FFCP PHASE1:Mm9::chr6:72471687..72471701,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=71130 | |EntrezGene=71130 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=331 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-59bp_to_ENSMUST00000160761_5end | |association_with_transcript=-59bp_to_ENSMUST00000160761_5end | ||
|cluster_id=chr6:72471687..72471701,- | |||
|description=CAGE_peak_1_at_Sh2d6_5end | |description=CAGE_peak_1_at_Sh2d6_5end | ||
|id=chr6:72471687..72471701,- | |id=chr6:72471687..72471701,- | ||
|ontology_enrichment_celltype=CL:0002563!1.09e-09!9;CL:0002251!1.09e-09!9;CL:0000473!3.86e-08!3;CL:0000627!3.86e-08!3;CL:0002250!3.86e-08!3;CL:0000682!3.86e-08!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002250,1.67e-14,3;CL:0000682,1.67e-14,3;CL:0002563,2.68e-13,9;CL:0002251,2.68e-13,9;CL:0000066,3.43e-11,25;CL:0002076,6.58e-08,15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!1.33e-17!59;UBERON:0000344!2.89e-15!15;UBERON:0001007!5.88e-15!128;UBERON:0001555!5.88e-15!128;UBERON:0007026!5.88e-15!128;UBERON:0004119!1.31e-14!130;UBERON:0000925!1.31e-14!130;UBERON:0006595!1.31e-14!130;UBERON:0000160!5.76e-14!43;UBERON:0004921!8.84e-13!126;UBERON:0004185!8.84e-13!126;UBERON:0001242!2.93e-11!13;UBERON:0000060!2.93e-11!13;UBERON:0001262!2.93e-11!13;UBERON:0004786!2.93e-11!13;UBERON:0003350!1.09e-09!9;UBERON:0004808!1.09e-09!9;UBERON:0001277!1.09e-09!9;UBERON:0004923!1.02e-08!24;UBERON:0000485!8.94e-08!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,7.25e-20,15;UBERON:0005409,2.13e-17,47;UBERON:0000160,8.86e-17,31;UBERON:0003350,2.68e-13,9;UBERON:0004808,2.68e-13,9;UBERON:0001277,2.68e-13,9;UBERON:0001242,5.11e-13,13;UBERON:0001262,5.11e-13,13;UBERON:0004786,5.11e-13,13;UBERON:0004923,4.81e-12,24;UBERON:0001962,5.96e-11,2;UBERON:0001961,5.96e-11,2;UBERON:0001744,5.96e-11,2;UBERON:0000485,7.47e-11,11;UBERON:0001007,5.28e-08,116;UBERON:0001555,5.28e-08,116;UBERON:0007026,5.28e-08,116;UBERON:0004119,7.99e-08,118;UBERON:0000925,7.99e-08,118;UBERON:0006595,7.99e-08,118;UBERON:0002465,1.42e-07,3 | |||
|phase1_expression=0,0,0.909998478779072,0,0,36.597681276792,49.9931050874425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7993938234725,11.6998733344257,1.72269589234506,3.4460959692726,3.66301095566011,0,0,0.443461021310609,0,0,0,4.04392267651784,2.49351968037739,1.83752420636132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.38642638021478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.5559137533843,1.05780226665418,0,0,0,0.201683524623343,0.22237804384487,0,2.84717436926707,0,0,0.198956472041151,0.19496408711912,0,0.864552199498777,3.18626037206988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45740418314925,0,0,0,0,0,0,0,0,0,0,6.68269432610579,0,0,0.108005340821801,0,0.218362563746178,0,0.0826534557253359,1.83229159388821,1.03691978633434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25984164595559,0,0,0,0,0.100966449948148,0.0762068066549998,0.201652370273681,0.0974578807397524,0.384847366561318,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.909998478779072,0,0,36.597681276792,49.9931050874425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7993938234725,11.6998733344257,1.72269589234506,3.4460959692726,3.66301095566011,0,0,0.443461021310609,0,0,0,4.04392267651784,2.49351968037739,1.83752420636132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.38642638021478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.5559137533843,1.05780226665418,0,0,0,0.201683524623343,0.22237804384487,0,2.84717436926707,0,0,0.198956472041151,0.19496408711912,0,0.864552199498777,3.18626037206988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45740418314925,0,0,0,0,0,0,0,0,0,0,6.68269432610579,0,0,0.108005340821801,0,0.218362563746178,0,0.0826534557253359,1.83229159388821,1.03691978633434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25984164595559,0,0,0,0,0.100966449948148,0.0762068066549998,0.201652370273681,0.0974578807397524,0.384847366561318,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@Sh2d6 | |short_description=p1@Sh2d6 | ||
}} | }} |
Latest revision as of 17:35, 1 October 2015
Short description: | p1@Sh2d6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sh2d6_5end |
Coexpression cluster: | MCL_coexpression_mm9:331 |
Association with transcript: | -59bp_to_ENSMUST00000160761_5end |
EntrezGene: | Sh2d6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal crypt stem cell | 1.67e-14 | 3 |
M cell of gut | 1.67e-14 | 3 |
intestinal epithelial cell | 2.68e-13 | 9 |
epithelial cell of alimentary canal | 2.68e-13 | 9 |
epithelial cell | 3.43e-11 | 25 |
endo-epithelial cell | 6.58e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 7.25e-20 | 15 |
gastrointestinal system | 2.13e-17 | 47 |
intestine | 8.86e-17 | 31 |
epithelium of mucosa | 2.68e-13 | 9 |
gastrointestinal system epithelium | 2.68e-13 | 9 |
intestinal epithelium | 2.68e-13 | 9 |
intestinal mucosa | 5.11e-13 | 13 |
wall of intestine | 5.11e-13 | 13 |
gastrointestinal system mucosa | 5.11e-13 | 13 |
organ component layer | 4.81e-12 | 24 |
gut-associated lymphoid tissue | 5.96e-11 | 2 |
mucosa-associated lymphoid tissue | 5.96e-11 | 2 |
lymphoid tissue | 5.96e-11 | 2 |
simple columnar epithelium | 7.47e-11 | 11 |
digestive system | 5.28e-08 | 116 |
digestive tract | 5.28e-08 | 116 |
primitive gut | 5.28e-08 | 116 |
endoderm-derived structure | 7.99e-08 | 118 |
endoderm | 7.99e-08 | 118 |
presumptive endoderm | 7.99e-08 | 118 |
lymphoid system | 1.42e-07 | 3 |