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MCL coexpression mm9:1297: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0005914;spot adherens junction;0.0135864354475415;56460!GO:0004707;MAP kinase activity;0.031691261096473;26415!GO:0030057;desmosome;0.031691261096473;56460!GO:0005913;cell-cell adherens junction;0.0441268835642363;56460!
|gostat_on_MCL_coexpression=GO:0005914;spot adherens junction;0.0135864354475415;56460!GO:0004707;MAP kinase activity;0.031691261096473;26415!GO:0030057;desmosome;0.031691261096473;56460!GO:0005913;cell-cell adherens junction;0.0441268835642363;56460!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!9.61e-17!118;UBERON:0000925!9.61e-17!118;UBERON:0006595!9.61e-17!118;UBERON:0005409!2.33e-16!47;UBERON:0001007!8.40e-16!116;UBERON:0001555!8.40e-16!116;UBERON:0007026!8.40e-16!116;UBERON:0000160!1.19e-15!31;UBERON:0004921!9.66e-15!114;UBERON:0000344!3.40e-10!15;UBERON:0001242!5.05e-09!13;UBERON:0000060!5.05e-09!13;UBERON:0001262!5.05e-09!13;UBERON:0004786!5.05e-09!13;UBERON:0004923!6.61e-09!24
}}
}}

Revision as of 16:39, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:61497926..61497956,+p3@Fam83g
Mm9::chr11:61497958..61497973,+p1@Fam83g
Mm9::chr15:75839870..75839909,-p1@Fam83h
Mm9::chr17:28906327..28906330,+p2@Mapk13
Mm9::chr7:148265658..148265680,+p1@Pkp3
Mm9::chr7:148265683..148265705,+p2@Pkp3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005914spot adherens junction0.0135864354475415
GO:0004707MAP kinase activity0.031691261096473
GO:0030057desmosome0.031691261096473
GO:0005913cell-cell adherens junction0.0441268835642363



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure9.61e-17118
endoderm9.61e-17118
presumptive endoderm9.61e-17118
gastrointestinal system2.33e-1647
digestive system8.40e-16116
digestive tract8.40e-16116
primitive gut8.40e-16116
intestine1.19e-1531
subdivision of digestive tract9.66e-15114
mucosa3.40e-1015
intestinal mucosa5.05e-0913
anatomical wall5.05e-0913
wall of intestine5.05e-0913
gastrointestinal system mucosa5.05e-0913
organ component layer6.61e-0924


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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