FFCP PHASE1:Mm9::chr15:78729838..78729852,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20401|HGNC=|MCL_coexpression_id=88|UniProt=|association_with_transcript=-244bp_to_ENSMUST00000134703_5end|description=CAGE_peak_4_at_Sh3bp1_5end|id=chr15:78729838..78729852,+|ontology_enrichment_celltype=CL:0002563!1.05e-13!9;CL:0002251!1.05e-13!9;CL:0000239!4.04e-10!6;CL:0000677!4.04e-10!6;CL:0000212!4.04e-10!6;CL:0000584!4.04e-10!6;CL:0000075!1.67e-08!7;CL:0002076!2.62e-07!15|ontology_enrichment_celltype_v019_2=CL:0000239,2.28e-16,6;CL:0000677,2.28e-16,6;CL:0000584,2.28e-16,6;CL:0000075,4.54e-14,7;CL:0002563,5.37e-11,9;CL:0002251,5.37e-11,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!2.55e-22!43;UBERON:0001242!2.21e-19!13;UBERON:0000060!2.21e-19!13;UBERON:0001262!2.21e-19!13;UBERON:0004786!2.21e-19!13;UBERON:0000344!4.12e-19!15;UBERON:0005409!6.21e-19!59;UBERON:0003350!1.05e-13!9;UBERON:0004808!1.05e-13!9;UBERON:0001277!1.05e-13!9;UBERON:0000485!6.07e-13!11;UBERON:0001007!1.08e-10!128;UBERON:0001555!1.08e-10!128;UBERON:0007026!1.08e-10!128;UBERON:0004923!2.35e-10!24;UBERON:0004119!2.37e-10!130;UBERON:0000925!2.37e-10!130;UBERON:0006595!2.37e-10!130;UBERON:0004921!3.65e-10!126;UBERON:0004185!3.65e-10!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.24e-26,31;UBERON:0000344,1.75e-24,15;UBERON:0001242,5.71e-22,13;UBERON:0001262,5.71e-22,13;UBERON:0004786,5.71e-22,13;UBERON:0005409,6.24e-17,47;UBERON:0004923,5.00e-15,24;UBERON:0003350,5.37e-11,9;UBERON:0004808,5.37e-11,9;UBERON:0001277,5.37e-11,9;UBERON:0000485,4.94e-09,11;UBERON:0000331,1.21e-08,3;UBERON:0002116,1.21e-08,3;UBERON:0001204,1.21e-08,3;UBERON:0001168,1.21e-08,3;UBERON:0001007,2.02e-08,116;UBERON:0001555,2.02e-08,116;UBERON:0007026,2.02e-08,116;UBERON:0004119,3.01e-08,118;UBERON:0000925,3.01e-08,118;UBERON:0006595,3.01e-08,118;UBERON:0004921,2.85e-07,114;UBERON:0003199,7.23e-07,1|phase1_expression=0.160148847104794,2.09385244583617,0.454999239389536,12.0985684522732,12.0214975187123,1.00727563147134,0.934450562382103,0,0,0,0,0,0.171200729931206,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,1.14704640533585,1.14846392823004,0,0.646413698057667,1.52018735565099,1.51218077855958,0.443461021310609,0,0,0,0.288851619751275,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279182999001381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79928715803342,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,1.53274233125155,0,0,0,0.149790639404823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.62586296177317,2.3800550999719,0,0,0.38660238396628,0.605050573870028,0.22237804384487,0.380451252225118,0.474529061544512,0,0.251335208800269,0.596869416123452,0.19496408711912,1.79763881730844,1.94524244887225,2.58883655230677,0,0,0,0,0,0.210407459670956,0.189709611372772,0,0.156998727841375,0.493588655687202,0,0,0,0,0.202860121388503,0.241177159752417,0,0,0,0,1.43768206527355,0.372140947668503,0,0.252578877947112,0.179397413521912,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324016022465404,0,0,0.134864346384821,0.0826534557253359,0,0.518459893167171,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0.206035057238894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182927972872773,0,0,0,0.237270036248348,0.394017929502254,0,0.154936841185966,0,0,0,0,0,0,0|short_description=p4@Sh3bp1}} | ||
|EntrezGene=20401 | |||
|HGNC= | |||
|MCL_coexpression_id=88 | |||
|UniProt= | |||
|association_with_transcript=-244bp_to_ENSMUST00000134703_5end | |||
|description=CAGE_peak_4_at_Sh3bp1_5end | |||
|id=chr15:78729838..78729852,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.05e-13!9;CL:0002251!1.05e-13!9;CL:0000239!4.04e-10!6;CL:0000677!4.04e-10!6;CL:0000212!4.04e-10!6;CL:0000584!4.04e-10!6;CL:0000075!1.67e-08!7;CL:0002076!2.62e-07!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.28e-16,6;CL:0000677,2.28e-16,6;CL:0000584,2.28e-16,6;CL:0000075,4.54e-14,7;CL:0002563,5.37e-11,9;CL:0002251,5.37e-11,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.55e-22!43;UBERON:0001242!2.21e-19!13;UBERON:0000060!2.21e-19!13;UBERON:0001262!2.21e-19!13;UBERON:0004786!2.21e-19!13;UBERON:0000344!4.12e-19!15;UBERON:0005409!6.21e-19!59;UBERON:0003350!1.05e-13!9;UBERON:0004808!1.05e-13!9;UBERON:0001277!1.05e-13!9;UBERON:0000485!6.07e-13!11;UBERON:0001007!1.08e-10!128;UBERON:0001555!1.08e-10!128;UBERON:0007026!1.08e-10!128;UBERON:0004923!2.35e-10!24;UBERON:0004119!2.37e-10!130;UBERON:0000925!2.37e-10!130;UBERON:0006595!2.37e-10!130;UBERON:0004921!3.65e-10!126;UBERON:0004185!3.65e-10!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.24e-26,31;UBERON:0000344,1.75e-24,15;UBERON:0001242,5.71e-22,13;UBERON:0001262,5.71e-22,13;UBERON:0004786,5.71e-22,13;UBERON:0005409,6.24e-17,47;UBERON:0004923,5.00e-15,24;UBERON:0003350,5.37e-11,9;UBERON:0004808,5.37e-11,9;UBERON:0001277,5.37e-11,9;UBERON:0000485,4.94e-09,11;UBERON:0000331,1.21e-08,3;UBERON:0002116,1.21e-08,3;UBERON:0001204,1.21e-08,3;UBERON:0001168,1.21e-08,3;UBERON:0001007,2.02e-08,116;UBERON:0001555,2.02e-08,116;UBERON:0007026,2.02e-08,116;UBERON:0004119,3.01e-08,118;UBERON:0000925,3.01e-08,118;UBERON:0006595,3.01e-08,118;UBERON:0004921,2.85e-07,114;UBERON:0003199,7.23e-07,1 | |||
|phase1_expression=0.160148847104794,2.09385244583617,0.454999239389536,12.0985684522732,12.0214975187123,1.00727563147134,0.934450562382103,0,0,0,0,0,0.171200729931206,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,1.14704640533585,1.14846392823004,0,0.646413698057667,1.52018735565099,1.51218077855958,0.443461021310609,0,0,0,0.288851619751275,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279182999001381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79928715803342,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,1.53274233125155,0,0,0,0.149790639404823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.62586296177317,2.3800550999719,0,0,0.38660238396628,0.605050573870028,0.22237804384487,0.380451252225118,0.474529061544512,0,0.251335208800269,0.596869416123452,0.19496408711912,1.79763881730844,1.94524244887225,2.58883655230677,0,0,0,0,0,0.210407459670956,0.189709611372772,0,0.156998727841375,0.493588655687202,0,0,0,0,0.202860121388503,0.241177159752417,0,0,0,0,1.43768206527355,0.372140947668503,0,0.252578877947112,0.179397413521912,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324016022465404,0,0,0.134864346384821,0.0826534557253359,0,0.518459893167171,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0.206035057238894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182927972872773,0,0,0,0.237270036248348,0.394017929502254,0,0.154936841185966,0,0,0,0,0,0,0 | |||
|short_description=p4@Sh3bp1 | |||
}} |
Revision as of 11:08, 13 September 2013
Short description: | p4@Sh3bp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sh3bp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:88 |
Association with transcript: | -244bp_to_ENSMUST00000134703_5end |
EntrezGene: | Sh3bp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.28e-16 | 6 |
gut absorptive cell | 2.28e-16 | 6 |
enterocyte | 2.28e-16 | 6 |
columnar/cuboidal epithelial cell | 4.54e-14 | 7 |
intestinal epithelial cell | 5.37e-11 | 9 |
epithelial cell of alimentary canal | 5.37e-11 | 9 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.24e-26 | 31 |
mucosa | 1.75e-24 | 15 |
intestinal mucosa | 5.71e-22 | 13 |
wall of intestine | 5.71e-22 | 13 |
gastrointestinal system mucosa | 5.71e-22 | 13 |
gastrointestinal system | 6.24e-17 | 47 |
organ component layer | 5.00e-15 | 24 |
epithelium of mucosa | 5.37e-11 | 9 |
gastrointestinal system epithelium | 5.37e-11 | 9 |
intestinal epithelium | 5.37e-11 | 9 |
simple columnar epithelium | 4.94e-09 | 11 |
ileal mucosa | 1.21e-08 | 3 |
ileum | 1.21e-08 | 3 |
mucosa of small intestine | 1.21e-08 | 3 |
wall of small intestine | 1.21e-08 | 3 |
digestive system | 2.02e-08 | 116 |
digestive tract | 2.02e-08 | 116 |
primitive gut | 2.02e-08 | 116 |
endoderm-derived structure | 3.01e-08 | 118 |
endoderm | 3.01e-08 | 118 |
presumptive endoderm | 3.01e-08 | 118 |
subdivision of digestive tract | 2.85e-07 | 114 |
egg chamber | 7.23e-07 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.