UBERON:0001225: Difference between revisions
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|name=cortex of kidney | |name=cortex of kidney | ||
|namespace= | |namespace= | ||
|def="Region of parenchyma of kidney representing the outer portion.[FMA]" [FMA:FMA, Wikipedia: | |def="Region of parenchyma of kidney representing the outer portion.[FMA]" [FMA:FMA, Wikipedia:Renal_cortex] | ||
|xref=BTO:0001166;;EMAPA:17952;;FMA:15581;;GAID:424;;galen:CortexOfKidney;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg;;MA:0000372;;MESH:A.05.810.453.324;;ncithesaurus:Renal_Cortex;;SCTID:362211004 | |xref=BTO:0001166;;EHDAA:9332;;EMAPA:17952;;FMA:15581;;GAID:424;;galen:CortexOfKidney;;http://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg;;MA:0000372;;MESH:A.05.810.453.324;;ncithesaurus:Renal_Cortex;;SCTID:362211004 | ||
|is_a=UBERON:0001851;;UBERON: | |is_a=UBERON:0001851;;UBERON:0006554 | ||
|synonym="cortex renalis" EXACT [FMA:15581, FMA:TA];;"kidney cortex" EXACT [];;"renal cortex" EXACT [] | |synonym="cortex renalis" EXACT [FMA:15581, FMA:TA];;"kidney cortex" EXACT [];;"renal cortex" EXACT [] | ||
|comment= | |comment= | ||
|alt_id=UBERON:FMA_15581-MA_0000372 | |alt_id=UBERON:FMA_15581-MA_0000372 | ||
|disjoint_from= | |disjoint_from= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:58, 26 June 2012
| Name: | cortex of kidney | ||
|---|---|---|---|
| Definition: | "Region of parenchyma of kidney representing the outer portion.[FMA]" [FMA:FMA, Wikipedia:Renal_cortex] | ||
| Xrefs: |
| ||
| Synonyms: |
"cortex renalis" EXACT [FMA:15581, FMA:TA] "kidney cortex" EXACT [] "renal cortex" EXACT [] | ||
| Alt_id: | UBERON:FMA_15581-MA_0000372 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001851(cortex),UBERON:0006554(urinary system structure) |
|---|
Children
| part of: | UBERON:0001229 (renal corpuscle),UBERON:0002303 (juxtaglomerular apparatus),CL:0002584 (renal cortical epithelial cell),CL:0002681 (kidney cortical cell),UBERON:0004134 (proximal tubule),UBERON:0006853 (renal cortex tubule) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11675-122H1 (Renal Glomerular Endothelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001225 (cortex of kidney), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.8e-58 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_0967317cb6a503867b7f0742e3b3cd25 | p@chr2:693380..693398, + |
| 4.8e-58 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_0967317cb6a503867b7f0742e3b3cd25 | p@chr2:693380..693398, + |
| 4.05e-52 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_37d53089d0525b985215db698c98d9ea | p7@HOXA10 |
| 4.05e-52 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_37d53089d0525b985215db698c98d9ea | p7@HOXA10 |
| 1.06e-50 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_83ec7f176c165414260e3c655c45212f | p@chr5:74244100..74244117, + |
| 1.06e-50 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_83ec7f176c165414260e3c655c45212f | p@chr5:74244100..74244117, + |
| 5.59e-50 | FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_3c8f12c02fc5da3b2d2cab2418b20ee1 | p2@PLA2G2F |
| 5.59e-50 | FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_3c8f12c02fc5da3b2d2cab2418b20ee1 | p2@PLA2G2F |
| 6.11e-42 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_450531ab2a03d7a9da85ee1734957711 | p@chr16:86768403..86768437, + |
| 6.11e-42 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_450531ab2a03d7a9da85ee1734957711 | p@chr16:86768403..86768437, + |
| 3.58e-41 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_54daa4e9cae63e75975bced026031b7a | p4@MEGF11 |
| 3.58e-41 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_54daa4e9cae63e75975bced026031b7a | p4@MEGF11 |
| 1.0e-40 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_cf437614184f3d480cbc895a630ae9c4 | p1@ENST00000413103 |
| 1.0e-40 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_cf437614184f3d480cbc895a630ae9c4 | p1@ENST00000413103 |
| 6.83e-40 | FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_fc653487c83d5f0da66470a6aec917cb | p@chr7:140227303..140227330, - |
| 6.83e-40 | FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_fc653487c83d5f0da66470a6aec917cb | p@chr7:140227303..140227330, - |
| 9.22e-40 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_59119e9118a264f6781bf94d4e3fd089 | p3@PAX2 |
| 9.22e-40 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_59119e9118a264f6781bf94d4e3fd089 | p3@PAX2 |
| 1.79e-39 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_bc3dcb12e0dd3f803e2b71d87c1d46c9 | p@chr18:3456189..3456200, + |
| 1.79e-39 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_bc3dcb12e0dd3f803e2b71d87c1d46c9 | p@chr18:3456189..3456200, + |
| 4.5e-38 | FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_815db6f8381bbd0044a52dba429c7499 | p11@VARS2 |
| 4.5e-38 | FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_815db6f8381bbd0044a52dba429c7499 | p11@VARS2 |
| 8.61e-38 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_03b8556bb1df2d0f38d853f01584d8ed | p@chr2:120409486..120409492, + |
| 8.61e-38 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_03b8556bb1df2d0f38d853f01584d8ed | p@chr2:120409486..120409492, + |
| 5.07e-37 | FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_2302cf15710ad44b749ff4f0c0492a29 | p2@AB527789 |
| 5.07e-37 | FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_2302cf15710ad44b749ff4f0c0492a29 | p2@AB527789 |
| 6.37e-37 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_f4e3aaa55d630e72b39c2bac76324407 | p@chr1:1100457..1100470, + |
| 6.37e-37 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_f4e3aaa55d630e72b39c2bac76324407 | p@chr1:1100457..1100470, + |
| 1.63e-36 | FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_0aafef9e374046a2db1b29ee44acb7dd | p6@LRRN4 |
| 1.63e-36 | FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_0aafef9e374046a2db1b29ee44acb7dd | p6@LRRN4 |
| 2.81e-35 | FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_7afb899ea70129746ae1c560c9e6dfaf | p3@HNF1B |
| 2.81e-35 | FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_7afb899ea70129746ae1c560c9e6dfaf | p3@HNF1B |
| 4.37e-35 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_92ae2b9432bd4e95434f527464b58d7b | p4@AIF1L |
| 4.37e-35 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_92ae2b9432bd4e95434f527464b58d7b | p4@AIF1L |
| 1.19e-34 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_c2344b65c8804ecf6af85b235c61c037 | p4@PAX2 |
| 1.19e-34 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_c2344b65c8804ecf6af85b235c61c037 | p4@PAX2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_a79e182cb214989ca33ec19c5a058737 | p10@WWC1 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_a79e182cb214989ca33ec19c5a058737 | p10@WWC1 |
| 2.93e-33 | FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_62cbfca880d692439662c6245cdd6027 | p2@LRRN4 |
| 2.93e-33 | FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_62cbfca880d692439662c6245cdd6027 | p2@LRRN4 |
| 1.44e-32 | FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_68ae6c0dc687091d381d09c8a61295e1 | p2@CLDN6 |
| 1.44e-32 | FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_68ae6c0dc687091d381d09c8a61295e1 | p2@CLDN6 |
| 1.85e-32 | FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_8b47c58f7a8c794786c40acbe8e314f8 | p5@LRRN4 |
| 1.85e-32 | FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_8b47c58f7a8c794786c40acbe8e314f8 | p5@LRRN4 |
| 4.69e-32 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_bbe992bdfa5cb1d5bcaeec8d5619f227 | p@chr7:140227349..140227360, - |
| 4.69e-32 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_bbe992bdfa5cb1d5bcaeec8d5619f227 | p@chr7:140227349..140227360, - |
| 1.23e-31 | FFCP PHASE2:Hg19::chr17:27970385..27970397,-#_5a3dab118f8da97071ec76d1de68034c | p@chr17:27970385..27970397, - |
| 1.23e-31 | FFCP PHASE1:Hg19::chr17:27970385..27970397,-#_5a3dab118f8da97071ec76d1de68034c | p@chr17:27970385..27970397, - |
| 2.99e-30 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_f676cc28701d7692d7018452b293bae5 | p@chr15:85403302..85403304, + |
| 2.99e-30 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_f676cc28701d7692d7018452b293bae5 | p@chr15:85403302..85403304, + |
| 3.02e-30 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_e715f54d5e4f070ed601f10a08fba736 | p2@B3GALT5 |
| 3.02e-30 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_e715f54d5e4f070ed601f10a08fba736 | p2@B3GALT5 |
| 1.06e-29 | FFCP PHASE1:Hg19::chr19:50390837..50390847,+#_5389d4bd0bad4acead00936c441ac473 | p@chr19:50390837..50390847, + |
| 1.06e-29 | FFCP PHASE2:Hg19::chr19:50390837..50390847,+#_5389d4bd0bad4acead00936c441ac473 | p@chr19:50390837..50390847, + |
| 1.26e-29 | FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_a93ed5664ba19f93bb4c819bdf493770 | p3@LRRN4 |
| 1.26e-29 | FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_a93ed5664ba19f93bb4c819bdf493770 | p3@LRRN4 |
| 1.54e-29 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_f8b6113e91b7fdc6d69eaac5b3ea9093 | p@chr17:171147..171161, + |
| 1.54e-29 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_f8b6113e91b7fdc6d69eaac5b3ea9093 | p@chr17:171147..171161, + |
| 3.11e-29 | FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_2a4e82c025b8103ac5ee6c4df7f1ffaa | p@chr21:46826248..46826282, - |
| 3.11e-29 | FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_2a4e82c025b8103ac5ee6c4df7f1ffaa | p@chr21:46826248..46826282, - |
| 4.34e-29 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_9c158e5287508874e5ce97a038265e0d | p1@ENST00000418041, p1@ENST00000443104 |
| 4.34e-29 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_9c158e5287508874e5ce97a038265e0d | p1@ENST00000418041, p1@ENST00000443104 |
| 1.58e-28 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_b7118521aa8fa70a05b6cadfbad9211a | p3@AIF1L |
| 1.58e-28 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_b7118521aa8fa70a05b6cadfbad9211a | p3@AIF1L |
| 2.94e-28 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_dc797c2c0a2995eab95a8d753e0408b0 | p@chr7:7606139..7606151, - |
| 2.94e-28 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_dc797c2c0a2995eab95a8d753e0408b0 | p@chr7:7606139..7606151, - |
| 6.08e-28 | FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_c7970272d14b3fbf84ca692631920fe2 | p1@ENST00000444849 |
| 6.08e-28 | FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_c7970272d14b3fbf84ca692631920fe2 | p1@ENST00000444849 |
| 1.11e-27 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_2d7da238e689edca371ce1daff006cbb | p2@PAX2 |
| 1.11e-27 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_2d7da238e689edca371ce1daff006cbb | p2@PAX2 |
| 2.09e-27 | FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_f8408004d532c1e2ed9c592baf800bb8 | p16@TJP2 |
| 2.09e-27 | FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_f8408004d532c1e2ed9c592baf800bb8 | p16@TJP2 |
| 2.35e-27 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_ad4f68a2b8f3541515272af9ce3e2d48 | p@chr16:86604624..86604648, + |
| 2.35e-27 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_ad4f68a2b8f3541515272af9ce3e2d48 | p@chr16:86604624..86604648, + |
| 3.45e-27 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_723ed9900f2a15bf48c59a64b55d277e | p7@LRRN4 |
| 3.45e-27 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_723ed9900f2a15bf48c59a64b55d277e | p7@LRRN4 |
| 7.25e-27 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_c3a1fcd2396b0e73cfb23b2fba6540d3 | p@chr17:171082..171101, + |
| 7.25e-27 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_c3a1fcd2396b0e73cfb23b2fba6540d3 | p@chr17:171082..171101, + |
| 4.96e-26 | FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_0dc7dd3763c80730e68a1187bd9582a1 | p1@AB527789 |
| 4.96e-26 | FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_0dc7dd3763c80730e68a1187bd9582a1 | p1@AB527789 |
| 7.1e-26 | FFCP PHASE2:Hg19::chr2:108994633..108994650,+#_842780027a6ffe6f7d269816d9ae25cc | p4@SULT1C4 |
| 7.1e-26 | FFCP PHASE1:Hg19::chr2:108994633..108994650,+#_842780027a6ffe6f7d269816d9ae25cc | p4@SULT1C4 |
| 9.68e-25 | FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_f05139bc33c2f00de7b0ff37f9aa38e6 | p4@DCDC2 |
| 9.68e-25 | FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_f05139bc33c2f00de7b0ff37f9aa38e6 | p4@DCDC2 |
| 1.6e-24 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_70a65b9284a20e04484d67a2ca633fd7 | p16@HOXA10 |
| 1.6e-24 | FFCP PHASE1:Hg19::chr2:177053683..177053697,-#_70a65b9284a20e04484d67a2ca633fd7 | p1@LOC401022 |
| 1.6e-24 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_70a65b9284a20e04484d67a2ca633fd7 | p16@HOXA10 |
| 1.6e-24 | FFCP PHASE2:Hg19::chr2:177053683..177053697,-#_70a65b9284a20e04484d67a2ca633fd7 | p1@LOC401022 |
| 1.66e-24 | FFCP PHASE1:Hg19::chr22:37823036..37823049,-#_5c010e831631c1c09de1e32ab51b8cb2 | p1@ENST00000451509 |
| 1.66e-24 | FFCP PHASE2:Hg19::chr22:37823036..37823049,-#_5c010e831631c1c09de1e32ab51b8cb2 | p1@ENST00000451509 |
| 1.87e-24 | FFCP PHASE2:Hg19::chr17:46675539..46675551,-#_f0d1c43dac4d0bc7b8d40d9866a7ee86 | p7@HOXB6 |
| 1.87e-24 | FFCP PHASE1:Hg19::chr17:46675539..46675551,-#_f0d1c43dac4d0bc7b8d40d9866a7ee86 | p7@HOXB6 |
| 2.63e-24 | FFCP PHASE2:Hg19::chr13:26619917..26619921,-#_5a70ec12e320952b7a183f89d96362f0 | p@chr13:26619917..26619921, - |
| 2.63e-24 | FFCP PHASE1:Hg19::chr13:26619917..26619921,-#_5a70ec12e320952b7a183f89d96362f0 | p@chr13:26619917..26619921, - |
| 2.91e-24 | FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_ef50475e76b81b4c1de0c1b8c37c52f0 | p1@HOXD4 |
| 2.91e-24 | FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_ef50475e76b81b4c1de0c1b8c37c52f0 | p1@HOXD4 |
| 2.98e-24 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_eee2c3d507756e26346e903950efbc67 | p@chr7:98453821..98453843, - |
| 2.98e-24 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_eee2c3d507756e26346e903950efbc67 | p@chr7:98453821..98453843, - |
| 3.49e-24 | FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_d183f62348f257d353ae62f498999663 | p18@SCNN1A |
| 3.49e-24 | FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_d183f62348f257d353ae62f498999663 | p18@SCNN1A |
