FFCP PHASE1:Hg19::chr12:57350983..57351026,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8608 | |EntrezGene=8608 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29674 | |HGNC=29674 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=221bp_to_BC160081_5end | |association_with_transcript=221bp_to_BC160081_5end | ||
|cluster_id=chr12:57350983..57351026,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_4_at_RDH16_5end | |description=CAGE_peak_4_at_RDH16_5end | ||
|id=chr12:57350983..57351026,- | |id=chr12:57350983..57351026,- | ||
|ontology_enrichment_celltype=CL:0000181!1.72e-11!12;CL:0000417!1.72e-11!12;CL:0000668!1.72e-11!12;CL:0000414!1.72e-11!12;CL:0000412!1.72e-11!12;CL:0000182!1.72e-11!12 | |ontology_enrichment_celltype=CL:0000181!1.72e-11!12;CL:0000417!1.72e-11!12;CL:0000668!1.72e-11!12;CL:0000414!1.72e-11!12;CL:0000412!1.72e-11!12;CL:0000182!1.72e-11!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.45e-30;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.45e-30,12;CL:0000223,6.14e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000223;6.70e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.57e-12!19;UBERON:0006925!1.57e-12!19;UBERON:0008836!1.57e-12!19;UBERON:0008835!7.39e-11!22;UBERON:0003894!7.39e-11!22;UBERON:0009854!2.14e-10!23;UBERON:0007499!1.39e-09!25;UBERON:0009497!1.39e-09!25;UBERON:0000015!1.39e-09!25;UBERON:0002423!1.39e-09!25;UBERON:0006235!1.39e-09!25;UBERON:0004161!1.39e-09!25;UBERON:0005057!3.18e-09!26;UBERON:0009856!3.18e-09!26;UBERON:0002365!9.03e-08!31;UBERON:0002330!9.03e-08!31;UBERON:0002368!6.65e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;7.04e-34;19!UBERON:0006925;7.04e-34;19!UBERON:0002423;5.75e-26;25!UBERON:0002365;8.79e-22;31!UBERON:0002330;8.79e-22;31!UBERON:0002368;1.66e-17;33!UBERON:0000949;1.13e-14;43!UBERON:0005172;8.84e-11;52!UBERON:0005173;8.84e-11;52!UBERON:0002530;4.34e-08;57!UBERON:0001007;6.26e-08;81!UBERON:0002417;2.03e-07;58!UBERON:0000916;2.03e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,7.04e-34,19;UBERON:0006925,7.04e-34,19;UBERON:0008836,7.04e-34,19;UBERON:0008835,2.19e-29,22;UBERON:0003894,2.19e-29,22;UBERON:0009854,3.80e-28,23;UBERON:0007499,5.75e-26,25;UBERON:0009497,5.75e-26,25;UBERON:0000015,5.75e-26,25;UBERON:0002423,5.75e-26,25;UBERON:0006235,5.75e-26,25;UBERON:0004161,5.75e-26,25;UBERON:0009856,5.31e-25,26;UBERON:0002365,4.17e-21,31;UBERON:0002330,4.17e-21,31;UBERON:0002368,8.68e-19,35;UBERON:0000949,8.74e-15,45;UBERON:0003929,1.93e-12,54;UBERON:0005172,1.93e-12,54;UBERON:0005173,1.93e-12,54;UBERON:0002530,1.91e-11,59;UBERON:0002417,2.88e-11,60;UBERON:0000916,2.88e-11,60;UBERON:0005911,2.05e-08,82;UBERON:0001041,5.76e-08,87;UBERON:0005177,6.11e-07,101 | |||
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|short_description=p4@RDH16 | |short_description=p4@RDH16 | ||
}} | }} |
Latest revision as of 12:28, 19 September 2015
Short description: | p4@RDH16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RDH16_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 221bp_to_BC160081_5end |
EntrezGene: | RDH16 |
HGNC: | 29674 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.45e-30 | 12 |
endodermal cell | 6.14e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 7.04e-34 | 19 |
digestive gland | 7.04e-34 | 19 |
liver bud | 7.04e-34 | 19 |
hepatic diverticulum | 2.19e-29 | 22 |
liver primordium | 2.19e-29 | 22 |
digestive tract diverticulum | 3.80e-28 | 23 |
epithelial sac | 5.75e-26 | 25 |
epithelium of foregut-midgut junction | 5.75e-26 | 25 |
anatomical boundary | 5.75e-26 | 25 |
hepatobiliary system | 5.75e-26 | 25 |
foregut-midgut junction | 5.75e-26 | 25 |
septum transversum | 5.75e-26 | 25 |
sac | 5.31e-25 | 26 |
exocrine gland | 4.17e-21 | 31 |
exocrine system | 4.17e-21 | 31 |
endocrine gland | 8.68e-19 | 35 |
endocrine system | 8.74e-15 | 45 |
gut epithelium | 1.93e-12 | 54 |
abdomen element | 1.93e-12 | 54 |
abdominal segment element | 1.93e-12 | 54 |
gland | 1.91e-11 | 59 |
abdominal segment of trunk | 2.88e-11 | 60 |
abdomen | 2.88e-11 | 60 |
endo-epithelium | 2.05e-08 | 82 |
foregut | 5.76e-08 | 87 |
trunk region element | 6.11e-07 | 101 |