FFCP PHASE1:Mm9::chr1:173987720..173987729,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18071 | |EntrezGene=18071 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1425 | |||
|TSSclassifier=NA | |||
|UniProt=Q02576,Q3UEV3 | |UniProt=Q02576,Q3UEV3 | ||
|association_with_transcript=0bp_to_NM_010916,uc007dpj.2_5end | |association_with_transcript=0bp_to_NM_010916,uc007dpj.2_5end | ||
|cluster_id=chr1:173987720..173987729,- | |||
|description=CAGE_peak_1_at_Nhlh1_5end | |description=CAGE_peak_1_at_Nhlh1_5end | ||
|id=chr1:173987720..173987729,- | |id=chr1:173987720..173987729,- | ||
|ontology_enrichment_celltype=CL:0000117!2.56e-17!23;CL:0000337!2.56e-17!23;CL:0000540!6.51e-13!33;CL:0000047!6.51e-13!33;CL:0000031!6.51e-13!33;CL:0000404!6.51e-13!33;CL:0000393!1.37e-09!39;CL:0000211!1.37e-09!39;CL:0000221!1.32e-08!44;CL:0000133!1.32e-08!44;CL:0002319!6.10e-08!43;CL:0002609!4.70e-07!6 | |ontology_enrichment_celltype=CL:0000117!2.56e-17!23;CL:0000337!2.56e-17!23;CL:0000540!6.51e-13!33;CL:0000047!6.51e-13!33;CL:0000031!6.51e-13!33;CL:0000404!6.51e-13!33;CL:0000393!1.37e-09!39;CL:0000211!1.37e-09!39;CL:0000221!1.32e-08!44;CL:0000133!1.32e-08!44;CL:0002319!6.10e-08!43;CL:0002609!4.70e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.61e-17,23;CL:0000337,8.61e-17,23;CL:0000540,1.00e-11,33;CL:0000047,1.00e-11,33;CL:0000031,1.00e-11,33;CL:0000404,1.00e-11,33;CL:0002609,1.14e-09,6;CL:0000393,4.15e-09,39;CL:0000211,4.15e-09,39;CL:0000221,1.26e-08,44;CL:0000133,1.26e-08,44;CL:0002319,8.64e-08,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!4.26e-11!49;UBERON:0002346!7.96e-11!71;UBERON:0003075!7.96e-11!71;UBERON:0007284!7.96e-11!71;UBERON:0004121!1.51e-10!102;UBERON:0000924!1.51e-10!102;UBERON:0006601!1.51e-10!102;UBERON:0000033!4.95e-10!63;UBERON:0001049!2.40e-08!52;UBERON:0005068!2.40e-08!52;UBERON:0006241!2.40e-08!52;UBERON:0007135!2.40e-08!52;UBERON:0000020!3.40e-08!12;UBERON:0001032!3.40e-08!12;UBERON:0004456!3.40e-08!12;UBERON:0001017!4.90e-08!73;UBERON:0005743!4.90e-08!73;UBERON:0000073!1.57e-07!75;UBERON:0001016!1.57e-07!75;UBERON:0005085!2.66e-07!13;UBERON:0000970!2.70e-07!9;UBERON:0000019!2.70e-07!9;UBERON:0000047!2.70e-07!9;UBERON:0004088!2.70e-07!9;UBERON:0002104!2.70e-07!9;UBERON:0001456!2.70e-07!9;UBERON:0003072!2.70e-07!9;UBERON:0003071!2.70e-07!9;UBERON:0004128!2.70e-07!9;UBERON:0002020!4.42e-07!34;UBERON:0002780!9.32e-07!39;UBERON:0001890!9.32e-07!39;UBERON:0006240!9.32e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.96e-12,64;UBERON:0003075,1.96e-12,64;UBERON:0007284,1.96e-12,64;UBERON:0010371,4.00e-12,73;UBERON:0003056,1.53e-11,49;UBERON:0004121,6.19e-10,95;UBERON:0000924,6.19e-10,95;UBERON:0006601,6.19e-10,95;UBERON:0001049,1.25e-09,52;UBERON:0005068,1.25e-09,52;UBERON:0006241,1.25e-09,52;UBERON:0007135,1.25e-09,52;UBERON:0000073,4.88e-09,54;UBERON:0001017,1.93e-08,73;UBERON:0002780,3.84e-08,39;UBERON:0001890,3.84e-08,39;UBERON:0006240,3.84e-08,39;UBERON:0002020,4.17e-08,34;UBERON:0001016,5.07e-08,75;UBERON:0001948,5.51e-08,5;UBERON:0002315,5.51e-08,5;UBERON:0010314,7.33e-08,92;UBERON:0000007,7.82e-08,8;UBERON:0003296,7.82e-08,8;UBERON:0010133,7.82e-08,8;UBERON:0003080,8.08e-08,40;UBERON:0000020,4.75e-07,12;UBERON:0001032,4.75e-07,12;UBERON:0004456,4.75e-07,12 | |||
|phase1_expression=24.1824759128239,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0177473208022,5.28990979272033,11.4089652631112,0,0,0,0,0,0,0,29.2404706709907,20.7909145030804,20.8221711737868,3.71346279724945,5.07997644188711,5.38959516545798,3.1629005436018,2.75765635983006,0,0.255374676170375,0.153606533256243,9.62769900430415,8.78281378583133,7.8137005583514,0.837548997004143,0.56276261003168,0.45839474333043,5.89257170947335,5.26775218956681,11.3703661953433,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,11.1266301623578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0,0,0,0,0,0,0,0.420883711772948,4.55421550369463,6.20735681970377,3.96136685571768,3.0140963567143,0.748401490664606,2.17793324484245,2.90475346135159,0.776110112217047,0,0,0,0.43839146485515,0,0,1.23469281844766,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47202963994889,12.4514580978934,0,0,0,0.464473343720877,0.257734922644187,0,0,0,0,0,0,0.198956472041151,0,0,0.216138049874694,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0.703270119553219,0,0,0.315508219416257,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,3.39892890616974,0.906970670894253,0.754420319023592,0,0,0,0,0,0,0,0,0,2.34079422240703,2.58717367565509,9.85950361145325,7.80297028026004,2.31879462882692,1.48094118541909,2.43571959291679,0,0,0,0.16488625294148,0.161464426695906,0.542816324353403,0.477489376012546,0.164140899745061,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0.202725215290164,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.4279001581233,11.1726964552289,9.73181552798565,2.91728060481953,3.14419743941973,1.47074806760011,1.77797382241292,0.824140228955577,2.88827288632634,1.51618327058278,1.52087579934144,1.88626341386076,1.68554713445788,2.04880487695582,1.7230640686684,0.476293691283074,1.73826488917283,2.70072908649187,0.824171801606613,1.61918812147837,0.685738504770831,1.59728225543404,2.62279808942053,1.74415699958794,1.12931256498397,1.18460451048347,1.28049581010941,1.57841826862706,1.08643291076689,1.12228454331548,0.830445126869219,1.87158516513571,1.63692417267876,1.08455788830176,1.92906610981141,5.49583271463481,0.935726433781634,0.859484216193193,0.191288332068843,0,0 | |phase1_expression=24.1824759128239,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0177473208022,5.28990979272033,11.4089652631112,0,0,0,0,0,0,0,29.2404706709907,20.7909145030804,20.8221711737868,3.71346279724945,5.07997644188711,5.38959516545798,3.1629005436018,2.75765635983006,0,0.255374676170375,0.153606533256243,9.62769900430415,8.78281378583133,7.8137005583514,0.837548997004143,0.56276261003168,0.45839474333043,5.89257170947335,5.26775218956681,11.3703661953433,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,11.1266301623578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0,0,0,0,0,0,0,0.420883711772948,4.55421550369463,6.20735681970377,3.96136685571768,3.0140963567143,0.748401490664606,2.17793324484245,2.90475346135159,0.776110112217047,0,0,0,0.43839146485515,0,0,1.23469281844766,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47202963994889,12.4514580978934,0,0,0,0.464473343720877,0.257734922644187,0,0,0,0,0,0,0.198956472041151,0,0,0.216138049874694,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0.703270119553219,0,0,0.315508219416257,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,3.39892890616974,0.906970670894253,0.754420319023592,0,0,0,0,0,0,0,0,0,2.34079422240703,2.58717367565509,9.85950361145325,7.80297028026004,2.31879462882692,1.48094118541909,2.43571959291679,0,0,0,0.16488625294148,0.161464426695906,0.542816324353403,0.477489376012546,0.164140899745061,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0.202725215290164,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.4279001581233,11.1726964552289,9.73181552798565,2.91728060481953,3.14419743941973,1.47074806760011,1.77797382241292,0.824140228955577,2.88827288632634,1.51618327058278,1.52087579934144,1.88626341386076,1.68554713445788,2.04880487695582,1.7230640686684,0.476293691283074,1.73826488917283,2.70072908649187,0.824171801606613,1.61918812147837,0.685738504770831,1.59728225543404,2.62279808942053,1.74415699958794,1.12931256498397,1.18460451048347,1.28049581010941,1.57841826862706,1.08643291076689,1.12228454331548,0.830445126869219,1.87158516513571,1.63692417267876,1.08455788830176,1.92906610981141,5.49583271463481,0.935726433781634,0.859484216193193,0.191288332068843,0,0 | ||
|short_description=p1@Nhlh1 | |short_description=p1@Nhlh1 | ||
}} | }} |
Latest revision as of 19:37, 26 September 2015
Short description: | p1@Nhlh1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nhlh1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1425 |
Association with transcript: | 0bp_to_NM_010916, uc007dpj.2_5end |
EntrezGene: | Nhlh1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.61e-17 | 23 |
neuroblast (sensu Vertebrata) | 8.61e-17 | 23 |
neuron | 1.00e-11 | 33 |
neuronal stem cell | 1.00e-11 | 33 |
neuroblast | 1.00e-11 | 33 |
electrically signaling cell | 1.00e-11 | 33 |
neuron of cerebral cortex | 1.14e-09 | 6 |
electrically responsive cell | 4.15e-09 | 39 |
electrically active cell | 4.15e-09 | 39 |
ectodermal cell | 1.26e-08 | 44 |
neurectodermal cell | 1.26e-08 | 44 |
neural cell | 8.64e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.96e-12 | 64 |
neural plate | 1.96e-12 | 64 |
presumptive neural plate | 1.96e-12 | 64 |
ecto-epithelium | 4.00e-12 | 73 |
pre-chordal neural plate | 1.53e-11 | 49 |
ectoderm-derived structure | 6.19e-10 | 95 |
ectoderm | 6.19e-10 | 95 |
presumptive ectoderm | 6.19e-10 | 95 |
neural tube | 1.25e-09 | 52 |
neural rod | 1.25e-09 | 52 |
future spinal cord | 1.25e-09 | 52 |
neural keel | 1.25e-09 | 52 |
regional part of nervous system | 4.88e-09 | 54 |
central nervous system | 1.93e-08 | 73 |
regional part of forebrain | 3.84e-08 | 39 |
forebrain | 3.84e-08 | 39 |
future forebrain | 3.84e-08 | 39 |
gray matter | 4.17e-08 | 34 |
nervous system | 5.07e-08 | 75 |
regional part of spinal cord | 5.51e-08 | 5 |
gray matter of spinal cord | 5.51e-08 | 5 |
structure with developmental contribution from neural crest | 7.33e-08 | 92 |
pituitary gland | 7.82e-08 | 8 |
gland of diencephalon | 7.82e-08 | 8 |
neuroendocrine gland | 7.82e-08 | 8 |
anterior neural tube | 8.08e-08 | 40 |
sense organ | 4.75e-07 | 12 |
sensory system | 4.75e-07 | 12 |
entire sense organ system | 4.75e-07 | 12 |