FFCP PHASE1:Mm9::chr17:37027078..37027106,-: Difference between revisions
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|id=chr17:37027078..37027106,- | |id=chr17:37027078..37027106,- | ||
|ontology_enrichment_celltype=CL:0002563!2.43e-14!9;CL:0002251!2.43e-14!9;CL:0000239!7.31e-11!6;CL:0000677!7.31e-11!6;CL:0000212!7.31e-11!6;CL:0000584!7.31e-11!6;CL:0000075!3.85e-09!7;CL:0002076!1.03e-07!15;CL:0000066!2.04e-07!25 | |ontology_enrichment_celltype=CL:0002563!2.43e-14!9;CL:0002251!2.43e-14!9;CL:0000239!7.31e-11!6;CL:0000677!7.31e-11!6;CL:0000212!7.31e-11!6;CL:0000584!7.31e-11!6;CL:0000075!3.85e-09!7;CL:0002076!1.03e-07!15;CL:0000066!2.04e-07!25 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.88e-23,9;CL:0002251,2.88e-23,9;CL:0000239,2.38e-17,6;CL:0000677,2.38e-17,6;CL:0000584,2.38e-17,6;CL:0000075,9.13e-15,7;CL:0000066,1.06e-13,25;CL:0002076,2.66e-13,15;CL:0000682,1.42e-09,3;CL:0000223,1.44e-09,20;CL:0002250,1.45e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.00e-27!43;UBERON:0005409!2.24e-26!59;UBERON:0000344!1.67e-23!15;UBERON:0001242!1.41e-20!13;UBERON:0000060!1.41e-20!13;UBERON:0001262!1.41e-20!13;UBERON:0004786!1.41e-20!13;UBERON:0004923!1.47e-16!24;UBERON:0003350!2.43e-14!9;UBERON:0004808!2.43e-14!9;UBERON:0001277!2.43e-14!9;UBERON:0000485!2.56e-11!11;UBERON:0001007!1.19e-09!128;UBERON:0001555!1.19e-09!128;UBERON:0007026!1.19e-09!128;UBERON:0004119!2.43e-09!130;UBERON:0000925!2.43e-09!130;UBERON:0006595!2.43e-09!130;UBERON:0004921!2.46e-08!126;UBERON:0004185!2.46e-08!126 | |ontology_enrichment_uberon=UBERON:0000160!2.00e-27!43;UBERON:0005409!2.24e-26!59;UBERON:0000344!1.67e-23!15;UBERON:0001242!1.41e-20!13;UBERON:0000060!1.41e-20!13;UBERON:0001262!1.41e-20!13;UBERON:0004786!1.41e-20!13;UBERON:0004923!1.47e-16!24;UBERON:0003350!2.43e-14!9;UBERON:0004808!2.43e-14!9;UBERON:0001277!2.43e-14!9;UBERON:0000485!2.56e-11!11;UBERON:0001007!1.19e-09!128;UBERON:0001555!1.19e-09!128;UBERON:0007026!1.19e-09!128;UBERON:0004119!2.43e-09!130;UBERON:0000925!2.43e-09!130;UBERON:0006595!2.43e-09!130;UBERON:0004921!2.46e-08!126;UBERON:0004185!2.46e-08!126 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.39e-53,31;UBERON:0000344,6.79e-39,15;UBERON:0005409,2.46e-36,47;UBERON:0001242,6.76e-34,13;UBERON:0001262,6.76e-34,13;UBERON:0004786,6.76e-34,13;UBERON:0004923,4.49e-26,24;UBERON:0003350,2.88e-23,9;UBERON:0004808,2.88e-23,9;UBERON:0001277,2.88e-23,9;UBERON:0000485,9.74e-19,11;UBERON:0001007,9.21e-14,116;UBERON:0001555,9.21e-14,116;UBERON:0007026,9.21e-14,116;UBERON:0004119,2.00e-13,118;UBERON:0000925,2.00e-13,118;UBERON:0006595,2.00e-13,118;UBERON:0004921,1.27e-11,114;UBERON:0002108,1.69e-11,4;UBERON:0000331,2.87e-09,3;UBERON:0002116,2.87e-09,3;UBERON:0001204,2.87e-09,3;UBERON:0001168,2.87e-09,3 | |||
|phase1_expression=0,43.6219259549201,49.1399178540699,39.3203474698879,31.5564309866199,23.1673395238408,17.7545606852599,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,0.17008658030214,0,0,21.5989770771099,20.6468352960453,38.4735415957064,29.2918157388171,31.6742712048257,30.0237002741071,23.4388020676736,26.8293917892919,0,0,0,1.73310971850765,1.66234645358492,1.22501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983110940922263,0,0,0,0,0,0,0,0,0,0,4.68153906848146,0,0,0,0,0,0,0,0,1.23597483867187,0,0,0,0,0,3.72783522436244,0,0,25.5457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.2498859666831,24.3294521330461,0,0,0.515469845288373,0.403367049246685,0.22237804384487,3.23383564391351,13.7613427847908,3.29397909448022,3.51869292320377,4.37704238490532,4.28920991662064,14.3811105384675,12.752144942607,13.1433240347882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0.775284879504663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2018292820448,0,0,0,0,0,0.136694227721025,0,0,0,0,0,0,0,0.216010681643603,0,0,0.134864346384821,0.165306911450672,0.523511883968059,8.68420321055012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0.73260649706906,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0.0936415074698824,0.0640251524048693,0.114870937911227,0.476293691283074,0.115884325944855,0,0,0.147198920134397,0,0,0,0,0.0941093804153306,0,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0.214871054048298,0,0.220591419119515,0 | |phase1_expression=0,43.6219259549201,49.1399178540699,39.3203474698879,31.5564309866199,23.1673395238408,17.7545606852599,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,0.17008658030214,0,0,21.5989770771099,20.6468352960453,38.4735415957064,29.2918157388171,31.6742712048257,30.0237002741071,23.4388020676736,26.8293917892919,0,0,0,1.73310971850765,1.66234645358492,1.22501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983110940922263,0,0,0,0,0,0,0,0,0,0,4.68153906848146,0,0,0,0,0,0,0,0,1.23597483867187,0,0,0,0,0,3.72783522436244,0,0,25.5457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.2498859666831,24.3294521330461,0,0,0.515469845288373,0.403367049246685,0.22237804384487,3.23383564391351,13.7613427847908,3.29397909448022,3.51869292320377,4.37704238490532,4.28920991662064,14.3811105384675,12.752144942607,13.1433240347882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0.775284879504663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2018292820448,0,0,0,0,0,0.136694227721025,0,0,0,0,0,0,0,0.216010681643603,0,0,0.134864346384821,0.165306911450672,0.523511883968059,8.68420321055012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0.73260649706906,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0.0936415074698824,0.0640251524048693,0.114870937911227,0.476293691283074,0.115884325944855,0,0,0.147198920134397,0,0,0,0,0.0941093804153306,0,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0.214871054048298,0,0.220591419119515,0 | ||
|short_description=p1@Trim40 | |short_description=p1@Trim40 | ||
}} | }} |
Revision as of 14:38, 14 November 2012
Short description: | p1@Trim40 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Trim40_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -8bp_to_NM_001033235, NM_001172168, uc008clk.2, uc012asy.1_5end |
EntrezGene: | Trim40 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.88e-23 | 9 |
epithelial cell of alimentary canal | 2.88e-23 | 9 |
brush border epithelial cell | 2.38e-17 | 6 |
gut absorptive cell | 2.38e-17 | 6 |
enterocyte | 2.38e-17 | 6 |
columnar/cuboidal epithelial cell | 9.13e-15 | 7 |
epithelial cell | 1.06e-13 | 25 |
endo-epithelial cell | 2.66e-13 | 15 |
M cell of gut | 1.42e-09 | 3 |
endodermal cell | 1.44e-09 | 20 |
intestinal crypt stem cell | 1.45e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.39e-53 | 31 |
mucosa | 6.79e-39 | 15 |
gastrointestinal system | 2.46e-36 | 47 |
intestinal mucosa | 6.76e-34 | 13 |
wall of intestine | 6.76e-34 | 13 |
gastrointestinal system mucosa | 6.76e-34 | 13 |
organ component layer | 4.49e-26 | 24 |
epithelium of mucosa | 2.88e-23 | 9 |
gastrointestinal system epithelium | 2.88e-23 | 9 |
intestinal epithelium | 2.88e-23 | 9 |
simple columnar epithelium | 9.74e-19 | 11 |
digestive system | 9.21e-14 | 116 |
digestive tract | 9.21e-14 | 116 |
primitive gut | 9.21e-14 | 116 |
endoderm-derived structure | 2.00e-13 | 118 |
endoderm | 2.00e-13 | 118 |
presumptive endoderm | 2.00e-13 | 118 |
subdivision of digestive tract | 1.27e-11 | 114 |
small intestine | 1.69e-11 | 4 |
ileal mucosa | 2.87e-09 | 3 |
ileum | 2.87e-09 | 3 |
mucosa of small intestine | 2.87e-09 | 3 |
wall of small intestine | 2.87e-09 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.