FFCP PHASE1:Mm9::chr2:74536071..74536083,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=15438 | |EntrezGene=15438 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=991 | |||
|TSSclassifier=NA | |||
|UniProt=P28357 | |UniProt=P28357 | ||
|association_with_transcript=251bp_to_NM_013555,uc008kdz.1_5end | |association_with_transcript=251bp_to_NM_013555,uc008kdz.1_5end | ||
|cluster_id=chr2:74536071..74536083,+ | |||
|description=CAGE_peak_4_at_Hoxd9_5end | |description=CAGE_peak_4_at_Hoxd9_5end | ||
|id=chr2:74536071..74536083,+ | |id=chr2:74536071..74536083,+ | ||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002611,5.50e-07,2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!3.70e-17!21;UBERON:0005156!3.10e-14!26;UBERON:0000990!3.10e-14!26;UBERON:0003133!3.16e-14!24;UBERON:0002113!5.61e-12!14;UBERON:0003918!5.61e-12!14;UBERON:0005095!5.61e-12!14;UBERON:0007687!5.61e-12!14;UBERON:0001008!1.46e-11!17;UBERON:0006554!3.54e-11!16;UBERON:0000991!2.33e-10!18;UBERON:0005564!2.33e-10!18;UBERON:0003100!1.82e-09!11;UBERON:0004176!1.87e-09!17;UBERON:0009196!1.87e-09!17;UBERON:0009117!1.87e-09!17;UBERON:0000474!4.68e-08!9;UBERON:0003135!1.07e-07!15;UBERON:0003103!3.16e-07!43;UBERON:0003134!3.73e-07!8;UBERON:0003101!5.53e-07!16;UBERON:0000079!5.53e-07!16;UBERON:0000473!6.17e-07!14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,4.01e-29,21;UBERON:0005156,1.12e-26,26;UBERON:0000990,1.12e-26,26;UBERON:0000991,1.34e-26,18;UBERON:0005564,1.34e-26,18;UBERON:0003133,1.56e-25,24;UBERON:0004176,5.34e-24,17;UBERON:0009196,5.34e-24,17;UBERON:0009117,5.34e-24,17;UBERON:0002113,7.33e-24,14;UBERON:0003918,7.33e-24,14;UBERON:0011143,7.33e-24,14;UBERON:0005095,7.33e-24,14;UBERON:0007687,7.33e-24,14;UBERON:0003135,5.89e-19,15;UBERON:0006554,4.29e-18,18;UBERON:0003101,1.18e-17,16;UBERON:0000079,1.18e-17,16;UBERON:0001008,4.95e-17,19;UBERON:0000473,8.60e-17,14;UBERON:0003886,5.39e-13,38;UBERON:0003103,1.26e-12,43;UBERON:0002553,1.38e-12,39;UBERON:0002323,1.46e-11,37;UBERON:0004458,1.46e-11,37;UBERON:0001948,6.71e-10,5;UBERON:0002315,6.71e-10,5;UBERON:0000992,1.81e-09,3;UBERON:0002240,2.94e-08,6;UBERON:0005174,2.94e-08,6;UBERON:0001137,2.94e-08,6;UBERON:0000474,6.64e-08,9;UBERON:0002256,5.50e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.71346279724945,1.54607978666129,0,0,0,0,0,0,0,0,0,0,0,0,0.883885756421003,1.42371680799103,4.10078780815661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0.258937883647172,0.29688427812965,0.346970653532272,0.608930956624282,0.230615497256059,0.150722640552623,0.470354828542819,0,0,0,0,0.647067399789637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73126918545538,0.622034853050465,1.26361379216837,0,0,0,0,0,0,0,0,0,2.37124792226126,0.189106080167819,0.351902248327898,0.43839146485515,0,0,0.411564272815887,2.58744546864041,0,0,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0,0.146199987425332,0,0.134206418760372,0,0,0,0,0.426576501070468,0.696710015581316,0.128867461322093,0.201683524623343,0.22237804384487,0,0,0,0,0,0,0,0,0,3.60369011810855,1.5994791765362,1.1270773567308,1.83286195060783,2.90928730751439,6.94344616914154,3.22506339333712,0.885660887877613,1.56998727841375,1.85095745882701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0.491764273019036,0.827810238914197,0,0,0.491804836130026,0,0,0,0,0,0,0,0,0,0,0,1.56134093729095,2.31485284767432,1.95464351224291,1.81467135269789,0,0,0,0,0,0.614870295887855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704015124191131,0.21183207086382,0,0.16488625294148,0.484393280087717,0.361877549568935,0.238744688006273,0,0,0.18542530201051,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0.777689839750757,0,0,7.17679421011098,5.46013018508422,5.44463327363333,3.61647505737647,2.87225413334323,5.16371850041317,1.5624526181274,1.25831213310853,0,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,0.19318959403219,0.563047426353546,1.28206136987086,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0.341467211508268,0,0,0.183843508450014,0.222246727801615,0,0.64183841918363,0,0.760437899670719,0.377252682772152,0.280924522409647,0.384150914429216,0.34461281373368,0,0.231768651889711,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.145346416632329,0.282328141245992,0.0846146078916765,0.182927972872773,0.263069711437843,0,0,0.474540072496697,0.492522411877817,0,0.309873682371932,0.578719832943424,0.249810577937946,0.233931608445408,0.429742108096597,0.57386499620653,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.71346279724945,1.54607978666129,0,0,0,0,0,0,0,0,0,0,0,0,0.883885756421003,1.42371680799103,4.10078780815661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0.258937883647172,0.29688427812965,0.346970653532272,0.608930956624282,0.230615497256059,0.150722640552623,0.470354828542819,0,0,0,0,0.647067399789637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73126918545538,0.622034853050465,1.26361379216837,0,0,0,0,0,0,0,0,0,2.37124792226126,0.189106080167819,0.351902248327898,0.43839146485515,0,0,0.411564272815887,2.58744546864041,0,0,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0,0.146199987425332,0,0.134206418760372,0,0,0,0,0.426576501070468,0.696710015581316,0.128867461322093,0.201683524623343,0.22237804384487,0,0,0,0,0,0,0,0,0,3.60369011810855,1.5994791765362,1.1270773567308,1.83286195060783,2.90928730751439,6.94344616914154,3.22506339333712,0.885660887877613,1.56998727841375,1.85095745882701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0.491764273019036,0.827810238914197,0,0,0.491804836130026,0,0,0,0,0,0,0,0,0,0,0,1.56134093729095,2.31485284767432,1.95464351224291,1.81467135269789,0,0,0,0,0,0.614870295887855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704015124191131,0.21183207086382,0,0.16488625294148,0.484393280087717,0.361877549568935,0.238744688006273,0,0,0.18542530201051,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0.777689839750757,0,0,7.17679421011098,5.46013018508422,5.44463327363333,3.61647505737647,2.87225413334323,5.16371850041317,1.5624526181274,1.25831213310853,0,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,0.19318959403219,0.563047426353546,1.28206136987086,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0.341467211508268,0,0,0.183843508450014,0.222246727801615,0,0.64183841918363,0,0.760437899670719,0.377252682772152,0.280924522409647,0.384150914429216,0.34461281373368,0,0.231768651889711,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.145346416632329,0.282328141245992,0.0846146078916765,0.182927972872773,0.263069711437843,0,0,0.474540072496697,0.492522411877817,0,0.309873682371932,0.578719832943424,0.249810577937946,0.233931608445408,0.429742108096597,0.57386499620653,0,0 | ||
|short_description=p4@Hoxd9 | |short_description=p4@Hoxd9 | ||
}} | }} |
Latest revision as of 23:26, 26 September 2015
Short description: | p4@Hoxd9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Hoxd9_5end |
Coexpression cluster: | MCL_coexpression_mm9:991 |
Association with transcript: | 251bp_to_NM_013555, uc008kdz.1_5end |
EntrezGene: | Hoxd9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the dorsal spinal cord | 5.50e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 4.01e-29 | 21 |
reproductive structure | 1.12e-26 | 26 |
reproductive system | 1.12e-26 | 26 |
gonad | 1.34e-26 | 18 |
gonad primordium | 1.34e-26 | 18 |
reproductive organ | 1.56e-25 | 24 |
external genitalia | 5.34e-24 | 17 |
indifferent external genitalia | 5.34e-24 | 17 |
indifferent gonad | 5.34e-24 | 17 |
kidney | 7.33e-24 | 14 |
kidney mesenchyme | 7.33e-24 | 14 |
upper urinary tract | 7.33e-24 | 14 |
kidney rudiment | 7.33e-24 | 14 |
kidney field | 7.33e-24 | 14 |
male reproductive organ | 5.89e-19 | 15 |
urinary system structure | 4.29e-18 | 18 |
male organism | 1.18e-17 | 16 |
male reproductive system | 1.18e-17 | 16 |
renal system | 4.95e-17 | 19 |
testis | 8.60e-17 | 14 |
body cavity precursor | 5.39e-13 | 38 |
compound organ | 1.26e-12 | 43 |
anatomical cavity | 1.38e-12 | 39 |
body cavity | 1.46e-11 | 37 |
body cavity or lining | 1.46e-11 | 37 |
regional part of spinal cord | 6.71e-10 | 5 |
gray matter of spinal cord | 6.71e-10 | 5 |
female gonad | 1.81e-09 | 3 |
spinal cord | 2.94e-08 | 6 |
dorsal region element | 2.94e-08 | 6 |
dorsum | 2.94e-08 | 6 |
female reproductive system | 6.64e-08 | 9 |
dorsal horn of spinal cord | 5.50e-07 | 2 |