UBERON:0006554: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 18: | Line 18: | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001008 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:42, 27 June 2012
| Name: | urinary system structure | ||
|---|---|---|---|
| Xrefs: |
| ||
| Comments: | editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure) |
|---|---|
| part_of: | UBERON:0001008(renal system) |
Children
| is a: | UBERON:0000057 (urethra),UBERON:0000074 (renal glomerulus),UBERON:0000163 (embryonic cloaca),UBERON:0000365 (urothelium),UBERON:0001225 (cortex of kidney),UBERON:0001229 (renal corpuscle),UBERON:0001230 (glomerular capsule),UBERON:0001255 (urinary bladder),UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),UBERON:0001285 (nephron),UBERON:0001556 (lower urinary tract),UBERON:0002113 (kidney),UBERON:0002303 (juxtaglomerular apparatus),UBERON:0002319 (mesangium),UBERON:0002321 (extraglomerular mesangium),UBERON:0004819 (kidney epithelium),UBERON:0005215 (kidney interstitium),UBERON:0005749 (glomerular tuft),UBERON:0006555 (excretory tube),UBERON:0008987 (renal parenchyma),UBERON:0009846 (embryonic cloacal epithelium),UBERON:0011143 (upper urinary tract) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10290-104G2
- 10291-104G3
- 10318-105A3
- 10319-105A4 (Urethra, donor2)
- 10346-105D4
- 10347-105D5
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10290-104G2
- 10291-104G3
- 10318-105A3
- 10319-105A4 (Urethra, donor2)
- 10346-105D4
- 10347-105D5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006554 (urinary system structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.43e-62 | FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_a12c81a99ce4118b7a5f6e81a2224f15 | p6@Hoxd8 |
| 2.43e-62 | FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_a12c81a99ce4118b7a5f6e81a2224f15 | p6@Hoxd8 |
| 1.46e-57 | FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_d64cfe14798d1595d0f7eded6b632bd3 | p8@Hoxd8 |
| 1.46e-57 | FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_d64cfe14798d1595d0f7eded6b632bd3 | p8@Hoxd8 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_7fbc0798c3dc9e2d637ba11cbcdddbb3 | p@chr19:44824107..44824111, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_7fbc0798c3dc9e2d637ba11cbcdddbb3 | p@chr19:44824107..44824111, - |
| 4.88e-51 | FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_64db49eadda4cc5c03a23aa46d022eb5 | p5@Cldn8 |
| 4.88e-51 | FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_64db49eadda4cc5c03a23aa46d022eb5 | p5@Cldn8 |
| 1.53e-48 | FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_c602e73c4e777eda2f6fa8219c60cd41 | p@chr10:3291561..3291580, + |
| 1.53e-48 | FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_c602e73c4e777eda2f6fa8219c60cd41 | p@chr10:3291561..3291580, + |
| 4.49e-48 | FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_3f07d6f29a33f9fe995baae9a4a7113c | p@chr19:44899724..44899728, + |
| 4.49e-48 | FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_3f07d6f29a33f9fe995baae9a4a7113c | p@chr19:44821149..44821161, + |
| 4.49e-48 | FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_3f07d6f29a33f9fe995baae9a4a7113c | p@chr19:44899724..44899728, + |
| 4.49e-48 | FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_3f07d6f29a33f9fe995baae9a4a7113c | p@chr19:44821149..44821161, + |
| 3.63e-47 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_3cc1c34961c9d6314859e74253cc4276 | p4@PAX2 |
| 3.63e-47 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_3cc1c34961c9d6314859e74253cc4276 | p4@PAX2 |
| 3.57e-46 | FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_1333039880d639cb6658e733f5257694 | p@chr8:107148422..107148433, + |
| 3.57e-46 | FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_1333039880d639cb6658e733f5257694 | p@chr8:107148422..107148433, + |
| 1.85e-45 | FFCP PHASE1:Mm9::chr16:88563264..88563271,-#_c57ce8e1d58622dfe6a71533dc5d082c | p@chr16:88563264..88563271, - |
| 1.85e-45 | FFCP PHASE2:Mm9::chr16:88563264..88563271,-#_c57ce8e1d58622dfe6a71533dc5d082c | p@chr16:88563264..88563271, - |
| 5.85e-45 | FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_7a25ea7335878f48db5060ece0cc6233 | p5@Scp2 |
| 5.85e-45 | FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_7a25ea7335878f48db5060ece0cc6233 | p5@Scp2 |
| 6.9e-45 | FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_ee463976bccd5893882ee07c083f5b05 | p@chr10:50689167..50689171, + |
| 6.9e-45 | FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_ee463976bccd5893882ee07c083f5b05 | p@chr10:50689167..50689171, + |
| 8.37e-45 | FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_1607f143c87390884ab70d447c67d1c0 | p@chr5:24755801..24755819, + |
| 8.37e-45 | FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_1607f143c87390884ab70d447c67d1c0 | p@chr5:24755801..24755819, + |
| 1.02e-44 | FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_434aa9b7a17a47f0122f76800692a609 | p@chr19:59532611..59532623, + |
| 1.02e-44 | FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_434aa9b7a17a47f0122f76800692a609 | p@chr19:59532611..59532623, + |
| 8.96e-44 | FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_6337f0b88e0da16fcee57dfdf2a61265 | p1@ENSMUST00000154177 |
| 8.96e-44 | FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_6337f0b88e0da16fcee57dfdf2a61265 | p1@ENSMUST00000154177 |
| 9.94e-44 | FFCP PHASE2:Mm9::chr12:80169429..80169447,-#_9dba1c14cde225186be3ac67ffb5b826 | p@chr12:80169429..80169447, - |
| 9.94e-44 | FFCP PHASE1:Mm9::chr12:80169429..80169447,-#_9dba1c14cde225186be3ac67ffb5b826 | p@chr12:80169429..80169447, - |
| 2.31e-43 | FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p3@uc009jll.1 |
| 2.31e-43 | FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr2:74971765..74971779, - |
| 2.31e-43 | FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr10:50622895..50622905, + |
| 2.31e-43 | FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr19:17554168..17554181, + |
| 2.31e-43 | FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr7:47891824..47891827, - |
| 2.31e-43 | FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr19:17554168..17554181, + |
| 2.31e-43 | FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr8:118959620..118959632, - |
| 2.31e-43 | FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 2.31e-43 | FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr10:50622895..50622905, + |
| 2.31e-43 | FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p3@uc009jll.1 |
| 2.31e-43 | FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr10:79277411..79277429, + |
| 2.31e-43 | FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr7:47891824..47891827, - |
| 2.31e-43 | FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p2@Nphs1 |
| 2.31e-43 | FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 2.31e-43 | FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr10:79277411..79277429, + |
| 2.31e-43 | FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p2@Nphs1 |
| 2.31e-43 | FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr10:39251651..39251690, + |
| 2.31e-43 | FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr2:74971765..74971779, - |
| 2.31e-43 | FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p7@Steap2 |
| 2.31e-43 | FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr8:118959620..118959632, - |
| 2.31e-43 | FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p@chr10:39251651..39251690, + |
| 2.31e-43 | FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p7@Steap2 |
| 2.31e-43 | FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p4@Ros1 |
| 2.31e-43 | FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34a | p4@Ros1 |
| 1.27e-42 | FFCP PHASE2:Mm9::chr2:9809451..9809469,-#_6046711f12307f7b0d6fb7bb4f7c69ee | p6@Gata3 |
| 1.27e-42 | FFCP PHASE1:Mm9::chr2:9809451..9809469,-#_6046711f12307f7b0d6fb7bb4f7c69ee | p6@Gata3 |
| 1.46e-40 | FFCP PHASE2:Mm9::chr16:88563375..88563386,-#_9b6361a6acb85d9147d345a0d2bd906d | p4@Cldn8 |
| 1.46e-40 | FFCP PHASE1:Mm9::chr16:88563375..88563386,-#_9b6361a6acb85d9147d345a0d2bd906d | p4@Cldn8 |
| 2.85e-40 | FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_5357703b57c75a3fccfcd665a536a056 | p@chr11:75720190..75720216, - |
| 2.85e-40 | FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_5357703b57c75a3fccfcd665a536a056 | p@chr11:75720190..75720216, - |
| 2.87e-40 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_3dde910fa63c6387639f87c26b61ad9d | p7@HOXA10 |
| 2.87e-40 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_3dde910fa63c6387639f87c26b61ad9d | p7@HOXA10 |
| 3.14e-40 | FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_8d3ad166258755320681f94805c3d083 | p3@2810008M24Rik |
| 3.14e-40 | FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_8d3ad166258755320681f94805c3d083 | p3@2810008M24Rik |
| 3.79e-40 | FFCP PHASE1:Mm9::chr14:30665533..30665556,-#_302f9cc41fe56275c74f390c5738b58e | p@chr14:30665533..30665556, - |
| 3.79e-40 | FFCP PHASE2:Mm9::chr14:30665533..30665556,-#_302f9cc41fe56275c74f390c5738b58e | p@chr14:30665533..30665556, - |
| 6.1e-40 | FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_f69084a5122dff4c14633a568dcccf71 | p1@ENSMUST00000143898 |
| 6.1e-40 | FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_f69084a5122dff4c14633a568dcccf71 | p1@ENSMUST00000143898 |
| 3.85e-39 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_c5168f3ef6551e48f5b7630b50e696c5 | p3@PAX2 |
| 3.85e-39 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_c5168f3ef6551e48f5b7630b50e696c5 | p3@PAX2 |
| 3.98e-39 | FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_79ca84133a03102f14f8c2881cefc76a | p@chr3:154257229..154257241, - |
| 3.98e-39 | FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_79ca84133a03102f14f8c2881cefc76a | p4@Nphs1 |
| 3.98e-39 | FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_79ca84133a03102f14f8c2881cefc76a | p2@uc009jll.1 |
| 3.98e-39 | FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_79ca84133a03102f14f8c2881cefc76a | p@chr3:154257229..154257241, - |
| 3.98e-39 | FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_79ca84133a03102f14f8c2881cefc76a | p@chr10:12353875..12353921, - |
| 3.98e-39 | FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_79ca84133a03102f14f8c2881cefc76a | p2@uc009jll.1 |
| 3.98e-39 | FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_79ca84133a03102f14f8c2881cefc76a | p@chr10:12353875..12353921, - |
| 3.98e-39 | FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_79ca84133a03102f14f8c2881cefc76a | p4@Nphs1 |
| 4.87e-39 | FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_889281810f049b6c1f80150e364b0366 | p4@Pdzk1 |
| 4.87e-39 | FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_889281810f049b6c1f80150e364b0366 | p4@Pdzk1 |
| 5.41e-39 | FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_694b2f2dc7ffed9f94b7cda05cba0fe9 | p@chr10:3291584..3291599, + |
| 5.41e-39 | FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_694b2f2dc7ffed9f94b7cda05cba0fe9 | p@chr10:3291584..3291599, + |
| 6.27e-39 | FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_1566aa7f37a6cb02c1cd5abd0b37f789 | p8@Rgnef |
| 6.27e-39 | FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_1566aa7f37a6cb02c1cd5abd0b37f789 | p8@Rgnef |
| 8.15e-39 | FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_8d4b520358976d6cc336af2d5d263a63 | p9@Ppt2 |
| 8.15e-39 | FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_8d4b520358976d6cc336af2d5d263a63 | p9@Ppt2 |
| 1.13e-38 | FFCP PHASE1:Mm9::chr10:127286959..127286970,+#_d3a3ac132ed75aedb6cf9d3ae80c324b | p3@Rdh19 |
| 1.13e-38 | FFCP PHASE2:Mm9::chr12:94512176..94512186,-#_d3a3ac132ed75aedb6cf9d3ae80c324b | p@chr12:94512176..94512186, - |
| 1.13e-38 | FFCP PHASE2:Mm9::chr2:24289622..24289625,-#_d3a3ac132ed75aedb6cf9d3ae80c324b | p@chr2:24289622..24289625, - |
| 1.13e-38 | FFCP PHASE2:Mm9::chr14:71030002..71030013,-#_d3a3ac132ed75aedb6cf9d3ae80c324b | p14@Epb4.9 |
| 1.13e-38 | FFCP PHASE1:Mm9::chr2:74971811..74971824,-#_d3a3ac132ed75aedb6cf9d3ae80c324b | p@chr2:74971811..74971824, - |
| 1.13e-38 | FFCP PHASE2:Mm9::chr10:127286959..127286970,+#_d3a3ac132ed75aedb6cf9d3ae80c324b | p3@Rdh19 |
| 1.13e-38 | FFCP PHASE2:Mm9::chr2:124984656..124984673,+#_d3a3ac132ed75aedb6cf9d3ae80c324b | p@chr2:124984656..124984673, + |
| 1.13e-38 | FFCP PHASE2:Mm9::chr12:31949130..31949155,+#_d3a3ac132ed75aedb6cf9d3ae80c324b | p@chr12:31949130..31949155, + |
| 1.13e-38 | FFCP PHASE1:Mm9::chr2:24289622..24289625,-#_d3a3ac132ed75aedb6cf9d3ae80c324b | p@chr2:24289622..24289625, - |
| 1.13e-38 | FFCP PHASE1:Mm9::chr6:83708841..83708859,+#_d3a3ac132ed75aedb6cf9d3ae80c324b | p@chr6:83708841..83708859, + |
| 1.13e-38 | FFCP PHASE1:Mm9::chr12:94512176..94512186,-#_d3a3ac132ed75aedb6cf9d3ae80c324b | p@chr12:94512176..94512186, - |
| 1.13e-38 | FFCP PHASE1:Mm9::chr12:31949130..31949155,+#_d3a3ac132ed75aedb6cf9d3ae80c324b | p@chr12:31949130..31949155, + |
