FFCP PHASE1:Mm9::chr13:95645608..95645616,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18420 | |EntrezGene=18420 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=141 | |||
|TSSclassifier=NA | |||
|UniProt=O09113 | |UniProt=O09113 | ||
|association_with_transcript=26bp_to_ENSMUST00000022195,NM_011021,uc007rly.1_5end | |association_with_transcript=26bp_to_ENSMUST00000022195,NM_011021,uc007rly.1_5end | ||
|cluster_id=chr13:95645608..95645616,+ | |||
|description=CAGE_peak_2_at_Otp_5end | |description=CAGE_peak_2_at_Otp_5end | ||
|id=chr13:95645608..95645616,+ | |id=chr13:95645608..95645616,+ | ||
|ontology_enrichment_celltype=CL:0000117!6.25e-19!23;CL:0000337!6.25e-19!23;CL:0000540!7.58e-12!33;CL:0000047!7.58e-12!33;CL:0000031!7.58e-12!33;CL:0000404!7.58e-12!33;CL:0000393!2.28e-09!39;CL:0000211!2.28e-09!39;CL:0002319!4.10e-08!43;CL:0000221!7.75e-08!44;CL:0000133!7.75e-08!44;CL:0002613!2.31e-07!3;CL:0002612!5.17e-07!3;CL:0000120!7.35e-07!3 | |ontology_enrichment_celltype=CL:0000117!6.25e-19!23;CL:0000337!6.25e-19!23;CL:0000540!7.58e-12!33;CL:0000047!7.58e-12!33;CL:0000031!7.58e-12!33;CL:0000404!7.58e-12!33;CL:0000393!2.28e-09!39;CL:0000211!2.28e-09!39;CL:0002319!4.10e-08!43;CL:0000221!7.75e-08!44;CL:0000133!7.75e-08!44;CL:0002613!2.31e-07!3;CL:0002612!5.17e-07!3;CL:0000120!7.35e-07!3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.42e-35,23;CL:0000337,9.42e-35,23;CL:0000540,1.12e-23,33;CL:0000047,1.12e-23,33;CL:0000031,1.12e-23,33;CL:0000404,1.12e-23,33;CL:0000393,9.52e-20,39;CL:0000211,9.52e-20,39;CL:0002319,9.79e-18,43;CL:0000221,2.74e-17,44;CL:0000133,2.74e-17,44;CL:0002613,1.28e-16,3;CL:0002612,1.03e-15,3;CL:0000120,2.55e-15,3;CL:0002611,8.68e-11,2;CL:0002321,3.84e-10,70;CL:0000723,2.47e-07,91;CL:0000048,2.47e-07,91;CL:0000034,9.39e-07,97 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002240!7.25e-12!6;UBERON:0005174!7.25e-12!6;UBERON:0001137!7.25e-12!6;UBERON:0001948!1.57e-10!5;UBERON:0002315!1.57e-10!5;UBERON:0002298!2.11e-10!6;UBERON:0003076!3.39e-09!12;UBERON:0003057!3.39e-09!12;UBERON:0001017!3.59e-09!73;UBERON:0005743!3.59e-09!73;UBERON:0000073!9.18e-09!75;UBERON:0001016!9.18e-09!75;UBERON:0001049!1.22e-08!52;UBERON:0005068!1.22e-08!52;UBERON:0006241!1.22e-08!52;UBERON:0007135!1.22e-08!52;UBERON:0002420!1.33e-08!8;UBERON:0007245!1.33e-08!8;UBERON:0010009!1.33e-08!8;UBERON:0010011!1.33e-08!8;UBERON:0000454!1.33e-08!8;UBERON:0002950!1.25e-07!4;UBERON:0001891!1.25e-07!4;UBERON:0009616!1.25e-07!4;UBERON:0002257!5.17e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,7.86e-25,5;UBERON:0002315,7.86e-25,5;UBERON:0002240,1.09e-20,6;UBERON:0005174,1.09e-20,6;UBERON:0001137,1.09e-20,6;UBERON:0002257,1.03e-15,3;UBERON:0001017,3.69e-13,73;UBERON:0001016,9.47e-13,75;UBERON:0000073,1.64e-11,54;UBERON:0002020,6.84e-11,34;UBERON:0002256,8.68e-11,2;UBERON:0002420,1.43e-10,8;UBERON:0007245,1.43e-10,8;UBERON:0010009,1.43e-10,8;UBERON:0010011,1.43e-10,8;UBERON:0000454,1.43e-10,8;UBERON:0003076,2.68e-10,12;UBERON:0003057,2.68e-10,12;UBERON:0000369,3.54e-10,5;UBERON:0002435,3.54e-10,5;UBERON:0000204,3.54e-10,5;UBERON:0010082,3.54e-10,5;UBERON:0001049,4.64e-10,52;UBERON:0005068,4.64e-10,52;UBERON:0006241,4.64e-10,52;UBERON:0007135,4.64e-10,52;UBERON:0004121,1.36e-09,95;UBERON:0000924,1.36e-09,95;UBERON:0006601,1.36e-09,95;UBERON:0002346,7.29e-08,64;UBERON:0003075,7.29e-08,64;UBERON:0007284,7.29e-08,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63011399117477,1.05798195854407,3.1691570175309,0,0,0,0,0,0,0,0,0,0,1.99955689082663,1.54607978666129,0,0,0,1.10115880999389,0,0.307213066512487,5.67111037239834,4.94033275453012,6.77187381723788,1.11673199600552,0.56276261003168,0.30559649555362,2.65165726926301,1.28134512719193,3.72798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748953197024114,0,0,0.173824320192276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08036656418786,1.55230420539305,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.32119512269365,1.19707462020309,0.512200817262403,0,0.419226325255965,0,0.44449345560323,0.412070114477788,0,0,0.25347929989024,0.188626341386076,0.0936415074698824,0.192075457214608,0.114870937911227,0,0.347652977834566,0.38581844092741,0.824171801606613,0,0,0.354951612318675,0.476872379894642,0.145346416632329,0.0941093804153306,0.25384382367503,0.182927972872773,0,0.135804113845862,0.561142271657738,0.237270036248348,0.0985044823755635,0.818462086339379,0,0.385813221962283,1.99848462350357,0,0,0.57386499620653,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63011399117477,1.05798195854407,3.1691570175309,0,0,0,0,0,0,0,0,0,0,1.99955689082663,1.54607978666129,0,0,0,1.10115880999389,0,0.307213066512487,5.67111037239834,4.94033275453012,6.77187381723788,1.11673199600552,0.56276261003168,0.30559649555362,2.65165726926301,1.28134512719193,3.72798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748953197024114,0,0,0.173824320192276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08036656418786,1.55230420539305,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.32119512269365,1.19707462020309,0.512200817262403,0,0.419226325255965,0,0.44449345560323,0.412070114477788,0,0,0.25347929989024,0.188626341386076,0.0936415074698824,0.192075457214608,0.114870937911227,0,0.347652977834566,0.38581844092741,0.824171801606613,0,0,0.354951612318675,0.476872379894642,0.145346416632329,0.0941093804153306,0.25384382367503,0.182927972872773,0,0.135804113845862,0.561142271657738,0.237270036248348,0.0985044823755635,0.818462086339379,0,0.385813221962283,1.99848462350357,0,0,0.57386499620653,0,0 | ||
|short_description=p2@Otp | |short_description=p2@Otp | ||
}} | }} |
Latest revision as of 13:41, 25 September 2015
Short description: | p2@Otp |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Otp_5end |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | 26bp_to_ENSMUST00000022195, NM_011021, uc007rly.1_5end |
EntrezGene: | Otp |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.42e-35 | 23 |
neuroblast (sensu Vertebrata) | 9.42e-35 | 23 |
neuron | 1.12e-23 | 33 |
neuronal stem cell | 1.12e-23 | 33 |
neuroblast | 1.12e-23 | 33 |
electrically signaling cell | 1.12e-23 | 33 |
electrically responsive cell | 9.52e-20 | 39 |
electrically active cell | 9.52e-20 | 39 |
neural cell | 9.79e-18 | 43 |
ectodermal cell | 2.74e-17 | 44 |
neurectodermal cell | 2.74e-17 | 44 |
striatum neuron | 1.28e-16 | 3 |
neuron of the ventral spinal cord | 1.03e-15 | 3 |
granule cell | 2.55e-15 | 3 |
neuron of the dorsal spinal cord | 8.68e-11 | 2 |
embryonic cell | 3.84e-10 | 70 |
somatic stem cell | 2.47e-07 | 91 |
multi fate stem cell | 2.47e-07 | 91 |
stem cell | 9.39e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 7.86e-25 | 5 |
gray matter of spinal cord | 7.86e-25 | 5 |
spinal cord | 1.09e-20 | 6 |
dorsal region element | 1.09e-20 | 6 |
dorsum | 1.09e-20 | 6 |
ventral horn of spinal cord | 1.03e-15 | 3 |
central nervous system | 3.69e-13 | 73 |
nervous system | 9.47e-13 | 75 |
regional part of nervous system | 1.64e-11 | 54 |
gray matter | 6.84e-11 | 34 |
dorsal horn of spinal cord | 8.68e-11 | 2 |
basal ganglion | 1.43e-10 | 8 |
nuclear complex of neuraxis | 1.43e-10 | 8 |
aggregate regional part of brain | 1.43e-10 | 8 |
collection of basal ganglia | 1.43e-10 | 8 |
cerebral subcortex | 1.43e-10 | 8 |
posterior neural tube | 2.68e-10 | 12 |
chordal neural plate | 2.68e-10 | 12 |
corpus striatum | 3.54e-10 | 5 |
striatum | 3.54e-10 | 5 |
ventral part of telencephalon | 3.54e-10 | 5 |
future corpus striatum | 3.54e-10 | 5 |
neural tube | 4.64e-10 | 52 |
neural rod | 4.64e-10 | 52 |
future spinal cord | 4.64e-10 | 52 |
neural keel | 4.64e-10 | 52 |
ectoderm-derived structure | 1.36e-09 | 95 |
ectoderm | 1.36e-09 | 95 |
presumptive ectoderm | 1.36e-09 | 95 |
neurectoderm | 7.29e-08 | 64 |
neural plate | 7.29e-08 | 64 |
presumptive neural plate | 7.29e-08 | 64 |