FFCP PHASE1:Hg19::chr5:134369643..134369675,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:134369643..134369675,- to FFCP PHASE1:Hg19::chr5:134369643..134369675,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5307 | |EntrezGene=5307 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9004 | |HGNC=9004 | ||
|TSSclassifier=strong | |||
|UniProt=P78337 | |UniProt=P78337 | ||
|association_with_transcript=288bp_to_NM_002653,uc010jea.2_5end | |||
|cluster_id=chr5:134369643..134369675,- | |||
|description=CAGE_peak_4_at_PITX1_5end | |||
|id=chr5:134369643..134369675,- | |||
|ontology_enrichment_celltype=CL:0000066!2.12e-19!254;CL:0000223!2.47e-16!59;CL:0002076!4.70e-15!43;CL:0002251!9.33e-11!21 | |||
|ontology_enrichment_celltype_v019=CL:0002251;2.84e-13;20!CL:0002076;6.49e-09;42!CL:0002621;8.89e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,2.54e-13,20;CL:0000066,2.04e-11,253;CL:0002076,8.14e-11,42;CL:0000223,9.92e-09,58;CL:0002621,1.94e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.22e-10;29 | |||
|ontology_enrichment_disease=DOID:162!5.01e-32!235;DOID:0050687!1.27e-30!143;DOID:14566!2.23e-30!239;DOID:305!4.95e-26!106;DOID:1749!4.44e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.16e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,7.19e-17,143;DOID:305,3.09e-16,106;DOID:162,9.30e-16,235;DOID:14566,4.05e-15,239;DOID:1749,2.41e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001007!1.15e-19!155;UBERON:0001555!1.15e-19!155;UBERON:0007026!1.15e-19!155;UBERON:0004119!3.39e-19!169;UBERON:0000925!3.39e-19!169;UBERON:0006595!3.39e-19!169;UBERON:0004921!5.00e-18!129;UBERON:0004185!5.00e-18!129;UBERON:0000161!5.74e-18!35;UBERON:0000077!3.83e-16!130;UBERON:0001004!3.88e-16!72;UBERON:0001041!1.16e-12!98;UBERON:0000166!4.79e-11!21;UBERON:0000072!1.45e-10!46;UBERON:0005153!5.01e-10!37;UBERON:0008947!5.49e-10!38;UBERON:0003258!5.49e-10!38;UBERON:0000065!7.79e-10!53;UBERON:0001737!1.03e-09!9;UBERON:0003104!2.72e-09!238;UBERON:0009142!2.72e-09!238;UBERON:0000162!2.24e-08!14;UBERON:0001353!2.24e-08!14;UBERON:0000163!2.24e-08!14;UBERON:0006866!2.24e-08!14;UBERON:0000164!2.24e-08!14;UBERON:0000931!2.24e-08!14;UBERON:0005911!3.11e-08!82;UBERON:0000165!3.17e-08!28;UBERON:0000930!3.17e-08!28;UBERON:0004122!1.55e-07!15;UBERON:0000344!2.53e-07!12;UBERON:0001557!3.27e-07!19;UBERON:0002367!3.28e-07!11;UBERON:0010147!3.28e-07!11;UBERON:0009846!3.28e-07!11;UBERON:0003353!3.28e-07!11;UBERON:0004902!3.28e-07!11;UBERON:0003820!3.28e-07!11;UBERON:0009847!3.28e-07!11;UBERON:0001046!4.80e-07!19;UBERON:0003102!8.62e-07!95;UBERON:0005157!9.87e-07!51 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.62e-19;9!UBERON:0001557;1.62e-19;9!UBERON:0000161;2.06e-11;19!UBERON:0000166;2.06e-11;19!UBERON:0000165;4.99e-10;28!UBERON:0001004;5.72e-10;65!UBERON:0000072;1.13e-09;37!UBERON:0000344;1.15e-08;20!UBERON:0003929;1.97e-07;7!UBERON:0001723;3.75e-07;3!UBERON:0001033;3.75e-07;3!UBERON:0000065;4.33e-07;44!UBERON:0001041;5.04e-07;14!UBERON:0001949;8.89e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.54e-20,9;UBERON:0001004,1.65e-18,74;UBERON:0001557,1.34e-17,19;UBERON:0000166,4.60e-14,22;UBERON:0000072,1.53e-13,47;UBERON:0000161,2.19e-13,36;UBERON:0001041,3.31e-12,87;UBERON:0001007,3.70e-12,145;UBERON:0001555,3.70e-12,145;UBERON:0007026,3.70e-12,145;UBERON:0004921,5.72e-12,118;UBERON:0000065,4.35e-11,54;UBERON:0008947,5.12e-11,38;UBERON:0003258,5.12e-11,38;UBERON:0004119,4.30e-10,160;UBERON:0000925,4.30e-10,160;UBERON:0006595,4.30e-10,160;UBERON:0000165,6.99e-10,29;UBERON:0000930,6.99e-10,29;UBERON:0000344,7.25e-09,20;UBERON:0001949,1.94e-07,3;UBERON:0001723,5.00e-07,3;UBERON:0001033,5.00e-07,3;UBERON:0010056,5.00e-07,3 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.30120591877825,1.47901604066715,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89151321907653,1.50401373190767,1.73815822752988,0,0.486634870302636,0,0,0,0,0.728590576585084,0,0,0,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05265836499774,0,0.379891534993739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0.122834317311768,0,0,0.741800787835671,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0.339121184620975,1.93260853163297,1.90922284413584,1.43402297694502,0,0,0.116193942869518,0,0,0,0,1.28648187638577,1.38134921352481,0,0,2.12952240071719,3.70886318171824,2.16909926895134,2.20587945464788,1.30727666455444,4.74541238222193,2.02246962240247,1.96221465125346,1.92373578473195,0,0,0,0,0,0,0,0,0.245976877086227,0.171567810298526,0.109750285408626,0,0,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,0.671928512795438,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,3.57656445851882,0,0.797814349754612,0,0.514414748524284,0,0.266422179016099,0.428933980974443,1.62786481617433,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0.289562613335158,0,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0.664225598535437,0.184369168541703,0.60818530127658,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0.321707842287215,0,0,0,0.164254312027618,0,0,0.846016147141356,0.802025881213139,3.40699659062816,1.14814448164607,0.182091168006717,1.18011973463482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366277859273374,0.41254749960294,0,0,0,0.096670718292122,0,0,0.137836572484531,0.322260734604821,0.435050081742686,0,0.0890320356467374,0.330569830721956,0,0.127612712494584,0.809262246844399,0,0,0,0,0,0,0,0.286249773483982,0.372158369359667,0,0,0,0,0,0,0.539617372749944,0,0.589062011728432,0,0,0,0.975267478179181,0,0,0.818999468447914,4.94919011837995,0,0,0,0,0,0,0.202910376962704,0.92947049429925,0,0.143411352204052,0.294747123039363,0.35667105148125,0,0.633322905892992,0,0,0.349934720244983,0.48111056362756,2.01090682660736,0,0,0.43050537267123,0,0.886860307073351,0,0,0,0,0,0,0,0,0,1.70918513803957,0,1.47024129588619,0,0,0,0.159426272728822,0,0,0,0,0,0,1.25343916618419,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0.270455678475983,0.33307196799782,0,0.18714054040822,0,0.121360521749513,0,0.284136146806413,0.47748896947538,0,0,0,0,0.111308705022906,0,0.844501632511974,0,0,0,0.306806047506464,0,0,0.359473404589307,1.25314822272926,1.53471711068062,0.197286811273867,0,0,0,0,0,0.260427761085233,1.13697999995054,0,1.0241410345695,1.01701460117107,0,0,0,0.347249989866585,0,0,0,0,0,0,0.544692317594951,10.0385095880594,0.461701551022782,0.113942055847001,4.38071418337314,1.34636466614658,0.651884231532048,0,0.183195186803725,0,0,0,1.32969345520125,0.451191321234361,0.392125068635479,0.839107934879214,0.948768663620925,0,0,0,1.13082457147153,0,0,0,0,0,0,0,0.067401132980677,0,0,0.91227394607833,0.782658475728359,0.728341138602278,0,1.20990716048664,0,0,1.80388103297391,0.933193722575224,0,0,0,0,0,0.277349346026277,0.173559738335131,1.17590876897253,0.261177619741208,0,0.171986032471617,4.06376591414158,3.36210858596454,4.4342346808733,3.68558262655994,0,0,0.137041924646751,0.596143835108969,0,0.977756913674015,0.0801588202515337,0,0.799238438328521,1.15272333723285,0.229073192331831,0.343189995723929,0.720273989940749,0,4.47818665771911,0.67952103036807,0.732219924186332,1.01998217636322,1.15580235960608,0,0,0,1.28929632425987,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.157566364614447,0.824158583811665,0.741438982396034,0.688992370603241,0,0,0,0,0,0,0,0,0,2.68347750079413,0,0,0.528001682597033,1.43429871466276,0.767660789277781,0,0,0,0,0,0,0,1.06720276974141,0,0.566560457600628,0,0,0,0,0.342173675768659,1.40963004463334,0,0,0,0,0.592834895693833,0.365377795142688,7.021753835472,0,0,0,0,1.25643277000187,0,0,0,0,0,0,0.138348634936231,0.624902039810533,0,0,0.705797459094515,1.40500471742064,0.28984205722165,0,0,0,0.568209015825267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0.643324774124777,1.56596575179127,0.680117776536817,0.231522474323834,0.734210113519403,0.895444205407437,1.23520578864389,1.31570429747224,0.883445729729405,0.38582807654183,1.35153952522458,0.512483037175893,1.38172136692479,0.911579868532147,0,0,0,0,0.327609848846413,0.245772908753719,1.26787274015176,0,0,0,1.13503190713367,0.920529751259204,1.53867458491389,0.622077260032973,0,0.754773679776773,0,0,1.69732529954025,0.212574920101683,0,1.67593475391973,0,0.0788617450012534,0,0,2.1437183414724,0,0,0,0,0,0,0,0,3.04257927353179,0.35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| ||
|short_description=p4@PITX1 | |||
}} | }} |
Latest revision as of 17:39, 24 September 2015
Short description: | p4@PITX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PITX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 288bp_to_NM_002653, uc010jea.2_5end |
EntrezGene: | PITX1 |
HGNC: | 9004 |
UniProt: | P78337 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 2.54e-13 | 20 |
epithelial cell | 2.04e-11 | 253 |
endo-epithelial cell | 8.14e-11 | 42 |
endodermal cell | 9.92e-09 | 58 |
gingival epithelial cell | 1.94e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.54e-20 | 9 |
respiratory system | 1.65e-18 | 74 |
upper respiratory tract | 1.34e-17 | 19 |
oral opening | 4.60e-14 | 22 |
segment of respiratory tract | 1.53e-13 | 47 |
orifice | 2.19e-13 | 36 |
foregut | 3.31e-12 | 87 |
digestive system | 3.70e-12 | 145 |
digestive tract | 3.70e-12 | 145 |
primitive gut | 3.70e-12 | 145 |
subdivision of digestive tract | 5.72e-12 | 118 |
respiratory tract | 4.35e-11 | 54 |
respiratory primordium | 5.12e-11 | 38 |
endoderm of foregut | 5.12e-11 | 38 |
endoderm-derived structure | 4.30e-10 | 160 |
endoderm | 4.30e-10 | 160 |
presumptive endoderm | 4.30e-10 | 160 |
mouth | 6.99e-10 | 29 |
stomodeum | 6.99e-10 | 29 |
mucosa | 7.25e-09 | 20 |
gingival epithelium | 1.94e-07 | 3 |
tongue | 5.00e-07 | 3 |
gustatory system | 5.00e-07 | 3 |
future tongue | 5.00e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 7.19e-17 | 143 |
carcinoma | 3.09e-16 | 106 |
cancer | 9.30e-16 | 235 |
disease of cellular proliferation | 4.05e-15 | 239 |
squamous cell carcinoma | 2.41e-08 | 14 |