.658795818896044,0.251335208800269,0.596869416123452,0.38992817423824,2.69645822596266,1.51296634912286,1.59313018603494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,7.63736494412091,0,0,0.108005340821801,0,0.218362563746178,1.07891477107857,0,0.523511883968059,2.20345454596048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0.145346416632329,0.0941093804153306,0,0,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0.192906610981141,0,0,0,0.191288332068843,0,0|short_description=p@chr11:58198221..58198230,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:58198221..58198230,+ | |||
|id=chr11:58198221..58198230,+ | |||
|ontology_enrichment_celltype=CL:0002563!2.97e-17!9;CL:0002251!2.97e-17!9;CL:0000239!1.04e-12!6;CL:0000677!1.04e-12!6;CL:0000212!1.04e-12!6;CL:0000584!1.04e-12!6;CL:0000075!9.20e-11!7;CL:0002076!1.41e-09!15;CL:0000066!1.45e-09!25;CL:0000473!1.93e-07!3;CL:0000627!1.93e-07!3;CL:0000682!1.93e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,4.60e-26,6;CL:0000677,4.60e-26,6;CL:0000584,4.60e-26,6;CL:0000075,2.72e-22,7;CL:0002563,2.95e-17,9;CL:0002251,2.95e-17,9;CL:0000682,1.77e-14,3;CL:0000066,2.80e-13,25;CL:0002076,3.51e-10,15;CL:0000223,1.62e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!1.18e-25!59;UBERON:0000344!1.92e-24!15;UBERON:0000160!1.95e-23!43;UBERON:0001242!7.67e-21!13;UBERON:0000060!7.67e-21!13;UBERON:0001262!7.67e-21!13;UBERON:0004786!7.67e-21!13;UBERON:0003350!2.97e-17!9;UBERON:0004808!2.97e-17!9;UBERON:0001277!2.97e-17!9;UBERON:0004923!6.68e-14!24;UBERON:0000485!9.26e-14!11;UBERON:0001007!2.58e-09!128;UBERON:0001555!2.58e-09!128;UBERON:0007026!2.58e-09!128;UBERON:0004119!4.77e-09!130;UBERON:0000925!4.77e-09!130;UBERON:0006595!4.77e-09!130;UBERON:0004921!7.08e-08!126;UBERON:0004185!7.08e-08!126;UBERON:0000331!4.28e-07!3;UBERON:0002116!4.28e-07!3;UBERON:0001204!4.28e-07!3;UBERON:0001168!4.28e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,6.42e-28,15;UBERON:0001242,3.77e-26,13;UBERON:0001262,3.77e-26,13;UBERON:0004786,3.77e-26,13;UBERON:0000160,5.12e-22,31;UBERON:0005409,9.51e-22,47;UBERON:0003350,2.95e-17,9;UBERON:0004808,2.95e-17,9;UBERON:0001277,2.95e-17,9;UBERON:0004923,6.47e-17,24;UBERON:0000485,4.81e-14,11;UBERON:0000331,1.01e-13,3;UBERON:0002116,1.01e-13,3;UBERON:0001204,1.01e-13,3;UBERON:0001168,1.01e-13,3;UBERON:0002108,1.99e-10,4;UBERON:0001007,1.87e-08,116;UBERON:0001555,1.87e-08,116;UBERON:0007026,1.87e-08,116;UBERON:0004119,2.90e-08,118;UBERON:0000925,2.90e-08,118;UBERON:0006595,2.90e-08,118;UBERON:0004921,1.93e-07,114 | |||
|phase1_expression=0,1.39590163055744,1.81999695755814,1.51232105653415,1.50268718983904,1.17515490338323,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639969691173627,1.60586496747019,2.29692785646008,2.58457197695445,1.50829862880122,3.6104449696711,1.00812051903972,1.10865255327652,0,0,0,0.288851619751275,0.498703936075477,0.612508068787107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.758168275301024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05780226665418,0,0,0,0.605050573870028,0.22237804384487,0.380451252225118,0.474529061544512,0.658795818896044,0.251335208800269,0.596869416123452,0.38992817423824,2.69645822596266,1.51296634912286,1.59313018603494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,7.63736494412091,0,0,0.108005340821801,0,0.218362563746178,1.07891477107857,0,0.523511883968059,2.20345454596048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0.145346416632329,0.0941093804153306,0,0,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0.192906610981141,0,0,0,0.191288332068843,0,0 | |||
|short_description=p@chr11:58198221..58198230,+ | |||
}} |
Revision as of 20:07, 12 September 2013
Short description: | p@chr11:58198221..58198230, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:58198221..58198230, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 4.60e-26 | 6 |
gut absorptive cell | 4.60e-26 | 6 |
enterocyte | 4.60e-26 | 6 |
columnar/cuboidal epithelial cell | 2.72e-22 | 7 |
intestinal epithelial cell | 2.95e-17 | 9 |
epithelial cell of alimentary canal | 2.95e-17 | 9 |
M cell of gut | 1.77e-14 | 3 |
epithelial cell | 2.80e-13 | 25 |
endo-epithelial cell | 3.51e-10 | 15 |
endodermal cell | 1.62e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 6.42e-28 | 15 |
intestinal mucosa | 3.77e-26 | 13 |
wall of intestine | 3.77e-26 | 13 |
gastrointestinal system mucosa | 3.77e-26 | 13 |
intestine | 5.12e-22 | 31 |
gastrointestinal system | 9.51e-22 | 47 |
epithelium of mucosa | 2.95e-17 | 9 |
gastrointestinal system epithelium | 2.95e-17 | 9 |
intestinal epithelium | 2.95e-17 | 9 |
organ component layer | 6.47e-17 | 24 |
simple columnar epithelium | 4.81e-14 | 11 |
ileal mucosa | 1.01e-13 | 3 |
ileum | 1.01e-13 | 3 |
mucosa of small intestine | 1.01e-13 | 3 |
wall of small intestine | 1.01e-13 | 3 |
small intestine | 1.99e-10 | 4 |
digestive system | 1.87e-08 | 116 |
digestive tract | 1.87e-08 | 116 |
primitive gut | 1.87e-08 | 116 |
endoderm-derived structure | 2.90e-08 | 118 |
endoderm | 2.90e-08 | 118 |
presumptive endoderm | 2.90e-08 | 118 |
subdivision of digestive tract | 1.93e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.