FFCP PHASE1:Mm9::chr11:33103600..33103611,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=27140 | |EntrezGene=27140 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=249 | |||
|TSSclassifier=NA | |||
|UniProt=Q5SQB4 | |UniProt=Q5SQB4 | ||
|association_with_transcript=-12bp_to_ENSMUST00000037746,NM_019916,uc007ikg.2_5end | |association_with_transcript=-12bp_to_ENSMUST00000037746,NM_019916,uc007ikg.2_5end | ||
|cluster_id=chr11:33103600..33103611,- | |||
|description=CAGE_peak_2_at_Tlx3_5end | |description=CAGE_peak_2_at_Tlx3_5end | ||
|id=chr11:33103600..33103611,- | |id=chr11:33103600..33103611,- | ||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002612,2.21e-20,3;CL:0000120,2.66e-19,3;CL:0000117,3.75e-17,23;CL:0000337,3.75e-17,23;CL:0002611,6.08e-14,2;CL:0000540,9.88e-12,33;CL:0000047,9.88e-12,33;CL:0000031,9.88e-12,33;CL:0000404,9.88e-12,33;CL:0000393,8.32e-10,39;CL:0000211,8.32e-10,39;CL:0002319,8.09e-09,43;CL:0000221,1.34e-08,44;CL:0000133,1.34e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!3.76e-11!12;UBERON:0003057!3.76e-11!12;UBERON:0002240!3.15e-09!6;UBERON:0005174!3.15e-09!6;UBERON:0001137!3.15e-09!6;UBERON:0001948!3.64e-08!5;UBERON:0002315!3.64e-08!5;UBERON:0004121!1.38e-07!102;UBERON:0000924!1.38e-07!102;UBERON:0006601!1.38e-07!102;UBERON:0000010!3.35e-07!11;UBERON:0000073!6.57e-07!75;UBERON:0001016!6.57e-07!75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,1.20e-32,5;UBERON:0002315,1.20e-32,5;UBERON:0002240,3.16e-27,6;UBERON:0005174,3.16e-27,6;UBERON:0001137,3.16e-27,6;UBERON:0003076,5.45e-26,12;UBERON:0003057,5.45e-26,12;UBERON:0002257,2.21e-20,3;UBERON:0002256,6.08e-14,2;UBERON:0001017,2.26e-09,73;UBERON:0001016,4.35e-09,75;UBERON:0000489,9.46e-08,21;UBERON:0002037,2.57e-07,4;UBERON:0002680,2.57e-07,4;UBERON:0001895,2.57e-07,4;UBERON:0010092,2.57e-07,4;UBERON:0006215,2.57e-07,4;UBERON:0001049,3.63e-07,52;UBERON:0005068,3.63e-07,52;UBERON:0006241,3.63e-07,52;UBERON:0007135,3.63e-07,52;UBERON:0004121,6.88e-07,95;UBERON:0000924,6.88e-07,95;UBERON:0006601,6.88e-07,95;UBERON:0000073,7.19e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82084814773638,1.5869729378161,1.26766280701236,0.338844532069132,0,0,0,0,0,0,0,0,0,1.71390590642282,3.75476519617743,0,0,0,0,0,0,0,0,0,0.279182999001381,0,0,2.35702868378934,3.55929201997757,10.2519695203915,0.075726193333184,0.453429360640713,0,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,1.04091196059682,0.304465478312141,0.230615497256059,0.60289056221049,0.705532242814229,0,0,0,0,0,0,0,0,1.46390398505774,3.56059401582874,0,0,0,0,0.149790639404823,0.457500602818626,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213288250535234,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.820481806145422,0,0,0.315508219416257,0,0.430846795465598,0,0.445597348164788,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0.356737635204141,0.987294123612726,1.2178597964584,0.23467170806371,0,0,0,0,0,0.119372344003136,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299033092087958,0,0,0,0,0,0.13020438484395,0,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0.887943813496259,0.897138566094757,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17953429926771,0.399024873401031,1.19513524027894,0.243106717068294,0.838452650511929,0.367687016900028,0,0.206035057238894,0.64183841918363,0.252697211763798,0,0.188626341386076,0.749132059759059,0.192075457214608,0.229741875822453,0,0.463537303779422,0,0,0.441596760403192,0,0.354951612318675,0,0.145346416632329,0.188218760830661,0.25384382367503,0,0.263069711437843,0.135804113845862,0,0.237270036248348,0.197008964751127,0,0.154936841185966,0.385813221962283,0.249810577937946,0.233931608445408,0,0.191288332068843,0.882365676478062,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82084814773638,1.5869729378161,1.26766280701236,0.338844532069132,0,0,0,0,0,0,0,0,0,1.71390590642282,3.75476519617743,0,0,0,0,0,0,0,0,0,0.279182999001381,0,0,2.35702868378934,3.55929201997757,10.2519695203915,0.075726193333184,0.453429360640713,0,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,1.04091196059682,0.304465478312141,0.230615497256059,0.60289056221049,0.705532242814229,0,0,0,0,0,0,0,0,1.46390398505774,3.56059401582874,0,0,0,0,0.149790639404823,0.457500602818626,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213288250535234,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.820481806145422,0,0,0.315508219416257,0,0.430846795465598,0,0.445597348164788,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0.356737635204141,0.987294123612726,1.2178597964584,0.23467170806371,0,0,0,0,0,0.119372344003136,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299033092087958,0,0,0,0,0,0.13020438484395,0,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0.887943813496259,0.897138566094757,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17953429926771,0.399024873401031,1.19513524027894,0.243106717068294,0.838452650511929,0.367687016900028,0,0.206035057238894,0.64183841918363,0.252697211763798,0,0.188626341386076,0.749132059759059,0.192075457214608,0.229741875822453,0,0.463537303779422,0,0,0.441596760403192,0,0.354951612318675,0,0.145346416632329,0.188218760830661,0.25384382367503,0,0.263069711437843,0.135804113845862,0,0.237270036248348,0.197008964751127,0,0.154936841185966,0.385813221962283,0.249810577937946,0.233931608445408,0,0.191288332068843,0.882365676478062,0 | ||
|short_description=p2@Tlx3 | |short_description=p2@Tlx3 | ||
}} | }} |
Latest revision as of 07:44, 27 September 2015
Short description: | p2@Tlx3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tlx3_5end |
Coexpression cluster: | MCL_coexpression_mm9:249 |
Association with transcript: | -12bp_to_ENSMUST00000037746, NM_019916, uc007ikg.2_5end |
EntrezGene: | Tlx3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 2.21e-20 | 3 |
granule cell | 2.66e-19 | 3 |
CNS neuron (sensu Vertebrata) | 3.75e-17 | 23 |
neuroblast (sensu Vertebrata) | 3.75e-17 | 23 |
neuron of the dorsal spinal cord | 6.08e-14 | 2 |
neuron | 9.88e-12 | 33 |
neuronal stem cell | 9.88e-12 | 33 |
neuroblast | 9.88e-12 | 33 |
electrically signaling cell | 9.88e-12 | 33 |
electrically responsive cell | 8.32e-10 | 39 |
electrically active cell | 8.32e-10 | 39 |
neural cell | 8.09e-09 | 43 |
ectodermal cell | 1.34e-08 | 44 |
neurectodermal cell | 1.34e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 1.20e-32 | 5 |
gray matter of spinal cord | 1.20e-32 | 5 |
spinal cord | 3.16e-27 | 6 |
dorsal region element | 3.16e-27 | 6 |
dorsum | 3.16e-27 | 6 |
posterior neural tube | 5.45e-26 | 12 |
chordal neural plate | 5.45e-26 | 12 |
ventral horn of spinal cord | 2.21e-20 | 3 |
dorsal horn of spinal cord | 6.08e-14 | 2 |
central nervous system | 2.26e-09 | 73 |
nervous system | 4.35e-09 | 75 |
cavitated compound organ | 9.46e-08 | 21 |
cerebellum | 2.57e-07 | 4 |
regional part of metencephalon | 2.57e-07 | 4 |
metencephalon | 2.57e-07 | 4 |
future metencephalon | 2.57e-07 | 4 |
rhombic lip | 2.57e-07 | 4 |
neural tube | 3.63e-07 | 52 |
neural rod | 3.63e-07 | 52 |
future spinal cord | 3.63e-07 | 52 |
neural keel | 3.63e-07 | 52 |
ectoderm-derived structure | 6.88e-07 | 95 |
ectoderm | 6.88e-07 | 95 |
presumptive ectoderm | 6.88e-07 | 95 |
regional part of nervous system | 7.19e-07 | 54 |