FFCP PHASE1:Hg19::chr22:45809510..45809515,-: Difference between revisions
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m (moved FFCP PHASE1 hg19::chr22:45809510..45809515,- to FFCP PHASE1:Hg19::chr22:45809510..45809515,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27127 | |EntrezGene=27127 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11112 | |HGNC=11112 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NDV3 | |UniProt=Q8NDV3 | ||
|association_with_transcript=-10bp_to_ENST00000404354,NM_148674,uc003bgc.2,uc003bgd.2_5end | |||
|cluster_id=chr22:45809510..45809515,- | |||
|coexpression_cluster_id=C2648 | |||
|description=CAGE_peak_4_at_SMC1B_5end | |||
|id=chr22:45809510..45809515,- | |||
|ontology_enrichment_celltype=CL:0002535!6.13e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0002327;1.38e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002327,1.22e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0008425;4.27e-34;1!UBERON:0009117;3.25e-14;10!UBERON:0005564;3.25e-14;10 | |||
|ontology_enrichment_disease=DOID:305!2.49e-14!106;DOID:14566!1.74e-10!239;DOID:162!4.32e-10!235;DOID:0050687!6.05e-10!143;DOID:0050615!3.03e-09!16;DOID:0050686!7.26e-08!137;DOID:1325!7.38e-08!7;DOID:3904!7.38e-08!7;DOID:4929!1.46e-07!2;DOID:1324!2.41e-07!15 | |||
|ontology_enrichment_disease_v019=DOID:4929;8.34e-18;2!DOID:5093;1.38e-09;4!DOID:1612;1.38e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,1.27e-17,2;DOID:5093,1.22e-09,4;DOID:1612,1.22e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0006955!6.13e-08!2;UBERON:0004801!6.13e-08!2;UBERON:0005157!6.38e-08!51;UBERON:0005153!6.45e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;4.27e-34;1!UBERON:0003703;4.27e-34;1!UBERON:0001174;4.27e-34;1!UBERON:0004914;4.27e-34;1!UBERON:0000473;1.70e-17;8!UBERON:0003135;5.10e-13;11!UBERON:0002114;2.45e-12;2!UBERON:0001911;1.38e-09;4!UBERON:0002394;1.38e-09;4!UBERON:0003928;1.38e-09;4!UBERON:0002108;6.33e-08;4!UBERON:0000991;2.77e-07;21!UBERON:0003101;5.40e-07;22!UBERON:0000079;5.40e-07;22!UBERON:0005910;8.25e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,9.85e-34,1;UBERON:0003703,9.85e-34,1;UBERON:0001174,9.85e-34,1;UBERON:0004914,9.85e-34,1;UBERON:0000473,2.01e-17,8;UBERON:0003135,5.76e-13,11;UBERON:0002114,3.24e-12,2;UBERON:0001911,1.22e-09,4;UBERON:0005333,1.22e-09,4;UBERON:0008425,1.22e-09,4;UBERON:0005311,1.22e-09,4;UBERON:0002108,7.49e-08,4;UBERON:0000991,2.95e-07,21;UBERON:0009196,2.95e-07,21;UBERON:0009117,2.95e-07,21;UBERON:0005564,2.95e-07,21;UBERON:0004176,5.74e-07,22;UBERON:0003101,5.74e-07,22;UBERON:0000079,5.74e-07,22;UBERON:0005910,7.17e-07,6;UBERON:0002394,9.49e-07,6;UBERON:0003928,9.49e-07,6 | |||
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| ||
|short_description=p4@SMC1B | |||
}} | }} |
Latest revision as of 04:02, 25 September 2015
Short description: | p4@SMC1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SMC1B_5end |
Coexpression cluster: | C2648_transitionalcell_acute_testis_small_breast_argyrophil_epidermoid |
Association with transcript: | -10bp_to_ENST00000404354, NM_148674, uc003bgc.2, uc003bgd.2_5end |
EntrezGene: | SMC1B |
HGNC: | 11112 |
UniProt: | Q8NDV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mammary gland epithelial cell | 1.22e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 9.85e-34 | 1 |
extrahepatic bile duct | 9.85e-34 | 1 |
common bile duct | 9.85e-34 | 1 |
duodenal papilla | 9.85e-34 | 1 |
testis | 2.01e-17 | 8 |
male reproductive organ | 5.76e-13 | 11 |
duodenum | 3.24e-12 | 2 |
mammary gland | 1.22e-09 | 4 |
mammary bud | 1.22e-09 | 4 |
mammary ridge | 1.22e-09 | 4 |
mammary placode | 1.22e-09 | 4 |
small intestine | 7.49e-08 | 4 |
gonad | 2.95e-07 | 21 |
indifferent external genitalia | 2.95e-07 | 21 |
indifferent gonad | 2.95e-07 | 21 |
gonad primordium | 2.95e-07 | 21 |
external genitalia | 5.74e-07 | 22 |
male organism | 5.74e-07 | 22 |
male reproductive system | 5.74e-07 | 22 |
transitional epithelium | 7.17e-07 | 6 |
bile duct | 9.49e-07 | 6 |
digestive system duct | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 1.27e-17 | 2 |
thoracic cancer | 1.22e-09 | 4 |
breast cancer | 1.22e-09 | 4 |