FFCP PHASE1:Mm9::chr2:162486785..162486794,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=19281|HGNC=|MCL_coexpression_id=1|UniProt=B1AQN2|association_with_transcript=35bp_to_ENSMUST00000109442_5end|description=CAGE_peak_2_at_Ptprt_5end|id=chr2:162486785..162486794,-|ontology_enrichment_celltype=CL:0000117!2.94e-12!23;CL:0000337!2.94e-12!23;CL:0000540!2.36e-10!33;CL:0000047!2.36e-10!33;CL:0000031!2.36e-10!33;CL:0000404!2.36e-10!33;CL:0000221!4.63e-10!44;CL:0000133!4.63e-10!44;CL:0002319!1.34e-09!43;CL:0000393!7.58e-07!39;CL:0000211!7.58e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,6.13e-19,23;CL:0000337,6.13e-19,23;CL:0000540,1.78e-11,33;CL:0000047,1.78e-11,33;CL:0000031,1.78e-11,33;CL:0000404,1.78e-11,33;CL:0000221,3.86e-09,44;CL:0000133,3.86e-09,44;CL:0000393,6.91e-09,39;CL:0000211,6.91e-09,39;CL:0002319,1.88e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.21e-28!73;UBERON:0005743!6.21e-28!73;UBERON:0000073!1.20e-27!75;UBERON:0001016!1.20e-27!75;UBERON:0000033!7.60e-27!63;UBERON:0001049!8.04e-26!52;UBERON:0005068!8.04e-26!52;UBERON:0006241!8.04e-26!52;UBERON:0007135!8.04e-26!52;UBERON:0000955!1.98e-24!50;UBERON:0006238!1.98e-24!50;UBERON:0002346!2.46e-24!71;UBERON:0003075!2.46e-24!71;UBERON:0007284!2.46e-24!71;UBERON:0004121!4.02e-24!102;UBERON:0000924!4.02e-24!102;UBERON:0006601!4.02e-24!102;UBERON:0002616!1.38e-23!49;UBERON:0003056!8.65e-21!49;UBERON:0003080!1.02e-19!40;UBERON:0002020!1.41e-19!34;UBERON:0002780!5.58e-19!39;UBERON:0001890!5.58e-19!39;UBERON:0006240!5.58e-19!39;UBERON:0002791!3.21e-16!29;UBERON:0003528!3.21e-16!29;UBERON:0001893!3.21e-16!29;UBERON:0007811!4.93e-14!86;UBERON:0000153!9.56e-14!94;UBERON:0000956!9.47e-12!21;UBERON:0001869!9.47e-12!21;UBERON:0000203!9.47e-12!21;UBERON:0002619!1.25e-09!17;UBERON:0002021!2.15e-08!10;UBERON:0000411!2.15e-08!10;UBERON:0001950!2.15e-08!10;UBERON:0004111!3.41e-08!122;UBERON:0000025!8.51e-08!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.88e-41,54;UBERON:0001049,1.01e-38,52;UBERON:0005068,1.01e-38,52;UBERON:0006241,1.01e-38,52;UBERON:0007135,1.01e-38,52;UBERON:0001017,6.78e-36,73;UBERON:0001016,1.45e-34,75;UBERON:0002346,1.78e-32,64;UBERON:0003075,1.78e-32,64;UBERON:0007284,1.78e-32,64;UBERON:0000955,2.14e-32,47;UBERON:0006238,2.14e-32,47;UBERON:0002020,3.79e-32,34;UBERON:0002616,6.94e-31,46;UBERON:0010371,1.93e-28,73;UBERON:0004121,2.10e-28,95;UBERON:0000924,2.10e-28,95;UBERON:0006601,2.10e-28,95;UBERON:0003080,1.75e-27,40;UBERON:0002780,3.88e-26,39;UBERON:0001890,3.88e-26,39;UBERON:0006240,3.88e-26,39;UBERON:0003528,1.21e-25,29;UBERON:0002791,1.21e-25,29;UBERON:0001893,1.21e-25,29;UBERON:0003056,7.92e-24,49;UBERON:0010314,6.44e-20,92;UBERON:0000956,5.49e-17,21;UBERON:0001869,5.49e-17,21;UBERON:0000203,5.49e-17,21;UBERON:0002021,4.09e-15,10;UBERON:0000411,4.09e-15,10;UBERON:0001950,4.09e-15,10;UBERON:0002619,6.34e-13,17;UBERON:0000025,1.05e-12,114;UBERON:0004111,6.67e-12,122;UBERON:0003076,3.09e-11,12;UBERON:0003057,3.09e-11,12;UBERON:0002420,7.54e-10,8;UBERON:0007245,7.54e-10,8;UBERON:0010009,7.54e-10,8;UBERON:0010011,7.54e-10,8;UBERON:0000454,7.54e-10,8;UBERON:0002240,7.19e-09,6;UBERON:0005174,7.19e-09,6;UBERON:0001137,7.19e-09,6;UBERON:0001948,1.08e-07,5;UBERON:0002315,1.08e-07,5;UBERON:0000369,6.40e-07,5;UBERON:0002435,6.40e-07,5;UBERON:0000204,6.40e-07,5;UBERON:0010082,6.40e-07,5;UBERON:0011216,8.08e-07,194|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.439372365468944,0.388859798148567,0.139986421625363,0,0,0,0,0,0,0,2.22548106945558,0.528990979272033,1.90149421051854,0,0,0,0,0,0.599200221036809,1.15265491596466,1.34796496001021,1.89008313664367,1.05162480675691,3.14216082844184,2.42955395046775,1.34739879136449,0.191690942036473,0.919218786610021,2.20231761998777,3.31987079021488,2.76491759861238,3.03338461779446,1.73826522844578,1.04182674111352,1.3959149950069,1.68828783009504,2.44477196442896,4.12480019663135,5.12538050876771,2.23679334990361,0.302904773332736,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,1.69012103732017,0,0,0,0,0.253359865475099,0,0.34255163915718,0,0,0,0.608930956624282,0,0.452167921657868,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,2.92780797011547,4.1889341362691,0,0,0,0,4.34392854273986,4.11750542536764,3.5183218591602,8.8650403298061,8.18289463457058,3.53239675751252,5.353961681236,0,0.124406970610093,0,0.420883711772948,0.650602214813519,0.229902104433473,0.180062129805349,0.452114453507145,1.42876648217788,0.512454881139399,1.59292931751539,0.258703370739016,0.431135985865684,1.32374256117473,1.40760899331159,0.219195732427575,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0.234526059981096,0,0.473489471170421,0.196764231747404,0.154267112887378,0.232533944750408,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,2.94405927989778,1.74937841044784,0,0,0.426576501070468,0.464473343720877,0.257734922644187,0,0.22237804384487,0.190225626112559,0,0,0.251335208800269,0,0.38992817423824,0,0,0,0.189667900953082,0.571242563048644,0,0.610953983535943,0,0.420814919341911,0,0,0,0,0,0,0,0,0.202860121388503,0.241177159752417,0.25462585178142,0,0.162135226775035,0.823684239564244,1.43768206527355,0.744281895337007,0.312037673114561,0.252578877947112,0,0,0,0.189491411770485,0,0,0,0.167506257441816,0.238043640886014,0.390267295715598,0.157635144106191,0.664394068946325,1.11618338060241,0,0.345369963731791,0.144649058581512,0,0,0,0.551873492609465,4.49541651965817,3.8679856575427,0,0,0.631016438832513,0.390438744296638,0.646270193198397,0,0,0,0.404810701674894,0.292255857911312,0.790575555893047,9.96096080907602,0.425820255624806,0,0.325773918707152,0,1.32745138339963,0,0,0,0.590603785761546,1.22974059177571,0.258428293168221,0.727067458955011,1.06949213515416,0,0,0,0,1.62054984628179,1.03486947026204,0.857348140126369,0.886701168211368,1.78368817602071,0.987294123612726,0.304464949114599,0,0,0.220528398054962,0,0.161464426695906,0,0,0,0.291480836629851,2.96680483216816,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0.436725127492355,0,0.743881101528023,0,0.129614973291793,0.621339313086926,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0.104859344425711,0,0,0,0,0.513554785824136,0,0.179026695667481,0.198681354781265,0,0.295379054349154,0,0,0,0,0,0,0.680191150845634,0,0.269141569828427,0,0.19318959403219,0,0,0,0,3.3885110557024,1.84130094602871,5.15605962095457,8.42080593484069,5.48066015816514,4.5323633843382,4.05013500139084,4.95353323546643,6.79713613476307,4.14208249401456,0.207574695168353,0.399024873401031,0.512200817262403,0.486213434136588,0.209613162627982,1.10306105070008,0.666740183404846,0.412070114477788,1.28367683836726,1.01078884705519,1.52087579934144,1.69763707247469,0.936415074698824,0.512201219238954,0.516919220600519,0.952587382566147,1.27472758539341,0.578727661391115,1.23625770240992,1.32479028120958,0.685738504770831,0.177475806159338,0.715308569841963,1.0174249164263,0.470546902076653,0.930760686808441,0.914639864363863,0.526139422875686,0.543216455383447,0.561142271657738,0.474540072496697,0.985044823755635,0.818462086339379,0.929621047115796,0.385813221962283,0.999242311751784,0.701794825336225,0.859484216193193,0,0.220591419119515,0|short_description=p2@Ptprt}} | ||
|EntrezGene=19281 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=B1AQN2 | |||
|association_with_transcript=35bp_to_ENSMUST00000109442_5end | |||
|description=CAGE_peak_2_at_Ptprt_5end | |||
|id=chr2:162486785..162486794,- | |||
|ontology_enrichment_celltype=CL:0000117!2.94e-12!23;CL:0000337!2.94e-12!23;CL:0000540!2.36e-10!33;CL:0000047!2.36e-10!33;CL:0000031!2.36e-10!33;CL:0000404!2.36e-10!33;CL:0000221!4.63e-10!44;CL:0000133!4.63e-10!44;CL:0002319!1.34e-09!43;CL:0000393!7.58e-07!39;CL:0000211!7.58e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.13e-19,23;CL:0000337,6.13e-19,23;CL:0000540,1.78e-11,33;CL:0000047,1.78e-11,33;CL:0000031,1.78e-11,33;CL:0000404,1.78e-11,33;CL:0000221,3.86e-09,44;CL:0000133,3.86e-09,44;CL:0000393,6.91e-09,39;CL:0000211,6.91e-09,39;CL:0002319,1.88e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.21e-28!73;UBERON:0005743!6.21e-28!73;UBERON:0000073!1.20e-27!75;UBERON:0001016!1.20e-27!75;UBERON:0000033!7.60e-27!63;UBERON:0001049!8.04e-26!52;UBERON:0005068!8.04e-26!52;UBERON:0006241!8.04e-26!52;UBERON:0007135!8.04e-26!52;UBERON:0000955!1.98e-24!50;UBERON:0006238!1.98e-24!50;UBERON:0002346!2.46e-24!71;UBERON:0003075!2.46e-24!71;UBERON:0007284!2.46e-24!71;UBERON:0004121!4.02e-24!102;UBERON:0000924!4.02e-24!102;UBERON:0006601!4.02e-24!102;UBERON:0002616!1.38e-23!49;UBERON:0003056!8.65e-21!49;UBERON:0003080!1.02e-19!40;UBERON:0002020!1.41e-19!34;UBERON:0002780!5.58e-19!39;UBERON:0001890!5.58e-19!39;UBERON:0006240!5.58e-19!39;UBERON:0002791!3.21e-16!29;UBERON:0003528!3.21e-16!29;UBERON:0001893!3.21e-16!29;UBERON:0007811!4.93e-14!86;UBERON:0000153!9.56e-14!94;UBERON:0000956!9.47e-12!21;UBERON:0001869!9.47e-12!21;UBERON:0000203!9.47e-12!21;UBERON:0002619!1.25e-09!17;UBERON:0002021!2.15e-08!10;UBERON:0000411!2.15e-08!10;UBERON:0001950!2.15e-08!10;UBERON:0004111!3.41e-08!122;UBERON:0000025!8.51e-08!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.88e-41,54;UBERON:0001049,1.01e-38,52;UBERON:0005068,1.01e-38,52;UBERON:0006241,1.01e-38,52;UBERON:0007135,1.01e-38,52;UBERON:0001017,6.78e-36,73;UBERON:0001016,1.45e-34,75;UBERON:0002346,1.78e-32,64;UBERON:0003075,1.78e-32,64;UBERON:0007284,1.78e-32,64;UBERON:0000955,2.14e-32,47;UBERON:0006238,2.14e-32,47;UBERON:0002020,3.79e-32,34;UBERON:0002616,6.94e-31,46;UBERON:0010371,1.93e-28,73;UBERON:0004121,2.10e-28,95;UBERON:0000924,2.10e-28,95;UBERON:0006601,2.10e-28,95;UBERON:0003080,1.75e-27,40;UBERON:0002780,3.88e-26,39;UBERON:0001890,3.88e-26,39;UBERON:0006240,3.88e-26,39;UBERON:0003528,1.21e-25,29;UBERON:0002791,1.21e-25,29;UBERON:0001893,1.21e-25,29;UBERON:0003056,7.92e-24,49;UBERON:0010314,6.44e-20,92;UBERON:0000956,5.49e-17,21;UBERON:0001869,5.49e-17,21;UBERON:0000203,5.49e-17,21;UBERON:0002021,4.09e-15,10;UBERON:0000411,4.09e-15,10;UBERON:0001950,4.09e-15,10;UBERON:0002619,6.34e-13,17;UBERON:0000025,1.05e-12,114;UBERON:0004111,6.67e-12,122;UBERON:0003076,3.09e-11,12;UBERON:0003057,3.09e-11,12;UBERON:0002420,7.54e-10,8;UBERON:0007245,7.54e-10,8;UBERON:0010009,7.54e-10,8;UBERON:0010011,7.54e-10,8;UBERON:0000454,7.54e-10,8;UBERON:0002240,7.19e-09,6;UBERON:0005174,7.19e-09,6;UBERON:0001137,7.19e-09,6;UBERON:0001948,1.08e-07,5;UBERON:0002315,1.08e-07,5;UBERON:0000369,6.40e-07,5;UBERON:0002435,6.40e-07,5;UBERON:0000204,6.40e-07,5;UBERON:0010082,6.40e-07,5;UBERON:0011216,8.08e-07,194 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.439372365468944,0.388859798148567,0.139986421625363,0,0,0,0,0,0,0,2.22548106945558,0.528990979272033,1.90149421051854,0,0,0,0,0,0.599200221036809,1.15265491596466,1.34796496001021,1.89008313664367,1.05162480675691,3.14216082844184,2.42955395046775,1.34739879136449,0.191690942036473,0.919218786610021,2.20231761998777,3.31987079021488,2.76491759861238,3.03338461779446,1.73826522844578,1.04182674111352,1.3959149950069,1.68828783009504,2.44477196442896,4.12480019663135,5.12538050876771,2.23679334990361,0.302904773332736,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,1.69012103732017,0,0,0,0,0.253359865475099,0,0.34255163915718,0,0,0,0.608930956624282,0,0.452167921657868,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,2.92780797011547,4.1889341362691,0,0,0,0,4.34392854273986,4.11750542536764,3.5183218591602,8.8650403298061,8.18289463457058,3.53239675751252,5.353961681236,0,0.124406970610093,0,0.420883711772948,0.650602214813519,0.229902104433473,0.180062129805349,0.452114453507145,1.42876648217788,0.512454881139399,1.59292931751539,0.258703370739016,0.431135985865684,1.32374256117473,1.40760899331159,0.219195732427575,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0.234526059981096,0,0.473489471170421,0.196764231747404,0.154267112887378,0.232533944750408,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,2.94405927989778,1.74937841044784,0,0,0.426576501070468,0.464473343720877,0.257734922644187,0,0.22237804384487,0.190225626112559,0,0,0.251335208800269,0,0.38992817423824,0,0,0,0.189667900953082,0.571242563048644,0,0.610953983535943,0,0.420814919341911,0,0,0,0,0,0,0,0,0.202860121388503,0.241177159752417,0.25462585178142,0,0.162135226775035,0.823684239564244,1.43768206527355,0.744281895337007,0.312037673114561,0.252578877947112,0,0,0,0.189491411770485,0,0,0,0.167506257441816,0.238043640886014,0.390267295715598,0.157635144106191,0.664394068946325,1.11618338060241,0,0.345369963731791,0.144649058581512,0,0,0,0.551873492609465,4.49541651965817,3.8679856575427,0,0,0.631016438832513,0.390438744296638,0.646270193198397,0,0,0,0.404810701674894,0.292255857911312,0.790575555893047,9.96096080907602,0.425820255624806,0,0.325773918707152,0,1.32745138339963,0,0,0,0.590603785761546,1.22974059177571,0.258428293168221,0.727067458955011,1.06949213515416,0,0,0,0,1.62054984628179,1.03486947026204,0.857348140126369,0.886701168211368,1.78368817602071,0.987294123612726,0.304464949114599,0,0,0.220528398054962,0,0.161464426695906,0,0,0,0.291480836629851,2.96680483216816,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0.436725127492355,0,0.743881101528023,0,0.129614973291793,0.621339313086926,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0.104859344425711,0,0,0,0,0.513554785824136,0,0.179026695667481,0.198681354781265,0,0.295379054349154,0,0,0,0,0,0,0.680191150845634,0,0.269141569828427,0,0.19318959403219,0,0,0,0,3.3885110557024,1.84130094602871,5.15605962095457,8.42080593484069,5.48066015816514,4.5323633843382,4.05013500139084,4.95353323546643,6.79713613476307,4.14208249401456,0.207574695168353,0.399024873401031,0.512200817262403,0.486213434136588,0.209613162627982,1.10306105070008,0.666740183404846,0.412070114477788,1.28367683836726,1.01078884705519,1.52087579934144,1.69763707247469,0.936415074698824,0.512201219238954,0.516919220600519,0.952587382566147,1.27472758539341,0.578727661391115,1.23625770240992,1.32479028120958,0.685738504770831,0.177475806159338,0.715308569841963,1.0174249164263,0.470546902076653,0.930760686808441,0.914639864363863,0.526139422875686,0.543216455383447,0.561142271657738,0.474540072496697,0.985044823755635,0.818462086339379,0.929621047115796,0.385813221962283,0.999242311751784,0.701794825336225,0.859484216193193,0,0.220591419119515,0 | |||
|short_description=p2@Ptprt | |||
}} |
Revision as of 22:44, 13 September 2013
Short description: | p2@Ptprt |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ptprt_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 35bp_to_ENSMUST00000109442_5end |
EntrezGene: | Ptprt |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.13e-19 | 23 |
neuroblast (sensu Vertebrata) | 6.13e-19 | 23 |
neuron | 1.78e-11 | 33 |
neuronal stem cell | 1.78e-11 | 33 |
neuroblast | 1.78e-11 | 33 |
electrically signaling cell | 1.78e-11 | 33 |
ectodermal cell | 3.86e-09 | 44 |
neurectodermal cell | 3.86e-09 | 44 |
electrically responsive cell | 6.91e-09 | 39 |
electrically active cell | 6.91e-09 | 39 |
neural cell | 1.88e-08 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.