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MCL coexpression mm9:3524: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005256!1.01e-11!45;UBERON:0009854!1.06e-11!23;UBERON:0009856!1.06e-11!23;UBERON:0002365!1.56e-11!25;UBERON:0002330!1.56e-11!25;UBERON:0002107!3.18e-11!22;UBERON:0007499!3.18e-11!22;UBERON:0006925!3.18e-11!22;UBERON:0009497!3.18e-11!22;UBERON:0000015!3.18e-11!22;UBERON:0002423!3.18e-11!22;UBERON:0006235!3.18e-11!22;UBERON:0008835!3.18e-11!22;UBERON:0003894!3.18e-11!22;UBERON:0004161!3.18e-11!22;UBERON:0008836!3.18e-11!22;UBERON:0003104!6.57e-11!61;UBERON:0009142!6.57e-11!61;UBERON:0005172!9.86e-11!49;UBERON:0005173!9.86e-11!49;UBERON:0002417!9.86e-11!49;UBERON:0000916!9.86e-11!49;UBERON:0005409!1.08e-10!47;UBERON:0000160!1.09e-09!31;UBERON:0004119!7.39e-08!118;UBERON:0000925!7.39e-08!118;UBERON:0006595!7.39e-08!118;UBERON:0001007!2.82e-07!116;UBERON:0001555!2.82e-07!116;UBERON:0007026!2.82e-07!116;UBERON:0004923!4.61e-07!24;UBERON:0009569!7.29e-07!66
}}
}}

Revision as of 20:12, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr5:67651964..67651980,+p3@Tmem33
Mm9::chr5:67651983..67652018,+p1@Tmem33
Mm9::chr5:67652033..67652053,+p5@Tmem33


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
trunk mesenchyme1.01e-1145
digestive tract diverticulum1.06e-1123
sac1.06e-1123
exocrine gland1.56e-1125
exocrine system1.56e-1125
liver3.18e-1122
epithelial sac3.18e-1122
digestive gland3.18e-1122
epithelium of foregut-midgut junction3.18e-1122
anatomical boundary3.18e-1122
hepatobiliary system3.18e-1122
foregut-midgut junction3.18e-1122
hepatic diverticulum3.18e-1122
liver primordium3.18e-1122
septum transversum3.18e-1122
liver bud3.18e-1122
mesenchyme6.57e-1161
entire embryonic mesenchyme6.57e-1161
abdomen element9.86e-1149
abdominal segment element9.86e-1149
abdominal segment of trunk9.86e-1149
abdomen9.86e-1149
gastrointestinal system1.08e-1047
intestine1.09e-0931
endoderm-derived structure7.39e-08118
endoderm7.39e-08118
presumptive endoderm7.39e-08118
digestive system2.82e-07116
digestive tract2.82e-07116
primitive gut2.82e-07116
organ component layer4.61e-0724
subdivision of trunk7.29e-0766


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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