FFCP PHASE1:Hg19::chr5:140887761..140887777,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:140887761..140887777,+ to FFCP PHASE1:Hg19::chr5:140887761..140887777,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:140887761..140887777,+ | |||
|description=CAGE_peak_at_chr5:140887761..140887777,+ | |||
|id=chr5:140887761..140887777,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.75e-16!180;CL:0000057!8.37e-10!75;CL:0000183!2.31e-08!59;CL:0000680!8.16e-08!57;CL:0000056!8.16e-08!57;CL:0000355!8.16e-08!57;CL:0000187!8.28e-08!54;CL:0000327!1.28e-07!14;CL:0000393!2.89e-07!60;CL:0000211!2.89e-07!60;CL:0000499!8.03e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002564;3.61e-24;3!CL:0000153;2.54e-21;9!CL:0000447;2.54e-21;9!CL:0002602;1.73e-16;2!CL:0000499;7.59e-13;28!CL:0000327;9.54e-13;15!CL:0000138;5.16e-12;6!CL:0000135;1.34e-11;3!CL:0000388;1.34e-11;3!CL:0000214;1.65e-11;3!CL:0000228;7.26e-09;1!CL:0000222;7.26e-09;1!CL:0002372;7.26e-09;1!CL:0002552;4.04e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,4.58e-24,3;CL:0000153,1.89e-21,9;CL:0000447,1.89e-21,9;CL:0002602,1.27e-16,2;CL:0000499,6.92e-13,28;CL:0000327,8.02e-13,15;CL:0000058,4.27e-12,6;CL:0000138,4.27e-12,6;CL:0000135,1.49e-11,3;CL:0000214,1.49e-11,3;CL:0000388,1.49e-11,3;CL:0000228,6.72e-09,1;CL:0002372,6.72e-09,1;CL:0000151,3.04e-07,36;CL:0002552,3.36e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.69e-09!83;UBERON:0002329!1.69e-09!83;UBERON:0003077!1.69e-09!83;UBERON:0003059!1.69e-09!83;UBERON:0007282!1.69e-09!83;UBERON:0009618!1.69e-09!83;UBERON:0007285!1.69e-09!83;UBERON:0002385!6.55e-08!63;UBERON:0001015!6.55e-08!63;UBERON:0000383!6.55e-08!63;UBERON:0001135!1.15e-07!15;UBERON:0004290!2.69e-07!70;UBERON:0001134!6.74e-07!61;UBERON:0002036!6.74e-07!61;UBERON:0003082!6.74e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;4.90e-47;8!UBERON:0000982;4.90e-47;8!UBERON:0004770;4.90e-47;8!UBERON:0011135;7.75e-39;5!UBERON:0002216;7.75e-39;5!UBERON:0011134;7.75e-39;5!UBERON:0002209;7.75e-39;5!UBERON:0002213;7.75e-39;5!UBERON:0007844;7.75e-39;5!UBERON:0011138;7.75e-39;5!UBERON:0001130;7.75e-39;5!UBERON:0001066;7.75e-39;5!UBERON:0001468;7.75e-39;5!UBERON:0002242;3.61e-24;3!UBERON:0006444;1.73e-16;2!UBERON:0001995;1.73e-16;2!UBERON:0004715;1.73e-16;2!UBERON:0004765;7.50e-14;26!UBERON:0000075;4.51e-12;16!UBERON:0001434;4.82e-12;36!UBERON:0007846;1.34e-11;3!UBERON:0000043;1.34e-11;3!UBERON:0007845;1.34e-11;3!UBERON:0006915;1.65e-11;3!UBERON:0007616;1.65e-11;3!UBERON:0002217;1.65e-11;3!UBERON:0002018;1.65e-11;3!UBERON:0002418;2.64e-11;3!UBERON:0004755;2.64e-11;3!UBERON:0002204;3.12e-09;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,4.01e-47,8;UBERON:0000982,4.01e-47,8;UBERON:0004770,4.01e-47,8;UBERON:0011135,7.19e-39,5;UBERON:0002216,7.19e-39,5;UBERON:0011134,7.19e-39,5;UBERON:0002209,7.19e-39,5;UBERON:0002213,7.19e-39,5;UBERON:0005856,7.19e-39,5;UBERON:0005866,7.19e-39,5;UBERON:0005863,7.19e-39,5;UBERON:0007844,7.19e-39,5;UBERON:0011138,7.19e-39,5;UBERON:0001130,7.19e-39,5;UBERON:0001066,7.19e-39,5;UBERON:0001468,7.19e-39,5;UBERON:0002242,4.58e-24,3;UBERON:0003068,4.58e-24,3;UBERON:0002328,4.58e-24,3;UBERON:0004880,4.58e-24,3;UBERON:0006444,1.27e-16,2;UBERON:0001995,1.27e-16,2;UBERON:0004715,1.27e-16,2;UBERON:0000075,4.41e-12,16;UBERON:0007846,1.49e-11,3;UBERON:0006915,1.49e-11,3;UBERON:0007616,1.49e-11,3;UBERON:0000043,1.49e-11,3;UBERON:0007845,1.49e-11,3;UBERON:0002217,1.49e-11,3;UBERON:0002018,1.49e-11,3;UBERON:0002418,2.15e-11,3;UBERON:0004755,2.15e-11,3 | |||
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| ||
|short_description=p@chr5:140887761..140887777,+ | |||
}} | }} |
Latest revision as of 10:42, 30 July 2015
Short description: | p@chr5:140887761..140887777, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:140887761..140887777, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 4.58e-24 | 3 |
GAG secreting cell | 1.89e-21 | 9 |
carbohydrate secreting cell | 1.89e-21 | 9 |
annulus pulposus cell | 1.27e-16 | 2 |
stromal cell | 6.92e-13 | 28 |
extracellular matrix secreting cell | 8.02e-13 | 15 |
chondroblast | 4.27e-12 | 6 |
chondrocyte | 4.27e-12 | 6 |
fibrocyte | 1.49e-11 | 3 |
synovial cell | 1.49e-11 | 3 |
tendon cell | 1.49e-11 | 3 |
multinucleate cell | 6.72e-09 | 1 |
myotube | 6.72e-09 | 1 |
secretory cell | 3.04e-07 | 36 |
fibroblast of gingiva | 3.36e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
articulation | 4.01e-47 | 8 |
skeletal joint | 4.01e-47 | 8 |
articular system | 4.01e-47 | 8 |
intervertebral cartilage | 7.19e-39 | 5 |
symphysis | 7.19e-39 | 5 |
nonsynovial joint | 7.19e-39 | 5 |
fibrous joint | 7.19e-39 | 5 |
cartilaginous joint | 7.19e-39 | 5 |
developing mesenchymal condensation | 7.19e-39 | 5 |
pre-cartilage condensation | 7.19e-39 | 5 |
cartilaginous condensation | 7.19e-39 | 5 |
cartilage element | 7.19e-39 | 5 |
post-cranial axial skeletal system | 7.19e-39 | 5 |
vertebral column | 7.19e-39 | 5 |
intervertebral disk | 7.19e-39 | 5 |
intervertebral joint | 7.19e-39 | 5 |
nucleus pulposus | 4.58e-24 | 3 |
axial mesoderm | 4.58e-24 | 3 |
notochord | 4.58e-24 | 3 |
chordamesoderm | 4.58e-24 | 3 |
annulus fibrosus | 1.27e-16 | 2 |
fibrocartilage | 1.27e-16 | 2 |
annulus fibrosus disci intervertebralis | 1.27e-16 | 2 |
subdivision of skeletal system | 4.41e-12 | 16 |
dense regular connective tissue | 1.49e-11 | 3 |
stratified squamous epithelium | 1.49e-11 | 3 |
layer of synovial tissue | 1.49e-11 | 3 |
tendon | 1.49e-11 | 3 |
regular connective tissue | 1.49e-11 | 3 |
synovial joint | 1.49e-11 | 3 |
synovial membrane of synovial joint | 1.49e-11 | 3 |
cartilage tissue | 2.15e-11 | 3 |
skeletal tissue | 2.15e-11 | 3 |