FFCP PHASE1:Hg19::chr19:55580838..55580923,-: Difference between revisions
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|ontology_enrichment_celltype=CL:0000066!2.55e-09!254 | |ontology_enrichment_celltype=CL:0000066!2.55e-09!254 | ||
|ontology_enrichment_celltype_v019=CL:0000349;7.10e-07;19 | |ontology_enrichment_celltype_v019=CL:0000349;7.10e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.94e-08,253;CL:0000349,5.49e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.74e-10;29 | |ontology_enrichment_development_v019=UBERON:0008947;1.74e-10;29 | ||
|ontology_enrichment_disease=DOID:305!2.98e-21!106;DOID:0050687!7.00e-14!143;DOID:299!2.12e-08!25 | |ontology_enrichment_disease=DOID:305!2.98e-21!106;DOID:0050687!7.00e-14!143;DOID:299!2.12e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:305;1.46e-07;106!DOID:299;1.98e-07;25 | |ontology_enrichment_disease_v019=DOID:305;1.46e-07;106!DOID:299;1.98e-07;25 | ||
|ontology_enrichment_disease_v019_2=DOID:305,6.56e-21,106;DOID:0050687,5.92e-14,143;DOID:299,2.11e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.66e-21!115;UBERON:0000062!1.68e-13!511;UBERON:0000064!8.20e-13!219;UBERON:0004921!1.21e-11!129;UBERON:0004185!1.21e-11!129;UBERON:0001049!1.68e-11!57;UBERON:0005068!1.68e-11!57;UBERON:0006241!1.68e-11!57;UBERON:0007135!1.68e-11!57;UBERON:0000077!2.12e-11!130;UBERON:0004119!3.16e-11!169;UBERON:0000925!3.16e-11!169;UBERON:0006595!3.16e-11!169;UBERON:0003080!5.32e-11!42;UBERON:0002780!8.07e-11!41;UBERON:0001890!8.07e-11!41;UBERON:0006240!8.07e-11!41;UBERON:0002616!8.15e-10!59;UBERON:0001007!1.88e-09!155;UBERON:0001555!1.88e-09!155;UBERON:0007026!1.88e-09!155;UBERON:0000464!2.58e-09!104;UBERON:0000955!4.69e-09!69;UBERON:0006238!4.69e-09!69;UBERON:0001017!1.22e-08!82;UBERON:0001041!1.57e-08!98;UBERON:0008947!1.80e-08!38;UBERON:0003258!1.80e-08!38;UBERON:0000065!2.04e-08!53;UBERON:0005743!2.16e-08!86;UBERON:0003075!2.26e-08!86;UBERON:0007284!2.26e-08!86;UBERON:0002619!5.86e-08!22;UBERON:0001004!6.98e-08!72;UBERON:0002020!7.87e-08!34;UBERON:0003528!7.87e-08!34;UBERON:0002346!8.86e-08!90;UBERON:0001893!1.10e-07!34;UBERON:0001950!1.16e-07!20;UBERON:0001869!1.41e-07!32;UBERON:0005157!2.00e-07!51;UBERON:0002791!2.99e-07!33;UBERON:0005631!3.72e-07!14;UBERON:0000158!3.72e-07!14;UBERON:0000072!6.45e-07!46;UBERON:0000468!7.02e-07!659;UBERON:0000466!7.34e-07!126;UBERON:0000481!8.74e-07!347;UBERON:0000475!9.24e-07!365 | |ontology_enrichment_uberon=UBERON:0007023!1.66e-21!115;UBERON:0000062!1.68e-13!511;UBERON:0000064!8.20e-13!219;UBERON:0004921!1.21e-11!129;UBERON:0004185!1.21e-11!129;UBERON:0001049!1.68e-11!57;UBERON:0005068!1.68e-11!57;UBERON:0006241!1.68e-11!57;UBERON:0007135!1.68e-11!57;UBERON:0000077!2.12e-11!130;UBERON:0004119!3.16e-11!169;UBERON:0000925!3.16e-11!169;UBERON:0006595!3.16e-11!169;UBERON:0003080!5.32e-11!42;UBERON:0002780!8.07e-11!41;UBERON:0001890!8.07e-11!41;UBERON:0006240!8.07e-11!41;UBERON:0002616!8.15e-10!59;UBERON:0001007!1.88e-09!155;UBERON:0001555!1.88e-09!155;UBERON:0007026!1.88e-09!155;UBERON:0000464!2.58e-09!104;UBERON:0000955!4.69e-09!69;UBERON:0006238!4.69e-09!69;UBERON:0001017!1.22e-08!82;UBERON:0001041!1.57e-08!98;UBERON:0008947!1.80e-08!38;UBERON:0003258!1.80e-08!38;UBERON:0000065!2.04e-08!53;UBERON:0005743!2.16e-08!86;UBERON:0003075!2.26e-08!86;UBERON:0007284!2.26e-08!86;UBERON:0002619!5.86e-08!22;UBERON:0001004!6.98e-08!72;UBERON:0002020!7.87e-08!34;UBERON:0003528!7.87e-08!34;UBERON:0002346!8.86e-08!90;UBERON:0001893!1.10e-07!34;UBERON:0001950!1.16e-07!20;UBERON:0001869!1.41e-07!32;UBERON:0005157!2.00e-07!51;UBERON:0002791!2.99e-07!33;UBERON:0005631!3.72e-07!14;UBERON:0000158!3.72e-07!14;UBERON:0000072!6.45e-07!46;UBERON:0000468!7.02e-07!659;UBERON:0000466!7.34e-07!126;UBERON:0000481!8.74e-07!347;UBERON:0000475!9.24e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;5.28e-08;20!UBERON:0004921;2.05e-07;33!UBERON:0005631;3.04e-07;10!UBERON:0000158;3.04e-07;10!UBERON:0002619;5.76e-07;22!UBERON:0000478;6.29e-07;24 | |ontology_enrichment_uberon_v019=UBERON:0001950;5.28e-08;20!UBERON:0004921;2.05e-07;33!UBERON:0005631;3.04e-07;10!UBERON:0000158;3.04e-07;10!UBERON:0002619;5.76e-07;22!UBERON:0000478;6.29e-07;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.41e-14,114;UBERON:0011216,3.30e-13,223;UBERON:0004921,5.67e-12,118;UBERON:0005631,1.73e-11,14;UBERON:0000158,1.73e-11,14;UBERON:0004119,2.41e-10,160;UBERON:0000925,2.41e-10,160;UBERON:0006595,2.41e-10,160;UBERON:0001007,7.88e-10,145;UBERON:0001555,7.88e-10,145;UBERON:0007026,7.88e-10,145;UBERON:0003124,9.38e-09,7;UBERON:0000073,1.44e-08,53;UBERON:0002616,1.44e-08,53;UBERON:0008947,1.49e-08,38;UBERON:0003258,1.49e-08,38;UBERON:0001049,2.30e-08,56;UBERON:0005068,2.30e-08,56;UBERON:0006241,2.30e-08,56;UBERON:0007135,2.30e-08,56;UBERON:0001950,3.46e-08,20;UBERON:0002780,4.04e-08,41;UBERON:0001890,4.04e-08,41;UBERON:0003080,4.04e-08,41;UBERON:0006240,4.04e-08,41;UBERON:0001041,1.03e-07,87;UBERON:0002619,3.96e-07,22;UBERON:0000478,5.32e-07,24 | |||
|phase1_expression=0.908391896352783,0.214100523890983,0.281908808191942,0,0.446961094427288,0,0,0,0,3.68600904752263,3.48900583986214,5.24259293112413,2.90143676051299,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.152826811495903,0.0821005894499457,0.0787107813136792,0.786728553697808,0,0.464448369948228,0,0.30120591877825,0.739508020333575,0.0774672005803016,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0.619412741790207,0,0.256160706529101,0,0,0,0,0,0,0.224723484445085,0,0.962787081228281,0.639337125799041,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0,0,0,0.32145117339416,0,0,0,0,1.09227722252426,0,0.426730222566507,0.800791974072025,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0.260118695119756,0.164437904603676,0.552700035571697,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0.361439152384566,0,0.434539556882471,0,0.486634870302636,0,0,0,1.96468613246569,0.728590576585084,1.85392221392215,0,0.348259474598534,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,1.43723628363248,0,0,0,0,0,0,0.113432183160021,1.97328599257748,0.427114777637135,0,1.50045548042201,1.03052529238439,2.57640540045629,0.558350568994769,2.02531598689519,0.779496041289589,0,0,0,0.355009592516614,0.10075209822764,0,0.386521706326594,0,0.286804595389004,0.243947412259191,0.132529768321485,0.69716365721711,0.725627385107593,0,0,0,0.643240938192885,0,0,0,1.18306800039844,2.19160097101532,2.41011029883482,1.43382164552112,2.61455332910887,0.474541238222193,1.21348177344148,1.17732879075208,2.69323009862473,0,0,0.8231480226628,0,0,0,0,0,4.42758378755209,0,0.439001141634502,0,0.201057944823262,0.277765335475589,0,0,0,0.231860809950154,0,0,0,0,12.6432703673484,15.4527509177077,0,0.468008530278475,0.148631162288728,0,0,0.850650583454319,2.23896306757121,0.871901815541886,0,0,0.088048434013226,0.829312462163088,0.144119953416961,0.50496973370552,0,0.381988425558278,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0,0,0,2.10833939483032,1.19812427745791,0,0,0.144781306667579,0,0,0.224170287987055,0,0,0.513372145118994,0,0,0,0,0,0,2.99161459204025,0,0,0,0,1.24782516918484,0,0,0,0.902838299183157,0,0,0,0.184369168541703,0,0,0,0,0,0.106727557803444,17.8845267153293,3.32870879020994,2.72151263996712,2.97729369382532,3.52962538562544,0.280660094433074,0.384417447767103,0.511707249066704,2.0911009748669,1.48418066444991,0,0,0,0,0.116210378459959,4.3509401852984,0.601519410909855,4.23572549105123,0,0.364182336013434,0,4.96319574198153,1.30926073077505,1.56869953835371,1.46139224653261,0.527758144464379,0,0,0,0,0.270946437543853,1.00337954770971,0.509752546090077,4.15538004464362,0.447749509444357,0,0,0.512900250232778,0,0,19.4747512014195,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0.330569830721956,0.192190067365106,0.510450849978337,0.809262246844399,0,0,0,0,0,0,0,0,0.372158369359667,0,0.190630193923825,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,1.13008116620243,0,0.66343897524122,0.438450885253763,0,0,0.202910376962704,0.30982349809975,0,0,0,0.35667105148125,0,0.844430541190656,0.329294892959902,0,0,0.384888450902048,0.670302275535787,2.17781969722645,19.4877667607933,0.43050537267123,0,1.33029046061003,0.229723400206959,0,0,0,0.476463550915578,0,1.29694662238543,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,3.7428108081644,0.439524537815682,0.606802608747567,0.445773537109913,0,27.9331047143097,2.96964680832639,32.2518737204194,0.994147647766298,1.54736358051564,0,0,0,1.59398390600856,1.10513566212459,0,0.102268682502155,0,2.17727711363265,1.88723537409386,3.9384658428634,0,1.38100767891707,0,0,0.969332746095218,2.78304294485554,3.99227596002388,5.20855522170466,21.4276999990679,0.724999575434793,0.910347586283997,2.54253650292766,3.78220290828698,0,0,0,0.885741385813839,0.361789315876224,0,0.110579259931225,0.591095237907095,1.53569778007781,1.74301541630384,1.39423744278603,1.38510465306835,0,3.22789466143284,8.7064915077479,3.91130538919229,10.8460394308853,1.92354946143911,6.92945208824225,0,0,0.332423363800313,0.676786981851542,0.784250137270958,0.671286347903371,0,0,0.843992258112108,0.979396848954886,5.08871057162187,0,2.98578579323551,1.23840590304675,1.22206028986725,0,0,0,0.741412462787447,0,1.63985112007737,0,4.89161547330224,5.34116834975004,0.394584402849391,0,0.61214552326098,0.884612114798832,3.30711522711884,0.207376382794494,0,0.330991955875499,1.56966459203613,0,1.13843818411917,0.277349346026277,0.867798691675654,0.489961987071888,2.17648016451006,0.873633341210151,0.51595809741485,3.38647159511798,3.87373380556783,2.95615645391553,2.90967049465258,0,2.48578814858586,0,0,3.73533696139684,5.08433595110488,1.52301758477914,5.97668385270187,2.19790570540343,0.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| ||
|short_description=p2@RDH13 | |short_description=p2@RDH13 | ||
}} | }} |
Revision as of 14:26, 17 November 2012
Short description: | p2@RDH13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RDH13_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000396247, NM_138412, uc002qip.2_5end |
EntrezGene: | RDH13 |
HGNC: | 19978 |
UniProt: | B3KVA3Q8NBN7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.94e-08 | 253 |
extraembryonic cell | 5.49e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.41e-14 | 114 |
organ system subdivision | 3.30e-13 | 223 |
subdivision of digestive tract | 5.67e-12 | 118 |
extraembryonic membrane | 1.73e-11 | 14 |
membranous layer | 1.73e-11 | 14 |
endoderm-derived structure | 2.41e-10 | 160 |
endoderm | 2.41e-10 | 160 |
presumptive endoderm | 2.41e-10 | 160 |
digestive system | 7.88e-10 | 145 |
digestive tract | 7.88e-10 | 145 |
primitive gut | 7.88e-10 | 145 |
chorion | 9.38e-09 | 7 |
regional part of nervous system | 1.44e-08 | 53 |
regional part of brain | 1.44e-08 | 53 |
respiratory primordium | 1.49e-08 | 38 |
endoderm of foregut | 1.49e-08 | 38 |
neural tube | 2.30e-08 | 56 |
neural rod | 2.30e-08 | 56 |
future spinal cord | 2.30e-08 | 56 |
neural keel | 2.30e-08 | 56 |
neocortex | 3.46e-08 | 20 |
regional part of forebrain | 4.04e-08 | 41 |
forebrain | 4.04e-08 | 41 |
anterior neural tube | 4.04e-08 | 41 |
future forebrain | 4.04e-08 | 41 |
foregut | 1.03e-07 | 87 |
regional part of cerebral cortex | 3.96e-07 | 22 |
extraembryonic structure | 5.32e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.56e-21 | 106 |
cell type cancer | 5.92e-14 | 143 |
adenocarcinoma | 2.11e-07 | 25 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.