FFCP PHASE1:Hg19::chr5:98105021..98105033,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:98105021..98105033,+ to FFCP PHASE1:Hg19::chr5:98105021..98105033,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=285704 | |EntrezGene=285704 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26896 | |HGNC=26896 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NW40 | |UniProt=Q6NW40 | ||
|association_with_transcript=22bp_to_ENST00000308234,NM_001012761,uc003knb.2,uc003knc.2_5end | |||
|cluster_id=chr5:98105021..98105033,+ | |||
|coexpression_cluster_id=C952 | |||
|description=CAGE_peak_11_at_RGMB_5end | |||
|id=chr5:98105021..98105033,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.26e-25!180;CL:0000057!3.90e-18!75;CL:0002620!1.92e-15!23;CL:0000680!2.14e-14!57;CL:0000056!2.14e-14!57;CL:0000355!2.14e-14!57;CL:0000187!6.40e-13!54;CL:0000222!1.34e-12!119;CL:0000183!1.61e-12!59;CL:0000359!2.40e-11!32;CL:0000393!3.38e-11!60;CL:0000211!3.38e-11!60;CL:0000192!8.50e-11!42;CL:0000514!8.50e-11!42;CL:0000220!1.46e-09!246;CL:0002321!1.83e-09!248 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.59e-23;23!CL:0000359;3.88e-13;32!CL:0000192;9.07e-10;43!CL:0002559;4.26e-09;5!CL:0000057;7.43e-09;73!CL:0000723;1.51e-08;61!CL:0000134;1.79e-07;55!CL:0000187;2.42e-07;55!CL:0000048;2.65e-07;58!CL:0002540;6.89e-07;6!CL:0002556;7.39e-07;6!CL:0002320;8.82e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,8.26e-24,23;CL:0000057,6.40e-21,76;CL:0000680,1.93e-14,58;CL:0000056,1.93e-14,58;CL:0000355,1.93e-14,58;CL:0000359,6.46e-14,32;CL:0000187,5.82e-13,55;CL:0000192,1.63e-12,43;CL:0000514,1.63e-12,43;CL:0000048,4.51e-12,427;CL:0000723,4.67e-12,433;CL:0000034,2.21e-11,441;CL:0000393,5.91e-11,61;CL:0000211,5.91e-11,61;CL:0002559,2.83e-09,5;CL:0000222,3.72e-09,121;CL:0002540,4.40e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000514;9.07e-10;43!CL:0000355;1.64e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.53e-08;5!DOID:450;1.53e-08;5!DOID:66;1.53e-08;5!DOID:423;1.53e-08;5!DOID:0080000;1.53e-08;5!DOID:11722;1.53e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.51e-08,5;DOID:450,2.51e-08,5;DOID:66,2.51e-08,5;DOID:423,2.51e-08,5;DOID:0080000,2.51e-08,5;DOID:11722,2.51e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.26e-19!83;UBERON:0002329!3.26e-19!83;UBERON:0003077!3.26e-19!83;UBERON:0003059!3.26e-19!83;UBERON:0007282!3.26e-19!83;UBERON:0009618!3.26e-19!83;UBERON:0007285!3.26e-19!83;UBERON:0004290!2.86e-18!70;UBERON:0002199!1.19e-16!45;UBERON:0002416!1.19e-16!45;UBERON:0002097!2.01e-16!40;UBERON:0000486!7.19e-16!82;UBERON:0001637!1.53e-14!42;UBERON:0003509!1.53e-14!42;UBERON:0004572!1.53e-14!42;UBERON:0003102!2.28e-13!95;UBERON:0001134!3.21e-13!61;UBERON:0002036!3.21e-13!61;UBERON:0003082!3.21e-13!61;UBERON:0000475!3.83e-13!365;UBERON:0002385!3.98e-13!63;UBERON:0001015!3.98e-13!63;UBERON:0000383!3.98e-13!63;UBERON:0004573!7.57e-12!33;UBERON:0004571!7.57e-12!33;UBERON:0001981!4.69e-11!60;UBERON:0007500!4.69e-11!60;UBERON:0004537!4.69e-11!60;UBERON:0006965!4.69e-11!60;UBERON:0002049!3.04e-10!79;UBERON:0007798!3.04e-10!79;UBERON:0000055!3.63e-10!69;UBERON:0005256!1.22e-09!143;UBERON:0000119!8.87e-09!312;UBERON:0000483!1.29e-08!309;UBERON:0000490!6.42e-08!138;UBERON:0000481!8.35e-08!347;UBERON:0004872!1.01e-07!84;UBERON:0002067!1.90e-07!9;UBERON:0004016!1.90e-07!9;UBERON:0010083!1.90e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.95e-18;41!UBERON:0002199;4.52e-16;46!UBERON:0002416;4.52e-16;46!UBERON:0003102;7.55e-15;50!UBERON:0004573;2.10e-13;33!UBERON:0004571;2.10e-13;33!UBERON:0001637;3.80e-11;42!UBERON:0003509;3.80e-11;42!UBERON:0004572;3.80e-11;42!UBERON:0002067;3.94e-11;9!UBERON:0002073;4.26e-09;5!UBERON:0007500;1.59e-07;56!UBERON:0001981;1.59e-07;56!UBERON:0004537;1.59e-07;56!UBERON:0000947;5.76e-07;21!UBERON:0010191;5.76e-07;21!UBERON:0001758;7.39e-07;6!UBERON:0003672;7.39e-07;6!UBERON:0002384;8.02e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.33e-26,46;UBERON:0002416,2.33e-26,46;UBERON:0002097,1.51e-24,41;UBERON:0007524,9.74e-22,73;UBERON:0002329,1.93e-21,71;UBERON:0003059,1.93e-21,71;UBERON:0007282,1.93e-21,71;UBERON:0004290,1.93e-21,71;UBERON:0009618,1.93e-21,71;UBERON:0003077,5.57e-21,72;UBERON:0007285,5.57e-21,72;UBERON:0007503,1.75e-18,78;UBERON:0003102,6.01e-17,99;UBERON:0000486,1.08e-16,83;UBERON:0001637,5.79e-16,42;UBERON:0003509,5.79e-16,42;UBERON:0004572,5.79e-16,42;UBERON:0004573,1.49e-14,33;UBERON:0004571,1.49e-14,33;UBERON:0002385,2.38e-14,64;UBERON:0001015,2.38e-14,64;UBERON:0000383,2.38e-14,64;UBERON:0001134,4.96e-14,62;UBERON:0002036,4.96e-14,62;UBERON:0003082,4.96e-14,62;UBERON:0000490,5.46e-12,148;UBERON:0005256,1.50e-11,122;UBERON:0007500,1.75e-11,59;UBERON:0001981,1.75e-11,59;UBERON:0004537,1.75e-11,59;UBERON:0006965,1.75e-11,59;UBERON:0002067,1.84e-11,9;UBERON:0004016,1.84e-11,9;UBERON:0010083,1.84e-11,9;UBERON:0002073,2.83e-09,5;UBERON:0005086,2.83e-09,5;UBERON:0004872,3.92e-09,83;UBERON:0000055,5.10e-09,68;UBERON:0002049,8.44e-08,78;UBERON:0007798,8.44e-08,78;UBERON:0003104,3.12e-07,160;UBERON:0009142,3.12e-07,160;UBERON:0000947,4.82e-07,21;UBERON:0010191,4.82e-07,21 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,1.26343974685366,0,0.737201809504527,0,0,0,0,0.331397375727916,0,0,0.730310090387373,1.46379839637152,0.123121058076788,0,0,0.286235987131057,0.547497700291537,0,0,0,0,0,0,0,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24930726552346,0,0,0,0,0,0,0,0,0.722878304769133,1.00267582127178,0.144846518960824,0,0,0.189069634328136,0,0.087834785693126,0,0,0,0,0,0,0,0,0,1.19257444420023,2.58070378531837,0.347140501607594,1.13061588384802,0,0.550236083880135,0.835979866147242,0.258416759169329,0,0.33472061276467,0.402829317109147,0,0,0.735326160691737,1.62028389576352,0.267899184852239,0,0.112611480483322,0,0,1.46561395144326,0,0,0,0.993943903390637,0.379891534993739,3.70745706277013,0.286836620748814,0,0.560677600142307,0,0.49333509683432,0,0,0,0.454072282934794,0,2.10889288650417,0.624320153660641,1.71141546463335,1.64393548606981,3.17073146338165,1.78060238804945,2.10676210053373,1.02077085627447,0.982674538494144,0.516628905878827,2.37600571456411,0.989067717114227,0,0.718618141816238,0.673344455816265,1.12606667884768,2.21651292387346,2.19488810440419,2.45190236639216,2.55404700141215,0.113432183160021,5.56107870635472,1.06778694409284,1.27159140695737,6.00182192168805,2.47326070172253,2.57640540045629,1.48893485065272,3.54430297706659,1.55899208257918,5.04867548488229,0.460249493211497,1.45481451136931,7.10019185033229,4.03008392910561,1.86516651541536,0,0,0.860413786167011,0,0.132529768321485,0.232387885739037,0,0,0,7.8224766164908,3.85944562915731,5.52539685409922,1.85747171212792,2.16563844500876,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0,0,0,0,0,0,0,0.171567810298526,0,0,0.402115889646523,0.277765335475589,0.977424915930974,2.07986957055916,0,1.15930404975077,0.352226082707465,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.190493682876507,0.763976851116555,1.17217447210047,0,0.514137463516618,0,0.571652865261156,0.784917590417525,0,0.22001485746285,0.904902010304444,0,1.690605505112,0.26593811658487,1.04007436911366,0.514414748524284,4.25547396069835,1.8649552531127,0.142977993658148,1.08524321078289,0,0.977208552881205,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0.958499421966331,0,4.27910715122155,2.02693829334611,0.61642896765115,3.58121926479791,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0.813795071099207,0.415941723061614,2.14114786556594,0.946214490203608,2.22568688486155,0.601892199455438,0,0,0,0.553107505625109,2.69339204851057,0.195801157462741,0.686286847621712,0,0,0,0,0,0,0,0,0.561320188866147,0.128139149255701,0,0.160853921143607,0,3.70103265126373,1.59805552781814,1.39616165223476,1.03850885836724,2.44041794765914,0,0.200506470303285,0,0,1.63882051206045,0.262248829918848,0.451199612907412,0.385076685522074,0,0,0,0,0.510281115829547,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,2.87132768998086,0.650060246036521,1.6068392984416,0.96670718292122,1.23238893691716,0.921022048356777,4.41077031950498,0.644521469209642,0.725083469571143,1.70453254832202,0.267096106940212,0,0.192190067365106,0.127612712494584,0,0.929691098594572,4.40737285562896,1.3940745403212,2.7723022215848,2.66153015158511,2.60979897622522,1.8532421910392,1.00187420719394,0,0,0.190630193923825,1.27948895655667,0.42793898803392,4.13664222303718,3.92474320099615,0,0,0.117812402345686,1.41527737101321,0,2.10629228119491,0.48763373908959,2.92456187557541,2.11300293513511,0.409499734223957,0,2.26016233240486,0.551365343546124,0.66343897524122,3.06915619677634,1.73632660280006,0,1.42037263873893,3.40805847909725,3.09865162785466,0.717056761020258,0.0982490410131212,0.7133421029625,1.77380532035299,0.422215270595328,0.658589785919804,0.379473173765715,2.44954304171488,0.288666338176536,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,1.11308705022906,0,0,0,0.276283915531148,0,0,0,9.95326680517784,1.16828856491525,0,0,0.0986434056369336,0,1.11136990144637,0,0.371072392647405,0,0,0,0,0,0,0,0.344743373241465,0,0.694499979733169,0,0,0,0.110579259931225,0,0.438770794307945,0,0,0,0.113942055847001,0,0,0.108647371922008,0,1.83195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0.995261931078505,1.23840590304675,3.05515072466813,0,0,0,0.404406797884062,0,0.234264445725339,0,0,0.242780379534093,0,0,0.91821828489147,0.063186579628488,0,0,1.99396161812156,2.64793564700399,0.627865836814451,2.38944859545918,0,2.21879476821022,0.173559738335131,0,0,0,0.687944129886466,0,0,0,0.0969890164884194,0,0.225980740780532,0.137041924646751,0,0.126621591911757,0,0.881747022766871,0,0,0.144090417154106,0,0.171594997861965,0.288109595976299,0.869767748958028,0,0.271808412147228,0.209205692624666,0,0,0,0.136905378891993,0,1.28929632425987,0,0,0,0,0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| ||
|short_description=p11@RGMB | |||
}} | }} |
Latest revision as of 10:21, 19 September 2015
Short description: | p11@RGMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_RGMB_5end |
Coexpression cluster: | C952_basal_Fibroblast_tenocyte_Hair_Smooth_Preadipocyte_Myoblast |
Association with transcript: | 22bp_to_ENST00000308234, NM_001012761, uc003knb.2, uc003knc.2_5end |
EntrezGene: | RGMB |
HGNC: | 26896 |
UniProt: | Q6NW40 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 8.26e-24 | 23 |
fibroblast | 6.40e-21 | 76 |
muscle precursor cell | 1.93e-14 | 58 |
myoblast | 1.93e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.93e-14 | 58 |
vascular associated smooth muscle cell | 6.46e-14 | 32 |
muscle cell | 5.82e-13 | 55 |
smooth muscle cell | 1.63e-12 | 43 |
smooth muscle myoblast | 1.63e-12 | 43 |
multi fate stem cell | 4.51e-12 | 427 |
somatic stem cell | 4.67e-12 | 433 |
stem cell | 2.21e-11 | 441 |
electrically responsive cell | 5.91e-11 | 61 |
electrically active cell | 5.91e-11 | 61 |
hair follicle cell | 2.83e-09 | 5 |
mesodermal cell | 3.72e-09 | 121 |
mesenchymal stem cell of the bone marrow | 4.40e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.51e-08 | 5 |
myotonic disease | 2.51e-08 | 5 |
muscle tissue disease | 2.51e-08 | 5 |
myopathy | 2.51e-08 | 5 |
muscular disease | 2.51e-08 | 5 |
myotonic dystrophy | 2.51e-08 | 5 |