FFCP PHASE1:Mm9::chr10:116333731..116333741,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=237558 | |EntrezGene=237558 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=58 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UN70 | |UniProt=Q3UN70 | ||
|association_with_transcript=193bp_to_ENSMUST00000048229,NM_001033333,uc007hci.1_5end | |association_with_transcript=193bp_to_ENSMUST00000048229,NM_001033333,uc007hci.1_5end | ||
|cluster_id=chr10:116333731..116333741,- | |||
|description=CAGE_peak_4_at_Gm239_5end | |description=CAGE_peak_4_at_Gm239_5end | ||
|id=chr10:116333731..116333741,- | |id=chr10:116333731..116333741,- | ||
|ontology_enrichment_celltype=CL:0002563!4.29e-20!9;CL:0002251!4.29e-20!9;CL:0000239!1.18e-12!6;CL:0000677!1.18e-12!6;CL:0000212!1.18e-12!6;CL:0000584!1.18e-12!6;CL:0000066!2.14e-12!25;CL:0002076!1.68e-11!15;CL:0000075!8.61e-11!7;CL:0000473!7.09e-10!3;CL:0000627!7.09e-10!3;CL:0000682!7.09e-10!3;CL:0002250!4.07e-09!3;CL:0000223!2.79e-08!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.31e-30,6;CL:0000677,1.31e-30,6;CL:0000584,1.31e-30,6;CL:0002563,6.99e-29,9;CL:0002251,6.99e-29,9;CL:0000075,2.89e-26,7;CL:0000066,5.25e-23,25;CL:0000682,7.86e-23,3;CL:0002076,2.70e-17,15;CL:0000223,6.25e-13,20;CL:0000473,3.75e-10,7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.73e-35!15;UBERON:0001242!5.32e-30!13;UBERON:0000060!5.32e-30!13;UBERON:0001262!5.32e-30!13;UBERON:0004786!5.32e-30!13;UBERON:0000160!1.51e-29!43;UBERON:0004923!5.33e-21!24;UBERON:0005409!3.52e-20!59;UBERON:0003350!4.29e-20!9;UBERON:0004808!4.29e-20!9;UBERON:0001277!4.29e-20!9;UBERON:0000485!3.45e-16!11;UBERON:0000331!6.32e-09!3;UBERON:0002116!6.32e-09!3;UBERON:0001204!6.32e-09!3;UBERON:0001168!6.32e-09!3;UBERON:0001007!1.74e-08!128;UBERON:0001555!1.74e-08!128;UBERON:0007026!1.74e-08!128;UBERON:0004119!2.85e-08!130;UBERON:0000925!2.85e-08!130;UBERON:0006595!2.85e-08!130;UBERON:0001962!5.49e-07!2;UBERON:0001961!5.49e-07!2;UBERON:0001744!5.49e-07!2;UBERON:0004921!8.27e-07!126;UBERON:0004185!8.27e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.04e-38,15;UBERON:0003350,6.99e-29,9;UBERON:0004808,6.99e-29,9;UBERON:0001277,6.99e-29,9;UBERON:0001242,2.93e-27,13;UBERON:0001262,2.93e-27,13;UBERON:0004786,2.93e-27,13;UBERON:0004923,5.46e-24,24;UBERON:0000485,1.27e-23,11;UBERON:0001962,1.89e-15,2;UBERON:0001961,1.89e-15,2;UBERON:0001744,1.89e-15,2;UBERON:0000160,3.19e-11,31;UBERON:0002465,1.27e-10,3;UBERON:0003199,2.06e-08,1;UBERON:0005409,3.08e-07,47 | |||
|phase1_expression=0,1.74487703819681,3.18499467572675,1.81478526784098,0,1.6787927191189,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23989391910769,1.37645568640302,3.44539178469012,1.29228598847722,2.80112602491656,0.190023419456374,0.252030129759931,3.54768817048488,0,0,0,0.577703239502549,0.664938581433969,1.02084678131185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,0.528901133327089,0,0,0,0.403367049246685,0.22237804384487,0.190225626112559,0.474529061544512,0.164698954724011,0,0.198956472041151,0,0,0.216138049874694,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874442509889552,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347652977834566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,1.74487703819681,3.18499467572675,1.81478526784098,0,1.6787927191189,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23989391910769,1.37645568640302,3.44539178469012,1.29228598847722,2.80112602491656,0.190023419456374,0.252030129759931,3.54768817048488,0,0,0,0.577703239502549,0.664938581433969,1.02084678131185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,0.528901133327089,0,0,0,0.403367049246685,0.22237804384487,0.190225626112559,0.474529061544512,0.164698954724011,0,0.198956472041151,0,0,0.216138049874694,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874442509889552,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347652977834566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@Gm239 | |short_description=p4@Gm239 | ||
}} | }} |
Latest revision as of 15:19, 25 September 2015
Short description: | p4@Gm239 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gm239_5end |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | 193bp_to_ENSMUST00000048229, NM_001033333, uc007hci.1_5end |
EntrezGene: | Gm239 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.31e-30 | 6 |
gut absorptive cell | 1.31e-30 | 6 |
enterocyte | 1.31e-30 | 6 |
intestinal epithelial cell | 6.99e-29 | 9 |
epithelial cell of alimentary canal | 6.99e-29 | 9 |
columnar/cuboidal epithelial cell | 2.89e-26 | 7 |
epithelial cell | 5.25e-23 | 25 |
M cell of gut | 7.86e-23 | 3 |
endo-epithelial cell | 2.70e-17 | 15 |
endodermal cell | 6.25e-13 | 20 |
defensive cell | 3.75e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.04e-38 | 15 |
epithelium of mucosa | 6.99e-29 | 9 |
gastrointestinal system epithelium | 6.99e-29 | 9 |
intestinal epithelium | 6.99e-29 | 9 |
intestinal mucosa | 2.93e-27 | 13 |
wall of intestine | 2.93e-27 | 13 |
gastrointestinal system mucosa | 2.93e-27 | 13 |
organ component layer | 5.46e-24 | 24 |
simple columnar epithelium | 1.27e-23 | 11 |
gut-associated lymphoid tissue | 1.89e-15 | 2 |
mucosa-associated lymphoid tissue | 1.89e-15 | 2 |
lymphoid tissue | 1.89e-15 | 2 |
intestine | 3.19e-11 | 31 |
lymphoid system | 1.27e-10 | 3 |
egg chamber | 2.06e-08 | 1 |
gastrointestinal system | 3.08e-07 | 47 |