FFCP PHASE1:Hg19::chr1:24829320..24829332,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:24829320..24829332,+ to FFCP PHASE1:Hg19::chr1:24829320..24829332,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11123 | |EntrezGene=11123 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3042 | |HGNC=3042 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UKA8,E5L4P0 | |UniProt=Q9UKA8,E5L4P0 | ||
|association_with_transcript=-54bp_to_ENST00000374395,ENST00000436717,NM_001251977,NM_001251981,NM_001251983,NM_013441,uc001bjj.2_5end | |||
|cluster_id=chr1:24829320..24829332,+ | |||
|coexpression_cluster_id=C1473 | |||
|description=CAGE_peak_6_at_RCAN3_5end | |||
|id=chr1:24829320..24829332,+ | |||
|ontology_enrichment_celltype=CL:0000791!9.79e-11!18;CL:0000789!9.79e-11!18;CL:0002420!9.79e-11!18;CL:0002419!9.79e-11!18;CL:0000790!9.79e-11!18;CL:0000084!1.77e-09!25;CL:0000827!1.77e-09!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.06e-25;18!CL:0000789;6.06e-25;18!CL:0002419;6.06e-25;18!CL:0000084;1.54e-20;25!CL:0000625;3.21e-14;11!CL:0000624;2.24e-11;6!CL:0000542;1.01e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.30e-25,18;CL:0000789,3.30e-25,18;CL:0002420,3.30e-25,18;CL:0002419,3.30e-25,18;CL:0000790,3.30e-25,18;CL:0000084,1.81e-20,25;CL:0000827,1.81e-20,25;CL:0000625,1.08e-14,11;CL:0000838,3.50e-12,52;CL:0000542,8.02e-12,53;CL:0000051,8.02e-12,53;CL:0000624,2.14e-11,6 | |||
|ontology_enrichment_development_v019=CL:0000790;6.06e-25;18!CL:0000051;1.01e-07;53!UBERON:0006215;5.94e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.85e-14!115;UBERON:0001049!9.42e-12!57;UBERON:0005068!9.42e-12!57;UBERON:0006241!9.42e-12!57;UBERON:0007135!9.42e-12!57;UBERON:0002616!3.96e-09!59;UBERON:0001017!5.34e-09!82;UBERON:0003075!1.47e-08!86;UBERON:0007284!1.47e-08!86;UBERON:0005743!1.69e-08!86;UBERON:0000955!3.21e-08!69;UBERON:0006238!3.21e-08!69;UBERON:0002346!1.13e-07!90;UBERON:0003076!1.25e-07!15;UBERON:0003057!1.25e-07!15;UBERON:0000073!3.51e-07!94;UBERON:0001016!3.51e-07!94;UBERON:0000153!4.59e-07!129;UBERON:0007811!4.59e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0004733;1.20e-10;12!UBERON:0002028;1.20e-10;12!UBERON:0002298;1.03e-09;6!UBERON:0004732;1.17e-09;13!UBERON:0001894;4.45e-08;7!UBERON:0000073;1.99e-07;53!UBERON:0002616;1.99e-07;53!UBERON:0003296;2.41e-07;4!UBERON:0010133;2.41e-07;4!UBERON:0002680;4.67e-07;9!UBERON:0001895;4.67e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,5.77e-12,15;UBERON:0003057,5.77e-12,15;UBERON:0001049,3.31e-11,56;UBERON:0005068,3.31e-11,56;UBERON:0006241,3.31e-11,56;UBERON:0007135,3.31e-11,56;UBERON:0004733,9.89e-11,12;UBERON:0002028,9.89e-11,12;UBERON:0007277,9.89e-11,12;UBERON:0000073,4.95e-10,53;UBERON:0002616,4.95e-10,53;UBERON:0002298,7.81e-10,6;UBERON:0007023,7.92e-10,114;UBERON:0004732,9.78e-10,13;UBERON:0001894,7.94e-08,7;UBERON:0006222,7.94e-08,7;UBERON:0001017,1.08e-07,81;UBERON:0000955,3.62e-07,68;UBERON:0006238,3.62e-07,68;UBERON:0003296,4.60e-07,4;UBERON:0010133,4.60e-07,4;UBERON:0002680,4.92e-07,9;UBERON:0001895,4.92e-07,9;UBERON:0010092,4.92e-07,9;UBERON:0001016,7.13e-07,89 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,1.0007329835313,0.446961094427288,0,0,0,0,0,0.697801167972428,0.436882744260345,0.791300934685361,0.37129905888014,0,0,0,0,0,0.369363174230364,0.408001382488506,0.313454721478088,0.572471974262113,0.136874425072884,0,0,0,0,1.18009283054671,1.53531759238885,0.928896739896456,0,0.90361775633475,0.369754010166788,1.62681121218633,0,0.293600439334847,1.10799081706375,1.40381113229099,1.30206522429511,0.223915474239924,0.647787332037959,0,0.290796477559129,0.377875943688809,0.242584061187816,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0.376484679085209,0.272906150057846,0.224723484445085,0,0.320929027076094,0.639337125799041,0,0,0,0,0.56738522469114,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0.425208599930087,0.209658645508376,0.112328631146495,0,0.64290234678832,0.285012743741249,0,0,0,1.09227722252426,0,0.853460445133014,1.20118796110804,2.29900975981793,0.661044872784862,0,0.569212969109448,0,0.764546456250458,0,1.68152568894461,0,8.65522988500866,3.53709686474248,4.93443597598822,4.68122187093899,4.23698946623668,6.15482147455153,0,1.33692548262208,2.3568472597987,3.54454231333794,2.16643091012012,2.30564375506215,1.69077151827842,2.46656856905514,2.21080014228679,0.869409257205157,6.07974908964448,5.08327573370455,5.22677619024884,1.13309342697566,2.29932296161153,3.4362744548263,2.02415753615602,2.22995790026868,2.60433381542567,1.90090408889675,3.01150238155546,3.19966527886046,0,2.36777252044017,1.64225599384209,3.22570789159572,1.33720097891754,3.91025890483557,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.567208902984407,0.221729397462564,0.527008714158756,1.0478326039817,0.364295288292542,0.370784442784429,0.324547393654683,0,0.132957960518865,0.476981248610684,0,0.74291500265913,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0.225222960966644,0,0,0.732806975721629,1.31780417436063,0,0.436094052142534,0.993943903390637,0,0.132409180813219,0,0.354668382198357,0.560677600142307,0,0.49333509683432,0,0,0.163461903113459,0,0.576175924479999,0,0,0,0,0.23486899728753,0.161872944368132,0,0,0.245668634623536,0.103325781175765,0,0.247266929278557,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0.113432183160021,0.358779271377724,0.213557388818567,0,0,0.103052529238439,0.257640540045629,0.18611685633159,0.337552664482532,0.292311015483596,0,0.184099797284599,0,0,0.201504196455281,0,0.386521706326594,0.272746120590835,0.860413786167011,0.121973706129595,0.265059536642971,0.464775771478074,0.414644220061482,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0.721879481669586,0.118306800039844,0,0.482022059766964,0.110293972732394,0.217879444092406,0,0.269662616320329,0,0,0.738155454624648,0,0,0,0,0,0,0,0.860919069801795,0.171567810298526,0.658501712451753,0,0.502644862058154,0.370353780634118,0,0,0,0.463721619900307,0.469634776943287,0.288732895522148,0,0,0,0,0.246217006087397,0.234004265139238,0,0,0.839910640994298,0.708875486211932,0.447792613514241,1.16253575405585,0,0.492663237895943,0.616339038092582,0.207328115540772,0.576479813667846,0.37872730027914,0.63497894292169,0.381988425558278,0,1.71072446022705,0.205654985406647,0.600686115687835,0,0.112131084345361,0,0,0,0,0,0.26593811658487,0,0.514414748524284,1.41849132023278,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,2.29723871668228,1.42636905040718,0.144781306667579,0.205476322550383,0.358121926479791,1.00876629594175,0.394061520403854,0.431255149719035,2.18183161675572,0.254094624222463,1.30139853857622,0.773288812777695,0.670065061337395,0,0,0,0.414415513436035,0.24538298343828,0,0,0.207970861530807,0.356857977594324,0.157702415033935,0.35142424497814,0.601892199455438,0,0,0,0,0.173767228936166,0,0.343143423810856,0.206768026122887,1.07857100409308,2.77491650288955,0.303127571446259,0,0.30239029332968,0,0.306923946576125,0,0.384417447767103,0,0.482561763430822,0,0,0.177561725313127,0.164254312027618,0,0.116210378459959,0.604297247958111,0.802025881213139,0.736647911487171,0,0.182091168006717,0,0.902399225814824,0.231046011313244,0.784349769176855,1.46139224653261,0.211103257785751,0,0.170093705276516,0.647747748306418,0,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,0,0.328014645699706,0,0.515205058238611,0.640986253728404,0.907604499126468,0,0,0,0,0.154048617114644,0,0,0.214840489736547,0.145016693914229,0.170453254832202,0.0890320356467374,1.32227932288782,0.576570202095319,0.765676274967505,1.51736671283325,0.464845549297286,0,0,0,0,0.869932992075073,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0.655894752046633,0.405820753925408,0,0,0.143411352204052,0.392996164052485,0.35667105148125,0,0,0,0,0,0.577332676353072,0,0,0.376575203107117,0.86101074534246,1.68471475667626,0.886860307073351,0.459446800413919,2.02979043692868,0,1.70894156152249,0.476463550915578,0.822724546172388,0,0,1.58625035258854,0.534120355637366,0.9624798552633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| ||
|short_description=p6@RCAN3 | |||
}} | }} |
Latest revision as of 00:42, 17 September 2015
Short description: | p6@RCAN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RCAN3_5end |
Coexpression cluster: | C1473_CD4_cerebellum_thymus_neuroblastoma_CD8_Peripheral_caudate |
Association with transcript: | -54bp_to_ENST00000374395, ENST00000436717, NM_001251977, NM_001251981, NM_001251983, NM_013441, uc001bjj.2_5end |
EntrezGene: | RCAN3 |
HGNC: | 3042 |
UniProt: | Q9UKA8E5L4P0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.30e-25 | 18 |
alpha-beta T cell | 3.30e-25 | 18 |
immature T cell | 3.30e-25 | 18 |
mature T cell | 3.30e-25 | 18 |
immature alpha-beta T cell | 3.30e-25 | 18 |
T cell | 1.81e-20 | 25 |
pro-T cell | 1.81e-20 | 25 |
CD8-positive, alpha-beta T cell | 1.08e-14 | 11 |
lymphoid lineage restricted progenitor cell | 3.50e-12 | 52 |
lymphocyte | 8.02e-12 | 53 |
common lymphoid progenitor | 8.02e-12 | 53 |
CD4-positive, alpha-beta T cell | 2.14e-11 | 6 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 5.77e-12 | 15 |
chordal neural plate | 5.77e-12 | 15 |
neural tube | 3.31e-11 | 56 |
neural rod | 3.31e-11 | 56 |
future spinal cord | 3.31e-11 | 56 |
neural keel | 3.31e-11 | 56 |
segmental subdivision of hindbrain | 9.89e-11 | 12 |
hindbrain | 9.89e-11 | 12 |
presumptive hindbrain | 9.89e-11 | 12 |
regional part of nervous system | 4.95e-10 | 53 |
regional part of brain | 4.95e-10 | 53 |
brainstem | 7.81e-10 | 6 |
adult organism | 7.92e-10 | 114 |
segmental subdivision of nervous system | 9.78e-10 | 13 |
diencephalon | 7.94e-08 | 7 |
future diencephalon | 7.94e-08 | 7 |
central nervous system | 1.08e-07 | 81 |
brain | 3.62e-07 | 68 |
future brain | 3.62e-07 | 68 |
gland of diencephalon | 4.60e-07 | 4 |
neuroendocrine gland | 4.60e-07 | 4 |
regional part of metencephalon | 4.92e-07 | 9 |
metencephalon | 4.92e-07 | 9 |
future metencephalon | 4.92e-07 | 9 |
nervous system | 7.13e-07 | 89 |