FFCP PHASE1:Mm9::chr11:6130130..6130163,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=237636 | |EntrezGene=237636 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=Q6T3U4 | |UniProt=Q6T3U4 | ||
|association_with_transcript=0bp_to_ENSMUST00000004505_5end | |association_with_transcript=0bp_to_ENSMUST00000004505_5end | ||
|cluster_id=chr11:6130130..6130163,- | |||
|description=CAGE_peak_2_at_Npc1l1_5end | |description=CAGE_peak_2_at_Npc1l1_5end | ||
|id=chr11:6130130..6130163,- | |id=chr11:6130130..6130163,- | ||
|ontology_enrichment_celltype=CL:0002563!2.56e-10!9;CL:0002251!2.56e-10!9;CL:0000239!2.87e-08!6;CL:0000677!2.87e-08!6;CL:0000212!2.87e-08!6;CL:0000584!2.87e-08!6;CL:0000075!6.58e-07!7 | |ontology_enrichment_celltype=CL:0002563!2.56e-10!9;CL:0002251!2.56e-10!9;CL:0000239!2.87e-08!6;CL:0000677!2.87e-08!6;CL:0000212!2.87e-08!6;CL:0000584!2.87e-08!6;CL:0000075!6.58e-07!7 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.91e-11,9;CL:0002251,2.91e-11,9;CL:0000239,5.40e-09,6;CL:0000677,5.40e-09,6;CL:0000584,5.40e-09,6;CL:0000075,1.51e-07,7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.35e-23!43;UBERON:0005409!1.76e-22!59;UBERON:0000344!1.54e-17!15;UBERON:0001242!2.60e-15!13;UBERON:0000060!2.60e-15!13;UBERON:0001262!2.60e-15!13;UBERON:0004786!2.60e-15!13;UBERON:0004923!1.76e-11!24;UBERON:0003350!2.56e-10!9;UBERON:0004808!2.56e-10!9;UBERON:0001277!2.56e-10!9;UBERON:0000485!5.01e-08!11 | |ontology_enrichment_uberon=UBERON:0000160!2.35e-23!43;UBERON:0005409!1.76e-22!59;UBERON:0000344!1.54e-17!15;UBERON:0001242!2.60e-15!13;UBERON:0000060!2.60e-15!13;UBERON:0001262!2.60e-15!13;UBERON:0004786!2.60e-15!13;UBERON:0004923!1.76e-11!24;UBERON:0003350!2.56e-10!9;UBERON:0004808!2.56e-10!9;UBERON:0001277!2.56e-10!9;UBERON:0000485!5.01e-08!11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.51e-35,31;UBERON:0005409,3.47e-28,47;UBERON:0000344,2.90e-19,15;UBERON:0001242,8.52e-17,13;UBERON:0001262,8.52e-17,13;UBERON:0004786,8.52e-17,13;UBERON:0003350,2.91e-11,9;UBERON:0004808,2.91e-11,9;UBERON:0001277,2.91e-11,9;UBERON:0004923,2.33e-10,24;UBERON:0000485,7.93e-09,11;UBERON:0002108,5.28e-07,4;UBERON:0001007,7.03e-07,116;UBERON:0001555,7.03e-07,116;UBERON:0007026,7.03e-07,116 | |||
|phase1_expression=0,53.7422127764616,57.3299041630815,58.9805212048319,62.1110705133471,12.7588246653036,12.1478573109673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,41.9180147718725,50.4700418347774,49.9581808780068,40.060865642794,43.5251890025496,76.9594848798314,86.6983646374162,44.7895631523715,0,0,0,1.1554064790051,4.15586613396231,2.04169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.21333260395256,0,0,0,0,0,0,0,0,0,0,15.186456002635,0,0,0,0,0,0,0,0.376999773989026,0.494389935468748,0,0,0,0,0,7.45567044872489,0,0,116.488417175118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,297.376904685418,78.5418182990726,0,0,2.44848176511977,18.9582513145942,35.3581089713344,53.072949685404,106.294509785971,55.6682466967157,57.0530923976612,58.6921592521395,72.5266404083127,121.34062016832,95.5330180446148,71.4917170983178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604647113929502,0,0,0,9.8202751403924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,83.0720384395075,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,3.24016022465404,1.25452977608681,4.58561383866973,2.02296519577231,1.73572257023205,0.785267825952089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,1.55572709461131,2.47242068686673,4.1719497246936,2.27427490587418,3.54871019846336,1.88626341386076,2.90288673156635,2.36893063898016,2.52716063404698,1.42888107384922,2.0859178670074,2.50781986602817,1.64834360321323,1.61918812147837,0.685738504770831,2.66213709239006,1.90748951957857,3.48831399917588,2.07040636913727,2.876896668317,2.19513567447327,4.20911538300549,2.30866993537965,2.24456908663095,1.66089025373844,2.1670986122624,0.818462086339379,2.01417893541756,2.12197272079256,0,3.04111090979031,3.22306581072447,0,0,0 | |phase1_expression=0,53.7422127764616,57.3299041630815,58.9805212048319,62.1110705133471,12.7588246653036,12.1478573109673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,41.9180147718725,50.4700418347774,49.9581808780068,40.060865642794,43.5251890025496,76.9594848798314,86.6983646374162,44.7895631523715,0,0,0,1.1554064790051,4.15586613396231,2.04169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.21333260395256,0,0,0,0,0,0,0,0,0,0,15.186456002635,0,0,0,0,0,0,0,0.376999773989026,0.494389935468748,0,0,0,0,0,7.45567044872489,0,0,116.488417175118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,297.376904685418,78.5418182990726,0,0,2.44848176511977,18.9582513145942,35.3581089713344,53.072949685404,106.294509785971,55.6682466967157,57.0530923976612,58.6921592521395,72.5266404083127,121.34062016832,95.5330180446148,71.4917170983178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604647113929502,0,0,0,9.8202751403924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,83.0720384395075,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,3.24016022465404,1.25452977608681,4.58561383866973,2.02296519577231,1.73572257023205,0.785267825952089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,1.55572709461131,2.47242068686673,4.1719497246936,2.27427490587418,3.54871019846336,1.88626341386076,2.90288673156635,2.36893063898016,2.52716063404698,1.42888107384922,2.0859178670074,2.50781986602817,1.64834360321323,1.61918812147837,0.685738504770831,2.66213709239006,1.90748951957857,3.48831399917588,2.07040636913727,2.876896668317,2.19513567447327,4.20911538300549,2.30866993537965,2.24456908663095,1.66089025373844,2.1670986122624,0.818462086339379,2.01417893541756,2.12197272079256,0,3.04111090979031,3.22306581072447,0,0,0 | ||
|short_description=p2@Npc1l1 | |short_description=p2@Npc1l1 | ||
}} | }} |
Latest revision as of 20:33, 1 October 2015
Short description: | p2@Npc1l1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Npc1l1_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 0bp_to_ENSMUST00000004505_5end |
EntrezGene: | Npc1l1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.91e-11 | 9 |
epithelial cell of alimentary canal | 2.91e-11 | 9 |
brush border epithelial cell | 5.40e-09 | 6 |
gut absorptive cell | 5.40e-09 | 6 |
enterocyte | 5.40e-09 | 6 |
columnar/cuboidal epithelial cell | 1.51e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.51e-35 | 31 |
gastrointestinal system | 3.47e-28 | 47 |
mucosa | 2.90e-19 | 15 |
intestinal mucosa | 8.52e-17 | 13 |
wall of intestine | 8.52e-17 | 13 |
gastrointestinal system mucosa | 8.52e-17 | 13 |
epithelium of mucosa | 2.91e-11 | 9 |
gastrointestinal system epithelium | 2.91e-11 | 9 |
intestinal epithelium | 2.91e-11 | 9 |
organ component layer | 2.33e-10 | 24 |
simple columnar epithelium | 7.93e-09 | 11 |
small intestine | 5.28e-07 | 4 |
digestive system | 7.03e-07 | 116 |
digestive tract | 7.03e-07 | 116 |
primitive gut | 7.03e-07 | 116 |