FFCP PHASE1:Mm9::chr16:5007456..5007469,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=26bp_to_uc007ybi.1_5end | |association_with_transcript=26bp_to_uc007ybi.1_5end | ||
|cluster_id=chr16:5007456..5007469,+ | |||
|description=CAGE_peak_1_at_uc007ybi.1_5end | |description=CAGE_peak_1_at_uc007ybi.1_5end | ||
|id=chr16:5007456..5007469,+ | |id=chr16:5007456..5007469,+ | ||
|ontology_enrichment_celltype=CL:0002563!7.24e-09!9;CL:0002251!7.24e-09!9;CL:0000066!1.95e-08!25;CL:0002076!5.47e-08!15;CL:0000075!4.62e-07!7;CL:0000239!7.29e-07!6;CL:0000677!7.29e-07!6;CL:0000212!7.29e-07!6;CL:0000584!7.29e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.42e-16,15;CL:0002563,9.15e-16,9;CL:0002251,9.15e-16,9;CL:0000066,1.93e-15,25;CL:0000239,1.87e-14,6;CL:0000677,1.87e-14,6;CL:0000584,1.87e-14,6;CL:0000075,2.85e-12,7;CL:0000223,7.97e-12,20;CL:0000682,3.13e-08,3;CL:0000068,4.16e-07,3;CL:0002202,4.16e-07,3;CL:0000069,4.16e-07,3;CL:0002632,4.16e-07,3;CL:0002368,4.16e-07,3;CL:0000307,4.16e-07,3;CL:0000377,4.16e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!4.96e-27!59;UBERON:0000160!3.19e-26!43;UBERON:0000344!2.61e-14!15;UBERON:0004119!2.21e-13!130;UBERON:0000925!2.21e-13!130;UBERON:0006595!2.21e-13!130;UBERON:0001007!2.40e-13!128;UBERON:0001555!2.40e-13!128;UBERON:0007026!2.40e-13!128;UBERON:0001242!1.37e-12!13;UBERON:0000060!1.37e-12!13;UBERON:0001262!1.37e-12!13;UBERON:0004786!1.37e-12!13;UBERON:0004921!3.74e-12!126;UBERON:0004185!3.74e-12!126;UBERON:0004923!1.13e-09!24;UBERON:0000485!4.19e-09!11;UBERON:0003350!7.24e-09!9;UBERON:0004808!7.24e-09!9;UBERON:0001277!7.24e-09!9;UBERON:0002108!9.02e-09!16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.98e-37,31;UBERON:0000344,7.64e-29,15;UBERON:0001242,1.13e-24,13;UBERON:0001262,1.13e-24,13;UBERON:0004786,1.13e-24,13;UBERON:0005409,1.15e-24,47;UBERON:0004923,1.02e-16,24;UBERON:0003350,9.15e-16,9;UBERON:0004808,9.15e-16,9;UBERON:0001277,9.15e-16,9;UBERON:0000485,1.25e-12,11;UBERON:0001007,6.64e-12,116;UBERON:0001555,6.64e-12,116;UBERON:0007026,6.64e-12,116;UBERON:0004119,1.40e-11,118;UBERON:0000925,1.40e-11,118;UBERON:0006595,1.40e-11,118;UBERON:0004921,4.28e-10,114;UBERON:0000331,2.38e-08,3;UBERON:0002116,2.38e-08,3;UBERON:0001204,2.38e-08,3;UBERON:0001168,2.38e-08,3;UBERON:0003126,4.16e-07,3;UBERON:0001005,4.16e-07,3;UBERON:0007196,4.16e-07,3;UBERON:0001558,4.16e-07,3 | |||
|phase1_expression=0.160148847104794,2.79180326111489,5.45999087267443,5.44435580352294,7.01254021924886,4.02910252588535,2.80335168714631,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,2.71987118748791,3.89995777814189,6.31655160526522,6.8921919385452,3.66301095566011,9.69119439227507,11.089325709437,3.10422714917427,0,0,0,0.866554859253824,1.32987716286794,2.24586291888606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,1.73192832808971,1.52015919285059,3.53867111510348,0.91347103775248,0,0,0,0,0,0,0,0,0.741584903203122,0,0,0,0,0,1.86391761218122,0,0,2.55457055208591,0,0,0,0,0,0,0,0,0,0,0,0.497627882440372,1.51633655060205,0.210441855886474,0,0,0,0,0,0.12811372028485,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.28670052774077,0.528901133327089,0,0.464473343720877,0.38660238396628,1.4117846723634,2.2237804384487,2.66315876557583,3.79623249235609,1.4822905925161,2.01068167040216,1.59165177632921,1.55971269695296,0,3.24207074812041,1.59313018603494,0,0.114248512609729,0,0.203651327845314,0.387904974335251,0.0701358198903186,0.0632365371242573,0.442830443938806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0.179397413521912,0.482443521363367,0.554259570499814,0,0,0,0,0.167506257441816,0,0,0,0.44292937929755,0,0.163863314715738,0.172684981865896,0.289298117163023,0,0,4.91764273019036,7.72622889653251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0.325773918707152,0.659880491890142,0,1.21390318077491,0.906970670894253,1.32023555829129,0.885905678642318,0.614870295887855,0.516856586336442,1.81766864738753,0.712994756769443,0.632073515871632,1.05418608574999,0,0,0,0.129358683782755,0.214337035031592,0,0.178368817602071,0.329098041204242,0.608929898229199,0.23467170806371,0,1.32317038832977,0,0.161464426695906,0,0,0,0.582961673259701,0,0,0.412773735926445,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,0.406638934253697,0.540026704109006,0.836353184057875,0.218362563746178,0.269728692769641,0.0826534557253359,0.523511883968059,1.29614973291793,0.621339313086926,0,0,0.165458490457098,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0.198681354781265,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375364950902364,0.549454872801795,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0.209613162627982,0,0.44449345560323,0,0,0.252697211763798,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0.229741875822453,0.476293691283074,0.115884325944855,0,0.412085900803307,0.441596760403192,0.342869252385415,0.354951612318675,0.476872379894642,0.436039249896986,0.0941093804153306,0.169229215783353,0,0.263069711437843,0.271608227691724,0,0.237270036248348,0,0,0.154936841185966,0,0,0.233931608445408,0,0,0,0 | |phase1_expression=0.160148847104794,2.79180326111489,5.45999087267443,5.44435580352294,7.01254021924886,4.02910252588535,2.80335168714631,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,2.71987118748791,3.89995777814189,6.31655160526522,6.8921919385452,3.66301095566011,9.69119439227507,11.089325709437,3.10422714917427,0,0,0,0.866554859253824,1.32987716286794,2.24586291888606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,1.73192832808971,1.52015919285059,3.53867111510348,0.91347103775248,0,0,0,0,0,0,0,0,0.741584903203122,0,0,0,0,0,1.86391761218122,0,0,2.55457055208591,0,0,0,0,0,0,0,0,0,0,0,0.497627882440372,1.51633655060205,0.210441855886474,0,0,0,0,0,0.12811372028485,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.28670052774077,0.528901133327089,0,0.464473343720877,0.38660238396628,1.4117846723634,2.2237804384487,2.66315876557583,3.79623249235609,1.4822905925161,2.01068167040216,1.59165177632921,1.55971269695296,0,3.24207074812041,1.59313018603494,0,0.114248512609729,0,0.203651327845314,0.387904974335251,0.0701358198903186,0.0632365371242573,0.442830443938806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0.179397413521912,0.482443521363367,0.554259570499814,0,0,0,0,0.167506257441816,0,0,0,0.44292937929755,0,0.163863314715738,0.172684981865896,0.289298117163023,0,0,4.91764273019036,7.72622889653251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0.325773918707152,0.659880491890142,0,1.21390318077491,0.906970670894253,1.32023555829129,0.885905678642318,0.614870295887855,0.516856586336442,1.81766864738753,0.712994756769443,0.632073515871632,1.05418608574999,0,0,0,0.129358683782755,0.214337035031592,0,0.178368817602071,0.329098041204242,0.608929898229199,0.23467170806371,0,1.32317038832977,0,0.161464426695906,0,0,0,0.582961673259701,0,0,0.412773735926445,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,0.406638934253697,0.540026704109006,0.836353184057875,0.218362563746178,0.269728692769641,0.0826534557253359,0.523511883968059,1.29614973291793,0.621339313086926,0,0,0.165458490457098,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0.198681354781265,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375364950902364,0.549454872801795,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0.209613162627982,0,0.44449345560323,0,0,0.252697211763798,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0.229741875822453,0.476293691283074,0.115884325944855,0,0.412085900803307,0.441596760403192,0.342869252385415,0.354951612318675,0.476872379894642,0.436039249896986,0.0941093804153306,0.169229215783353,0,0.263069711437843,0.271608227691724,0,0.237270036248348,0,0,0.154936841185966,0,0,0.233931608445408,0,0,0,0 | ||
|short_description=p1@uc007ybi.1 | |short_description=p1@uc007ybi.1 | ||
}} | }} |
Latest revision as of 22:23, 3 August 2015
Short description: | p1@uc007ybi.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc007ybi.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 26bp_to_uc007ybi.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.42e-16 | 15 |
intestinal epithelial cell | 9.15e-16 | 9 |
epithelial cell of alimentary canal | 9.15e-16 | 9 |
epithelial cell | 1.93e-15 | 25 |
brush border epithelial cell | 1.87e-14 | 6 |
gut absorptive cell | 1.87e-14 | 6 |
enterocyte | 1.87e-14 | 6 |
columnar/cuboidal epithelial cell | 2.85e-12 | 7 |
endodermal cell | 7.97e-12 | 20 |
M cell of gut | 3.13e-08 | 3 |
duct epithelial cell | 4.16e-07 | 3 |
epithelial cell of tracheobronchial tree | 4.16e-07 | 3 |
branched duct epithelial cell | 4.16e-07 | 3 |
epithelial cell of lower respiratory tract | 4.16e-07 | 3 |
respiratory epithelial cell | 4.16e-07 | 3 |
tracheal epithelial cell | 4.16e-07 | 3 |
tracheoblast | 4.16e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.98e-37 | 31 |
mucosa | 7.64e-29 | 15 |
intestinal mucosa | 1.13e-24 | 13 |
wall of intestine | 1.13e-24 | 13 |
gastrointestinal system mucosa | 1.13e-24 | 13 |
gastrointestinal system | 1.15e-24 | 47 |
organ component layer | 1.02e-16 | 24 |
epithelium of mucosa | 9.15e-16 | 9 |
gastrointestinal system epithelium | 9.15e-16 | 9 |
intestinal epithelium | 9.15e-16 | 9 |
simple columnar epithelium | 1.25e-12 | 11 |
digestive system | 6.64e-12 | 116 |
digestive tract | 6.64e-12 | 116 |
primitive gut | 6.64e-12 | 116 |
endoderm-derived structure | 1.40e-11 | 118 |
endoderm | 1.40e-11 | 118 |
presumptive endoderm | 1.40e-11 | 118 |
subdivision of digestive tract | 4.28e-10 | 114 |
ileal mucosa | 2.38e-08 | 3 |
ileum | 2.38e-08 | 3 |
mucosa of small intestine | 2.38e-08 | 3 |
wall of small intestine | 2.38e-08 | 3 |
trachea | 4.16e-07 | 3 |
respiratory airway | 4.16e-07 | 3 |
tracheobronchial tree | 4.16e-07 | 3 |
lower respiratory tract | 4.16e-07 | 3 |