FFCP PHASE1:Mm9::chr4:130372754..130372768,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20970 | |EntrezGene=20970 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=38 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000140623_5end | |association_with_transcript=0bp_to_ENSMUST00000140623_5end | ||
|cluster_id=chr4:130372754..130372768,+ | |||
|description=CAGE_peak_7_at_Sdc3_5end | |description=CAGE_peak_7_at_Sdc3_5end | ||
|id=chr4:130372754..130372768,+ | |id=chr4:130372754..130372768,+ | ||
|ontology_enrichment_celltype=CL:0000393!1.92e-14!39;CL:0000211!1.92e-14!39;CL:0000055!6.59e-14!50;CL:0000540!8.78e-14!33;CL:0000047!8.78e-14!33;CL:0000031!8.78e-14!33;CL:0000404!8.78e-14!33;CL:0002319!1.01e-13!43;CL:0000117!1.96e-13!23;CL:0000337!1.96e-13!23;CL:0000221!5.04e-13!44;CL:0000133!5.04e-13!44;CL:0002321!7.00e-07!70;CL:0000220!7.00e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.12e-26,23;CL:0000337,1.12e-26,23;CL:0000393,5.06e-21,39;CL:0000211,5.06e-21,39;CL:0000540,5.07e-20,33;CL:0000047,5.07e-20,33;CL:0000031,5.07e-20,33;CL:0000404,5.07e-20,33;CL:0002319,6.94e-19,43;CL:0000221,2.32e-18,44;CL:0000133,2.32e-18,44;CL:0000723,1.13e-15,91;CL:0000048,1.13e-15,91;CL:0000034,2.31e-14,97;CL:0002321,9.15e-13,70;CL:0002194,1.30e-12,4;CL:0000766,1.30e-12,4;CL:0000234,1.30e-12,4;CL:0000576,1.30e-12,4;CL:0000235,1.30e-12,4;CL:0000864,1.30e-12,4;CL:0002009,1.30e-12,4;CL:0000040,1.30e-12,4;CL:0000559,1.30e-12,4;CL:0002092,3.89e-10,3;CL:0002540,3.89e-10,3;CL:0002613,8.11e-09,3;CL:0000120,9.76e-09,3;CL:0002610,3.69e-08,3;CL:0002476,3.22e-07,2;CL:0000473,3.47e-07,7;CL:0000557,3.47e-07,7;CL:0000878,5.14e-07,2;CL:0000129,5.14e-07,2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.88e-15!75;UBERON:0001016!9.88e-15!75;UBERON:0001017!1.96e-14!73;UBERON:0005743!1.96e-14!73;UBERON:0004121!1.36e-12!102;UBERON:0000924!1.36e-12!102;UBERON:0006601!1.36e-12!102;UBERON:0002346!5.85e-11!71;UBERON:0003075!5.85e-11!71;UBERON:0007284!5.85e-11!71;UBERON:0002020!2.65e-10!34;UBERON:0001049!2.02e-08!52;UBERON:0005068!2.02e-08!52;UBERON:0006241!2.02e-08!52;UBERON:0007135!2.02e-08!52;UBERON:0002791!1.87e-07!29;UBERON:0003528!1.87e-07!29;UBERON:0001893!1.87e-07!29;UBERON:0000955!3.51e-07!50;UBERON:0006238!3.51e-07!50;UBERON:0002616!5.56e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.46e-15,73;UBERON:0001016,1.86e-14,75;UBERON:0002020,4.92e-11,34;UBERON:0000073,7.96e-11,54;UBERON:0004121,2.26e-10,95;UBERON:0000924,2.26e-10,95;UBERON:0006601,2.26e-10,95;UBERON:0001948,1.50e-09,5;UBERON:0002315,1.50e-09,5;UBERON:0002371,1.29e-08,16;UBERON:0004684,3.69e-08,3;UBERON:0002275,3.69e-08,3;UBERON:0002420,3.90e-08,8;UBERON:0007245,3.90e-08,8;UBERON:0010009,3.90e-08,8;UBERON:0010011,3.90e-08,8;UBERON:0000454,3.90e-08,8;UBERON:0002240,5.89e-08,6;UBERON:0005174,5.89e-08,6;UBERON:0001137,5.89e-08,6;UBERON:0001049,2.00e-07,52;UBERON:0005068,2.00e-07,52;UBERON:0006241,2.00e-07,52;UBERON:0007135,2.00e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0.137114433605739,0,0.425216450755349,0,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0.436050312760893,0,0.194429899074283,0.55994568650145,0,0,0,0,2.05807548828758,0.85960031981627,2.06268836910977,1.01158230429799,3.70293685490423,2.53532561402472,0,0,6.29929802096979,22.7439263390404,9.9467216092454,5.09320187881288,4.2264013585371,0.622137673850866,1.21505344498522,0.630974884054146,1.99955689082663,3.09215957332259,0.489963196859816,0.766763768145891,0,1.10115880999389,1.53224805702225,1.0752457327937,1.31886287730194,3.11057988248193,1.56274011167028,1.3959149950069,0.56276261003168,1.06958773443767,6.18720029494702,3.27454865837937,0.559198337475902,0.37863096666592,0.151143120213571,0.289864488701678,0,0,0,0,0,0.702222100658759,0.340860645156116,0.259786004602869,0.35333957451034,0,0,0,0,0.865964164044856,0.253359865475099,0,0,1.03575153458869,0.593768556259299,0,0.608930956624282,0.230615497256059,0.301445281105245,0.823120949949934,0.376999773989026,0,0.578397427679647,0,0.485300549842228,0.441683036920787,0,0,0.585561594023094,0.209446706813455,0,0,0,0,0.449371918214468,0,0.376963056338593,0.347648640384553,0.511430914660661,1.24672826735736,0,0.305518091550949,0.124406970610093,0.252722758433675,0.210441855886474,0.130120442962704,0.229902104433473,0,0.150704817835715,0.136072998302656,0.512454881139399,0.281105173679186,0.517406741478031,0.431135985865684,0.378212160335639,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0.36012412292203,0.23674473558521,0,0,0.232533944750408,0,0.116765342367169,0.16455984991348,0.492502392237286,0.0810688095458557,0.146199987425332,0,0,0.420579897128254,0.514523061896422,0,0,0.213288250535234,0,0.257734922644187,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0.948339504765408,0.114248512609729,0,0,0.387904974335251,0.0701358198903186,0.189709611372772,0,0,0,0,0,0,0,0,0,0,0.575392274901621,0.810676133875177,0.549122826376163,0,0.372140947668503,0,0.252578877947112,0.179397413521912,0.482443521363367,0.184753190166605,0,0.325929952884052,0,0,0,0.238043640886014,0,0,0.221464689648775,0.478364305972461,0.491589944147214,0.172684981865896,0.144649058581512,12.0633027151418,5.98296252200581,0,0,0.642202359951168,0.117211686592203,0,0,0.315508219416257,0.390438744296638,0.215423397732799,0.238968797952552,0,0.566153061577665,0.809621403349789,1.75353514746787,0.395287777946524,0.321321316421807,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0.164140899745061,0,0.927126510052548,1.19609616558497,0,0.185194527369712,0,0.27338845544205,0.228778173206523,0,0,0,0,0,0,0,0,0.218362563746178,0.539457385539283,0.41326727862668,0,0,0,0,0.149516546043979,0,0.194451188344048,0.258319646955462,0.168956125490778,0.234714477291508,0,0,0,0,0.632022241256357,0,0,0.129920822977795,0,0.198681354781265,0.120195449519969,0,0,0,0.100826185136841,0.194915761479505,0.0962118416403295,0.116876902181569,0,0,0.0897138566094757,0,0,1.12609485270709,0.183151624267265,0,0,1.12950368523413,4.14292712856459,2.86447756719698,0.859265911718438,0.685082519770642,0,0,0.45032120322422,0.906284817968409,0,0.103787347584177,0.798049746802062,0.341467211508268,0.729320151204882,0,0,0.222246727801615,0.618105171716683,0,0.252697211763798,0.25347929989024,0.188626341386076,0.468207537349412,0.256100609619477,0.287177344778066,0,0.579421629724277,0,0,0.294397840268795,0,0.354951612318675,0.238436189947321,0.436039249896986,0.0941093804153306,0.0846146078916765,0.182927972872773,0.263069711437843,0.271608227691724,0,0.237270036248348,0.197008964751127,0,0.154936841185966,0.192906610981141,0.249810577937946,0,0.859484216193193,0.57386499620653,0,0 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| ||
|short_description=p7@Sdc3 | |short_description=p7@Sdc3 | ||
}} | }} |
Latest revision as of 10:09, 26 September 2015
Short description: | p7@Sdc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Sdc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:38 |
Association with transcript: | 0bp_to_ENSMUST00000140623_5end |
EntrezGene: | Sdc3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.12e-26 | 23 |
neuroblast (sensu Vertebrata) | 1.12e-26 | 23 |
electrically responsive cell | 5.06e-21 | 39 |
electrically active cell | 5.06e-21 | 39 |
neuron | 5.07e-20 | 33 |
neuronal stem cell | 5.07e-20 | 33 |
neuroblast | 5.07e-20 | 33 |
electrically signaling cell | 5.07e-20 | 33 |
neural cell | 6.94e-19 | 43 |
ectodermal cell | 2.32e-18 | 44 |
neurectodermal cell | 2.32e-18 | 44 |
somatic stem cell | 1.13e-15 | 91 |
multi fate stem cell | 1.13e-15 | 91 |
stem cell | 2.31e-14 | 97 |
embryonic cell | 9.15e-13 | 70 |
monopoietic cell | 1.30e-12 | 4 |
myeloid leukocyte | 1.30e-12 | 4 |
phagocyte | 1.30e-12 | 4 |
monocyte | 1.30e-12 | 4 |
macrophage | 1.30e-12 | 4 |
tissue-resident macrophage | 1.30e-12 | 4 |
macrophage dendritic cell progenitor | 1.30e-12 | 4 |
monoblast | 1.30e-12 | 4 |
promonocyte | 1.30e-12 | 4 |
bone marrow cell | 3.89e-10 | 3 |
mesenchymal stem cell of the bone marrow | 3.89e-10 | 3 |
striatum neuron | 8.11e-09 | 3 |
granule cell | 9.76e-09 | 3 |
raphe nuclei neuron | 3.69e-08 | 3 |
bone marrow macrophage | 3.22e-07 | 2 |
defensive cell | 3.47e-07 | 7 |
granulocyte monocyte progenitor cell | 3.47e-07 | 7 |
central nervous system macrophage | 5.14e-07 | 2 |
microglial cell | 5.14e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.46e-15 | 73 |
nervous system | 1.86e-14 | 75 |
gray matter | 4.92e-11 | 34 |
regional part of nervous system | 7.96e-11 | 54 |
ectoderm-derived structure | 2.26e-10 | 95 |
ectoderm | 2.26e-10 | 95 |
presumptive ectoderm | 2.26e-10 | 95 |
regional part of spinal cord | 1.50e-09 | 5 |
gray matter of spinal cord | 1.50e-09 | 5 |
bone marrow | 1.29e-08 | 16 |
raphe nuclei | 3.69e-08 | 3 |
reticular formation | 3.69e-08 | 3 |
basal ganglion | 3.90e-08 | 8 |
nuclear complex of neuraxis | 3.90e-08 | 8 |
aggregate regional part of brain | 3.90e-08 | 8 |
collection of basal ganglia | 3.90e-08 | 8 |
cerebral subcortex | 3.90e-08 | 8 |
spinal cord | 5.89e-08 | 6 |
dorsal region element | 5.89e-08 | 6 |
dorsum | 5.89e-08 | 6 |
neural tube | 2.00e-07 | 52 |
neural rod | 2.00e-07 | 52 |
future spinal cord | 2.00e-07 | 52 |
neural keel | 2.00e-07 | 52 |