FFCP PHASE1:Mm9::chr8:67653423..67653439,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=407795|HGNC=|MCL_coexpression_id=12|UniProt=|association_with_transcript=0bp_to_NR_033217,uc009lvi.2_5end|description=CAGE_peak_3_at_BC030870_5end|id=chr8:67653423..67653439,-|ontology_enrichment_celltype=CL:0002563!5.72e-10!9;CL:0002251!5.72e-10!9;CL:0002076!6.22e-09!15;CL:0000239!2.65e-07!6;CL:0000677!2.65e-07!6;CL:0000212!2.65e-07!6;CL:0000584!2.65e-07!6;CL:0000066!3.47e-07!25|ontology_enrichment_celltype_v019_2=CL:0002563,7.09e-18,9;CL:0002251,7.09e-18,9;CL:0002076,1.22e-14,15;CL:0000066,1.03e-13,25;CL:0000239,1.03e-12,6;CL:0000677,1.03e-12,6;CL:0000584,1.03e-12,6;CL:0000075,8.77e-11,7;CL:0000223,2.19e-10,20;CL:0000682,7.83e-08,3;CL:0002250,9.82e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!1.25e-27!59;UBERON:0000160!6.60e-25!43;UBERON:0001007!2.32e-17!128;UBERON:0001555!2.32e-17!128;UBERON:0007026!2.32e-17!128;UBERON:0004119!8.78e-17!130;UBERON:0000925!8.78e-17!130;UBERON:0006595!8.78e-17!130;UBERON:0000344!2.01e-16!15;UBERON:0004921!7.48e-16!126;UBERON:0004185!7.48e-16!126;UBERON:0001242!2.35e-14!13;UBERON:0000060!2.35e-14!13;UBERON:0001262!2.35e-14!13;UBERON:0004786!2.35e-14!13;UBERON:0003350!5.72e-10!9;UBERON:0004808!5.72e-10!9;UBERON:0001277!5.72e-10!9;UBERON:0004923!3.20e-08!24;UBERON:0000485!1.20e-07!11;UBERON:0005178!2.07e-07!17;UBERON:0005181!2.07e-07!17;UBERON:0002224!2.07e-07!17;UBERON:0000915!2.07e-07!17;UBERON:0008947!2.07e-07!17;UBERON:0003258!2.07e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.69e-53,31;UBERON:0005409,2.98e-48,47;UBERON:0000344,1.92e-30,15;UBERON:0001242,2.07e-26,13;UBERON:0001262,2.07e-26,13;UBERON:0004786,2.07e-26,13;UBERON:0001007,5.62e-21,116;UBERON:0001555,5.62e-21,116;UBERON:0007026,5.62e-21,116;UBERON:0004119,1.79e-20,118;UBERON:0000925,1.79e-20,118;UBERON:0006595,1.79e-20,118;UBERON:0004921,1.41e-18,114;UBERON:0003350,7.09e-18,9;UBERON:0004808,7.09e-18,9;UBERON:0001277,7.09e-18,9;UBERON:0004923,1.41e-17,24;UBERON:0000485,2.70e-14,11;UBERON:0002108,2.14e-09,4;UBERON:0000331,8.67e-08,3;UBERON:0002116,8.67e-08,3;UBERON:0001204,8.67e-08,3;UBERON:0001168,8.67e-08,3;UBERON:0011216,2.20e-07,194|phase1_expression=0,6.63053274514786,5.91499011206397,6.95667686005709,3.00537437967808,4.02910252588535,5.84031601488814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,7.99962113967033,4.5881856213434,8.6134794617253,6.46142994238612,7.32602191132023,9.5011709728187,8.06496415231778,4.8780712344167,0,0,0,4.62162591602039,4.48833542467929,2.85837098767317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0.865964164044856,1.26679932737549,2.52762222507392,0.79928715803342,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,5.59175283654366,0,0,6.38642638021478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2254949704005,8.72686869989696,0.213288250535234,0.232236671860439,2.44848176511977,4.03367049246685,4.44756087689741,4.94586627892654,7.11793592316767,6.42325923423642,3.01602250560323,4.17808591286417,2.53453313254856,3.59527763461689,6.48414149624083,7.76650965692032,0,0,0,0,0,0,0,0,0.156998727841375,0,0,0,0,0,0,0.482354319504834,0,0,0,0,0,0,0,0,0.179397413521912,0,0.923765950833023,0,0.162964976442026,0.509235257325564,0,0.335012514883631,0.238043640886014,0,0.788175720530955,0.664394068946325,0.637819074629948,0.491589944147214,1.03610989119537,0.433947175744535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590603785761546,0.922305443831782,2.06742634534577,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220528398054962,0,0,0,0,0,3.49777003955821,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,0.406638934253697,1.18805874903981,0.627264888043406,1.09181281873089,1.61837215661785,2.31429676030941,2.35580347785627,4.01806417204558,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0,0.183843508450014,0.44449345560323,0.206035057238894,0.320919209591815,0.252697211763798,0.25347929989024,0,0.187283014939765,0.192075457214608,0.402048282689293,0.476293691283074,0.463537303779422,0.192909220463705,0,0.441596760403192,0,0,0.715308569841963,0.436039249896986,0.282328141245992,0.423073039458382,0.182927972872773,0.526139422875686,0.271608227691724,0,0,0.394017929502254,0,0.154936841185966,0.578719832943424,0,0.701794825336225,0,0,0,0.231867835620421|short_description=p3@BC030870}} | ||
|EntrezGene=407795 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_NR_033217,uc009lvi.2_5end | |||
|description=CAGE_peak_3_at_BC030870_5end | |||
|id=chr8:67653423..67653439,- | |||
|ontology_enrichment_celltype=CL:0002563!5.72e-10!9;CL:0002251!5.72e-10!9;CL:0002076!6.22e-09!15;CL:0000239!2.65e-07!6;CL:0000677!2.65e-07!6;CL:0000212!2.65e-07!6;CL:0000584!2.65e-07!6;CL:0000066!3.47e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,7.09e-18,9;CL:0002251,7.09e-18,9;CL:0002076,1.22e-14,15;CL:0000066,1.03e-13,25;CL:0000239,1.03e-12,6;CL:0000677,1.03e-12,6;CL:0000584,1.03e-12,6;CL:0000075,8.77e-11,7;CL:0000223,2.19e-10,20;CL:0000682,7.83e-08,3;CL:0002250,9.82e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!1.25e-27!59;UBERON:0000160!6.60e-25!43;UBERON:0001007!2.32e-17!128;UBERON:0001555!2.32e-17!128;UBERON:0007026!2.32e-17!128;UBERON:0004119!8.78e-17!130;UBERON:0000925!8.78e-17!130;UBERON:0006595!8.78e-17!130;UBERON:0000344!2.01e-16!15;UBERON:0004921!7.48e-16!126;UBERON:0004185!7.48e-16!126;UBERON:0001242!2.35e-14!13;UBERON:0000060!2.35e-14!13;UBERON:0001262!2.35e-14!13;UBERON:0004786!2.35e-14!13;UBERON:0003350!5.72e-10!9;UBERON:0004808!5.72e-10!9;UBERON:0001277!5.72e-10!9;UBERON:0004923!3.20e-08!24;UBERON:0000485!1.20e-07!11;UBERON:0005178!2.07e-07!17;UBERON:0005181!2.07e-07!17;UBERON:0002224!2.07e-07!17;UBERON:0000915!2.07e-07!17;UBERON:0008947!2.07e-07!17;UBERON:0003258!2.07e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.69e-53,31;UBERON:0005409,2.98e-48,47;UBERON:0000344,1.92e-30,15;UBERON:0001242,2.07e-26,13;UBERON:0001262,2.07e-26,13;UBERON:0004786,2.07e-26,13;UBERON:0001007,5.62e-21,116;UBERON:0001555,5.62e-21,116;UBERON:0007026,5.62e-21,116;UBERON:0004119,1.79e-20,118;UBERON:0000925,1.79e-20,118;UBERON:0006595,1.79e-20,118;UBERON:0004921,1.41e-18,114;UBERON:0003350,7.09e-18,9;UBERON:0004808,7.09e-18,9;UBERON:0001277,7.09e-18,9;UBERON:0004923,1.41e-17,24;UBERON:0000485,2.70e-14,11;UBERON:0002108,2.14e-09,4;UBERON:0000331,8.67e-08,3;UBERON:0002116,8.67e-08,3;UBERON:0001204,8.67e-08,3;UBERON:0001168,8.67e-08,3;UBERON:0011216,2.20e-07,194 | |||
|phase1_expression=0,6.63053274514786,5.91499011206397,6.95667686005709,3.00537437967808,4.02910252588535,5.84031601488814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,7.99962113967033,4.5881856213434,8.6134794617253,6.46142994238612,7.32602191132023,9.5011709728187,8.06496415231778,4.8780712344167,0,0,0,4.62162591602039,4.48833542467929,2.85837098767317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0.865964164044856,1.26679932737549,2.52762222507392,0.79928715803342,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,5.59175283654366,0,0,6.38642638021478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2254949704005,8.72686869989696,0.213288250535234,0.232236671860439,2.44848176511977,4.03367049246685,4.44756087689741,4.94586627892654,7.11793592316767,6.42325923423642,3.01602250560323,4.17808591286417,2.53453313254856,3.59527763461689,6.48414149624083,7.76650965692032,0,0,0,0,0,0,0,0,0.156998727841375,0,0,0,0,0,0,0.482354319504834,0,0,0,0,0,0,0,0,0.179397413521912,0,0.923765950833023,0,0.162964976442026,0.509235257325564,0,0.335012514883631,0.238043640886014,0,0.788175720530955,0.664394068946325,0.637819074629948,0.491589944147214,1.03610989119537,0.433947175744535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590603785761546,0.922305443831782,2.06742634534577,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220528398054962,0,0,0,0,0,3.49777003955821,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,0.406638934253697,1.18805874903981,0.627264888043406,1.09181281873089,1.61837215661785,2.31429676030941,2.35580347785627,4.01806417204558,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0,0.183843508450014,0.44449345560323,0.206035057238894,0.320919209591815,0.252697211763798,0.25347929989024,0,0.187283014939765,0.192075457214608,0.402048282689293,0.476293691283074,0.463537303779422,0.192909220463705,0,0.441596760403192,0,0,0.715308569841963,0.436039249896986,0.282328141245992,0.423073039458382,0.182927972872773,0.526139422875686,0.271608227691724,0,0,0.394017929502254,0,0.154936841185966,0.578719832943424,0,0.701794825336225,0,0,0,0.231867835620421 | |||
|short_description=p3@BC030870 | |||
}} |
Revision as of 15:52, 14 September 2013
Short description: | p3@BC030870 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_BC030870_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 0bp_to_NR_033217, uc009lvi.2_5end |
EntrezGene: | BC030870 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.09e-18 | 9 |
epithelial cell of alimentary canal | 7.09e-18 | 9 |
endo-epithelial cell | 1.22e-14 | 15 |
epithelial cell | 1.03e-13 | 25 |
brush border epithelial cell | 1.03e-12 | 6 |
gut absorptive cell | 1.03e-12 | 6 |
enterocyte | 1.03e-12 | 6 |
columnar/cuboidal epithelial cell | 8.77e-11 | 7 |
endodermal cell | 2.19e-10 | 20 |
M cell of gut | 7.83e-08 | 3 |
intestinal crypt stem cell | 9.82e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.69e-53 | 31 |
gastrointestinal system | 2.98e-48 | 47 |
mucosa | 1.92e-30 | 15 |
intestinal mucosa | 2.07e-26 | 13 |
wall of intestine | 2.07e-26 | 13 |
gastrointestinal system mucosa | 2.07e-26 | 13 |
digestive system | 5.62e-21 | 116 |
digestive tract | 5.62e-21 | 116 |
primitive gut | 5.62e-21 | 116 |
endoderm-derived structure | 1.79e-20 | 118 |
endoderm | 1.79e-20 | 118 |
presumptive endoderm | 1.79e-20 | 118 |
subdivision of digestive tract | 1.41e-18 | 114 |
epithelium of mucosa | 7.09e-18 | 9 |
gastrointestinal system epithelium | 7.09e-18 | 9 |
intestinal epithelium | 7.09e-18 | 9 |
organ component layer | 1.41e-17 | 24 |
simple columnar epithelium | 2.70e-14 | 11 |
small intestine | 2.14e-09 | 4 |
ileal mucosa | 8.67e-08 | 3 |
ileum | 8.67e-08 | 3 |
mucosa of small intestine | 8.67e-08 | 3 |
wall of small intestine | 8.67e-08 | 3 |
organ system subdivision | 2.20e-07 | 194 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.