FFCP PHASE1:Mm9::chr17:28954623..28954637,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=12|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:28954623..28954637,+|id=chr17:28954623..28954637,+|ontology_enrichment_celltype=CL:0000239!5.97e-07!6;CL:0000677!5.97e-07!6;CL:0000212!5.97e-07!6;CL:0000584!5.97e-07!6;CL:0002563!8.66e-07!9;CL:0002251!8.66e-07!9|ontology_enrichment_celltype_v019_2=CL:0000239,2.62e-16,6;CL:0000677,2.62e-16,6;CL:0000584,2.62e-16,6;CL:0000075,6.88e-14,7;CL:0002563,1.17e-10,9;CL:0002251,1.17e-10,9;CL:0000682,2.74e-08,3;CL:0000066,2.73e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!9.64e-15!43;UBERON:0005409!2.17e-13!59;UBERON:0000344!4.63e-12!15;UBERON:0004923!4.86e-11!24;UBERON:0001242!1.76e-10!13;UBERON:0000060!1.76e-10!13;UBERON:0001262!1.76e-10!13;UBERON:0004786!1.76e-10!13;UBERON:0003350!8.66e-07!9;UBERON:0004808!8.66e-07!9;UBERON:0001277!8.66e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.58e-52,31;UBERON:0005409,6.86e-36,47;UBERON:0000344,2.91e-24,15;UBERON:0001242,4.67e-20,13;UBERON:0001262,4.67e-20,13;UBERON:0004786,4.67e-20,13;UBERON:0001007,7.84e-15,116;UBERON:0001555,7.84e-15,116;UBERON:0007026,7.84e-15,116;UBERON:0004119,1.76e-14,118;UBERON:0000925,1.76e-14,118;UBERON:0006595,1.76e-14,118;UBERON:0004923,3.13e-14,24;UBERON:0004921,9.47e-13,114;UBERON:0002108,1.71e-11,4;UBERON:0003350,1.17e-10,9;UBERON:0004808,1.17e-10,9;UBERON:0001277,1.17e-10,9;UBERON:0000331,5.24e-09,3;UBERON:0002116,5.24e-09,3;UBERON:0001204,5.24e-09,3;UBERON:0001168,5.24e-09,3;UBERON:0000485,1.34e-08,11|phase1_expression=0,4.53668029931169,2.72999543633722,4.83942738090928,5.50985302940982,1.17515490338323,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,0.0850432901510698,0,0,1.27993938234725,1.60586496747019,3.44539178469012,1.7230479846363,1.29282739611533,4.75058548640935,3.78045194639896,1.99557459589774,0,0,0,0,0.664938581433969,0.204169356262369,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,0,0,0.633831403506179,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0.135005938331691,0.210324961351382,0,0,0,0.0958454710182364,0,0,0.255374676170375,0,0,0,0,0,0,0,0,0.142371680799103,0,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0.173485326766136,0,0,0.150722640552623,0.23517741427141,0.125666591329675,0.247194967734374,0,0.884610551949874,0.323533699894818,0,0,1.86391761218122,0,0,5.36459815938042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,6.93879444265976,6.08236303326152,0,0,0.515469845288373,1.4117846723634,2.00140239460383,4.56541502670142,5.21981967698963,4.11747386810027,2.26201687920243,4.77495532898762,4.09424582950152,4.49409704327111,3.6743468478698,3.58454291857861,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0.25462585178142,0,0,0,2.87536413054709,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0.141940085208269,0,0.162886959353576,0,0,0,0,0,0,0,0.775284879504663,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0.164549020602121,0,0.469343416127421,0.21183207086382,0,0,0,0,0,0,4.08073171281791,0,0,0,0,0,0.27338845544205,0.228778173206523,0,0,0,0,0,0,0.216010681643603,0,0.218362563746178,0.134864346384821,0.0826534557253359,0,4.27729411862916,0,0,0,0,0,0,0,0.352071715937262,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0.0974578807397524,0.0962118416403295,0.116876902181569,0,0,0,0,0,0.187682475451182,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.44449345560323,0.206035057238894,0,0.505394423527595,0.25347929989024,0,0.187283014939765,0.576226371643824,0.459483751644906,0,0.695305955669133,0.192909220463705,0,0.294397840268795,1.02860775715625,0.177475806159338,0.238436189947321,0.290692833264657,0.0941093804153306,0.169229215783353,0.73171189149109,0.263069711437843,0.271608227691724,0,0.355905054372522,0.197008964751127,0,0.619747364743864,0.385813221962283,0,0.467863216890817,0,0,0.220591419119515,0|short_description=p@chr17:28954623..28954637,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:28954623..28954637,+ | |||
|id=chr17:28954623..28954637,+ | |||
|ontology_enrichment_celltype=CL:0000239!5.97e-07!6;CL:0000677!5.97e-07!6;CL:0000212!5.97e-07!6;CL:0000584!5.97e-07!6;CL:0002563!8.66e-07!9;CL:0002251!8.66e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.62e-16,6;CL:0000677,2.62e-16,6;CL:0000584,2.62e-16,6;CL:0000075,6.88e-14,7;CL:0002563,1.17e-10,9;CL:0002251,1.17e-10,9;CL:0000682,2.74e-08,3;CL:0000066,2.73e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!9.64e-15!43;UBERON:0005409!2.17e-13!59;UBERON:0000344!4.63e-12!15;UBERON:0004923!4.86e-11!24;UBERON:0001242!1.76e-10!13;UBERON:0000060!1.76e-10!13;UBERON:0001262!1.76e-10!13;UBERON:0004786!1.76e-10!13;UBERON:0003350!8.66e-07!9;UBERON:0004808!8.66e-07!9;UBERON:0001277!8.66e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.58e-52,31;UBERON:0005409,6.86e-36,47;UBERON:0000344,2.91e-24,15;UBERON:0001242,4.67e-20,13;UBERON:0001262,4.67e-20,13;UBERON:0004786,4.67e-20,13;UBERON:0001007,7.84e-15,116;UBERON:0001555,7.84e-15,116;UBERON:0007026,7.84e-15,116;UBERON:0004119,1.76e-14,118;UBERON:0000925,1.76e-14,118;UBERON:0006595,1.76e-14,118;UBERON:0004923,3.13e-14,24;UBERON:0004921,9.47e-13,114;UBERON:0002108,1.71e-11,4;UBERON:0003350,1.17e-10,9;UBERON:0004808,1.17e-10,9;UBERON:0001277,1.17e-10,9;UBERON:0000331,5.24e-09,3;UBERON:0002116,5.24e-09,3;UBERON:0001204,5.24e-09,3;UBERON:0001168,5.24e-09,3;UBERON:0000485,1.34e-08,11 | |||
|phase1_expression=0,4.53668029931169,2.72999543633722,4.83942738090928,5.50985302940982,1.17515490338323,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,0.0850432901510698,0,0,1.27993938234725,1.60586496747019,3.44539178469012,1.7230479846363,1.29282739611533,4.75058548640935,3.78045194639896,1.99557459589774,0,0,0,0,0.664938581433969,0.204169356262369,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,0,0,0.633831403506179,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0.135005938331691,0.210324961351382,0,0,0,0.0958454710182364,0,0,0.255374676170375,0,0,0,0,0,0,0,0,0.142371680799103,0,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0.173485326766136,0,0,0.150722640552623,0.23517741427141,0.125666591329675,0.247194967734374,0,0.884610551949874,0.323533699894818,0,0,1.86391761218122,0,0,5.36459815938042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,6.93879444265976,6.08236303326152,0,0,0.515469845288373,1.4117846723634,2.00140239460383,4.56541502670142,5.21981967698963,4.11747386810027,2.26201687920243,4.77495532898762,4.09424582950152,4.49409704327111,3.6743468478698,3.58454291857861,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0.25462585178142,0,0,0,2.87536413054709,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0.141940085208269,0,0.162886959353576,0,0,0,0,0,0,0,0.775284879504663,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0.164549020602121,0,0.469343416127421,0.21183207086382,0,0,0,0,0,0,4.08073171281791,0,0,0,0,0,0.27338845544205,0.228778173206523,0,0,0,0,0,0,0.216010681643603,0,0.218362563746178,0.134864346384821,0.0826534557253359,0,4.27729411862916,0,0,0,0,0,0,0,0.352071715937262,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0.0974578807397524,0.0962118416403295,0.116876902181569,0,0,0,0,0,0.187682475451182,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.44449345560323,0.206035057238894,0,0.505394423527595,0.25347929989024,0,0.187283014939765,0.576226371643824,0.459483751644906,0,0.695305955669133,0.192909220463705,0,0.294397840268795,1.02860775715625,0.177475806159338,0.238436189947321,0.290692833264657,0.0941093804153306,0.169229215783353,0.73171189149109,0.263069711437843,0.271608227691724,0,0.355905054372522,0.197008964751127,0,0.619747364743864,0.385813221962283,0,0.467863216890817,0,0,0.220591419119515,0 | |||
|short_description=p@chr17:28954623..28954637,+ | |||
}} |
Revision as of 13:58, 13 September 2013
Short description: | p@chr17:28954623..28954637, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:28954623..28954637, + |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.62e-16 | 6 |
gut absorptive cell | 2.62e-16 | 6 |
enterocyte | 2.62e-16 | 6 |
columnar/cuboidal epithelial cell | 6.88e-14 | 7 |
intestinal epithelial cell | 1.17e-10 | 9 |
epithelial cell of alimentary canal | 1.17e-10 | 9 |
M cell of gut | 2.74e-08 | 3 |
epithelial cell | 2.73e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.58e-52 | 31 |
gastrointestinal system | 6.86e-36 | 47 |
mucosa | 2.91e-24 | 15 |
intestinal mucosa | 4.67e-20 | 13 |
wall of intestine | 4.67e-20 | 13 |
gastrointestinal system mucosa | 4.67e-20 | 13 |
digestive system | 7.84e-15 | 116 |
digestive tract | 7.84e-15 | 116 |
primitive gut | 7.84e-15 | 116 |
endoderm-derived structure | 1.76e-14 | 118 |
endoderm | 1.76e-14 | 118 |
presumptive endoderm | 1.76e-14 | 118 |
organ component layer | 3.13e-14 | 24 |
subdivision of digestive tract | 9.47e-13 | 114 |
small intestine | 1.71e-11 | 4 |
epithelium of mucosa | 1.17e-10 | 9 |
gastrointestinal system epithelium | 1.17e-10 | 9 |
intestinal epithelium | 1.17e-10 | 9 |
ileal mucosa | 5.24e-09 | 3 |
ileum | 5.24e-09 | 3 |
mucosa of small intestine | 5.24e-09 | 3 |
wall of small intestine | 5.24e-09 | 3 |
simple columnar epithelium | 1.34e-08 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.