FFCP PHASE1:Hg19::chr7:27205136..27205164,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:27205136..27205164,- to FFCP PHASE1:Hg19::chr7:27205136..27205164,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3205 | |EntrezGene=3205 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5109 | |HGNC=5109 | ||
|TSSclassifier=strong | |||
|UniProt=A8MVF3,P31269 | |UniProt=A8MVF3,P31269 | ||
|association_with_transcript=0bp_to_ENST00000396345,NM_152739,uc003syt.2_5end | |||
|cluster_id=chr7:27205136..27205164,- | |||
|coexpression_cluster_id=C4681 | |||
|description=CAGE_peak_1_at_HOXA9_5end | |||
|id=chr7:27205136..27205164,- | |||
|ontology_enrichment_celltype=CL:1000497!3.78e-10!18;CL:0002518!3.78e-10!18;CL:1000449!9.71e-09!16;CL:1000507!2.12e-08!12;CL:1000494!2.12e-08!12;CL:0000035!5.41e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:1000497;5.66e-12;17!CL:0002518;5.66e-12;17!CL:1000449;2.67e-10;15!CL:1000507;1.01e-09;10!CL:1000494;1.01e-09;10!CL:0002681;7.93e-08;12!CL:0002584;7.93e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,5.51e-12,17;CL:0002518,5.51e-12,17;CL:1000449,2.60e-10,15;CL:1000507,1.00e-09,10;CL:1000494,1.00e-09,10;CL:0002681,7.72e-08,12;CL:0002584,7.72e-08,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;4.57e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.23e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0001008!1.01e-18!45;UBERON:0006554!2.74e-18!44;UBERON:0000489!5.41e-14!32;UBERON:0002113!2.09e-12!27;UBERON:0003918!2.09e-12!27;UBERON:0005095!2.09e-12!27;UBERON:0007687!2.09e-12!27;UBERON:0003064!2.07e-11!37;UBERON:0000080!1.68e-09!18;UBERON:0002120!1.68e-09!18;UBERON:0004875!1.68e-09!18;UBERON:0005721!1.68e-09!18;UBERON:0005754!1.68e-09!18;UBERON:0007297!1.68e-09!18;UBERON:0006555!2.57e-09!17;UBERON:0005103!2.57e-09!17;UBERON:0000083!2.57e-09!17;UBERON:0009201!2.57e-09!17;UBERON:0004819!2.57e-09!17;UBERON:0006553!2.57e-09!17;UBERON:0003074!2.57e-09!17;UBERON:0003060!2.57e-09!17;UBERON:0004876!4.33e-09!20;UBERON:0004211!9.71e-09!16;UBERON:0001285!9.71e-09!16;UBERON:0007684!9.71e-09!16;UBERON:0003220!9.71e-09!16;UBERON:0004208!9.71e-09!16;UBERON:0003887!1.67e-08!21;UBERON:0009773!2.12e-08!12;UBERON:0001231!2.12e-08!12;UBERON:0004810!2.12e-08!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;3.21e-17;30!UBERON:0001008;3.21e-17;30!UBERON:0000489;3.90e-14;29!UBERON:0002113;6.08e-14;24!UBERON:0011143;6.08e-14;24!UBERON:0006555;2.67e-10;15!UBERON:0004819;2.67e-10;15!UBERON:0001285;2.67e-10;15!UBERON:0007684;2.67e-10;15!UBERON:0004211;1.01e-09;10!UBERON:0009773;1.01e-09;10!UBERON:0001231;1.01e-09;10!UBERON:0004810;1.01e-09;10!UBERON:0001225;7.93e-08;12!UBERON:0008987;7.93e-08;12!UBERON:0004765;2.74e-07;26 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001008,4.06e-19,48;UBERON:0006554,1.28e-18,47;UBERON:0000489,4.76e-15,31;UBERON:0002113,7.54e-15,26;UBERON:0003918,7.54e-15,26;UBERON:0011143,7.54e-15,26;UBERON:0005095,7.54e-15,26;UBERON:0007687,7.54e-15,26;UBERON:0006555,5.41e-11,16;UBERON:0004819,5.41e-11,16;UBERON:0004211,2.60e-10,15;UBERON:0009773,2.60e-10,15;UBERON:0001231,2.60e-10,15;UBERON:0001285,2.60e-10,15;UBERON:0007684,2.60e-10,15;UBERON:0004208,2.60e-10,15;UBERON:0004810,1.00e-09,10;UBERON:0003064,2.21e-08,28;UBERON:0003104,4.79e-08,160;UBERON:0009142,4.79e-08,160;UBERON:0001225,7.72e-08,12;UBERON:0008987,7.72e-08,12;UBERON:0001046,1.30e-07,19;UBERON:0000162,6.42e-07,14;UBERON:0001353,6.42e-07,14;UBERON:0000163,6.42e-07,14;UBERON:0006866,6.42e-07,14;UBERON:0000164,6.42e-07,14;UBERON:0000931,6.42e-07,14;UBERON:0002199,7.52e-07,46;UBERON:0002416,7.52e-07,46 | |||
|phase1_expression=4.90531624030503,7.27941781229343,0.281908808191942,4.00293193412522,0,8.72338524100369,10.1319951267324,3.79031924056099,4.44015567939725,0,0,0,0,23.3918407094488,18.8896504164912,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0.383829398097213,0.77408061658038,0,0,0,0,0,16.1480241634166,0.553995408531877,0,0,0,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0.639337125799041,0,0,0,0,0,0.622822248995575,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0.150176892841506,0,0.285012743741249,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,27.7559790015954,8.96813700770458,11.3255156453283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0.318565414324097,0,0.950452044448374,0.150575119077773,0,1.24930726552346,0,0,0,0,0,0,0,0,4.69870898099936,3.50936537445123,11.7325680358267,7.15757352345989,3.89307896242109,0,0,0,6.35248516163906,0,0,0.649094787309367,0.174129737299267,0,0.953962497221368,0.571994910780128,0.74291500265913,0,0,0.347140501607594,0,0,0,1.04497483268405,4.39308490587859,4.62496141492723,5.35552980423472,3.22263453687318,2.28081631715554,5.36936526605973,2.94130464276695,17.012980905517,25.718321745815,22.0038785173646,19.932232045548,10.7321646226118,11.3911879148175,8.79368370865955,0,0,0,5.4666914686485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.78235777765763,8.80758739828237,3.39933183173076,3.23036855415172,0,0,0,0,0,13.6524204290704,11.4978902690598,0,0,0,0,0,0,0.113432183160021,6.99619579186562,9.61008249683553,8.68920794754204,8.10245959427886,7.21367704669072,5.66809188100384,5.3973888336161,7.59493495085698,6.04109431999431,6.05841058185875,12.7028860126373,0,13.845374108148,10.1759619209917,4.23901480776219,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,1.77236972004421,0,12.7907976084838,0,0.329250856225877,1.1240175325762,16.7883383927424,0,0,0,0,0,0,4.90845922387651,1.85194205030644,3.80508304469197,0,0,0,0,0,0,0,0,7.16468181622786,0,0,0,0,0,0.144119953416961,0.25248486685276,2.15892840593375,4.58386110669933,1.17217447210047,5.13217338068116,1.64523988325318,5.40617504119051,0,0,0.43596006883328,0,3.87815147273333,0,2.535908257668,7.1803291477915,8.32059495290929,27.0067742975249,2.83698264046557,30.3721284078353,0,6.51145926469732,13.9950857252731,4.88604276440603,0,9.50342247520115,1.20575750823834,2.61460037580088,0.099972991182057,0,0,0,0,0,0,3.04040744001916,3.6985738059069,1.43248770591916,13.8985578551974,0.197030760201927,0,0.256686072559497,0,0,0,0,0,0,0,0,17.2995003323987,21.0071618845064,18.446021611582,0,0,0,0,10.5331134904702,9.09630016223939,12.4167685551006,9.96338397803155,5.34670588770939,3.12781012085098,0,0.343143423810856,0.413536052245775,0.431428401637234,0.106727557803444,0,0,0.604780586659361,8.93188108147597,2.76231551918512,8.70046292742528,0.128139149255701,5.11707249066703,0.321707842287215,1.48418066444991,5.5515489768956,6.21466038595945,6.07740954502188,0,7.78609535681727,6.28469137876436,5.61418116849198,16.022092074846,5.39627906373652,8.5582848963157,6.16284750309293,13.9871880001298,17.0974048371801,32.1583405362511,32.1506294237174,27.4434235121477,5.68666920354483,4.59253004246592,17.2732732881711,12.3381802152231,36.3068226308763,34.6165943959849,22.6839883010084,22.4390522410756,43.4317024161026,0.219259876645935,0.261435451024901,0,0,0,2.16386124460217,12.8197250745681,11.6338394888029,1.72279661398852,1.30012049207304,0,14.5972784621104,0.616194468458578,1.68854042198743,2.89456802217514,10.204923262486,8.84601832876794,6.90335682070417,3.56128142586949,0,0,0,0,0,0,0,9.54904098545875,0,0,0,0,0,0.949138274156178,0,0.767693373934002,0.42793898803392,0,0,10.6124749974156,10.7069441597061,9.18936738296354,0,0,0,0,3.1682753652067,0,3.95849743083159,8.48432591722277,0,0,0,0,0.578775534266688,0.655894752046633,2.63783490051515,4.957175969596,2.81695602532241,8.74809248444714,5.69844437876103,2.49669736036875,4.61189383291777,4.01104507065562,3.29294892959902,0,0,0,0.670302275535787,0,2.07116361708914,9.47111819876706,10.1082885400575,11.0857538384169,6.89170200620878,0,0,0.569647187174163,0.476463550915578,0,0,0,0,13.0325366775517,0,0,0,0,0,0,72.6468912015452,136.160318164113,40.2179807175377,0,33.4148641955016,28.7575695581822,0,37.5951715635101,74.8269657883087,40.9499591514434,23.2069663269705,89.0018636772782,53.2433284371435,18.127205094199,22.8149630050264,19.8550478637171,26.3773928792754,2.22724939116194,0,0,0,2.81974010175699,0.18714054040822,1.75809815126273,0,0,9.66062899141805,0,0.593929361665277,0,0,0.140669416410513,0,0,0,2.19172787076177,5.52567831062295,0,0,0,0,0,0,38.8795001372423,9.46976694114563,0,6.66821940867821,0,0,0,0,0,7.97499532978273,0,0,0,0.344743373241465,0,25.0019992703941,0,0,0,0,0,0,0,12.4087132407957,14.1588475646987,0,0,0,0,1.27600463892768,7.69419784575643,0,0,0,1.82832850090172,0,0,0,0,15.098975003136,0,102.183737907626,3.53382678584852,0,25.8768102080411,11.0571955629174,1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| 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| ||
|short_description=p1@HOXA9 | |||
}} | }} |
Latest revision as of 01:42, 18 September 2015
Short description: | p1@HOXA9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXA9_5end |
Coexpression cluster: | C4681_smallcell_acute_small_clear_renal_endometrioid_embryonic |
Association with transcript: | 0bp_to_ENST00000396345, NM_152739, uc003syt.2_5end |
EntrezGene: | HOXA9 |
HGNC: | 5109 |
UniProt: | A8MVF3P31269 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 5.51e-12 | 17 |
kidney epithelial cell | 5.51e-12 | 17 |
epithelial cell of nephron | 2.60e-10 | 15 |
kidney tubule cell | 1.00e-09 | 10 |
nephron tubule epithelial cell | 1.00e-09 | 10 |
kidney cortical cell | 7.72e-08 | 12 |
renal cortical epithelial cell | 7.72e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
renal system | 4.06e-19 | 48 |
urinary system structure | 1.28e-18 | 47 |
cavitated compound organ | 4.76e-15 | 31 |
kidney | 7.54e-15 | 26 |
kidney mesenchyme | 7.54e-15 | 26 |
upper urinary tract | 7.54e-15 | 26 |
kidney rudiment | 7.54e-15 | 26 |
kidney field | 7.54e-15 | 26 |
excretory tube | 5.41e-11 | 16 |
kidney epithelium | 5.41e-11 | 16 |
nephron epithelium | 2.60e-10 | 15 |
renal tubule | 2.60e-10 | 15 |
nephron tubule | 2.60e-10 | 15 |
nephron | 2.60e-10 | 15 |
uriniferous tubule | 2.60e-10 | 15 |
nephrogenic mesenchyme | 2.60e-10 | 15 |
nephron tubule epithelium | 1.00e-09 | 10 |
intermediate mesoderm | 2.21e-08 | 28 |
mesenchyme | 4.79e-08 | 160 |
entire embryonic mesenchyme | 4.79e-08 | 160 |
cortex of kidney | 7.72e-08 | 12 |
renal parenchyma | 7.72e-08 | 12 |
hindgut | 1.30e-07 | 19 |
cloaca | 6.42e-07 | 14 |
anal region | 6.42e-07 | 14 |
embryonic cloaca | 6.42e-07 | 14 |
terminal part of digestive tract | 6.42e-07 | 14 |
primitive urogenital sinus | 6.42e-07 | 14 |
proctodeum | 6.42e-07 | 14 |
integument | 7.52e-07 | 46 |
integumental system | 7.52e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.23e-08 | 31 |