FFCP PHASE1:Hg19::chr1:100643765..100643829,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:100643765..100643829,- to FFCP PHASE1:Hg19::chr1:100643765..100643829,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=127495 | |EntrezGene=127495 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28228 | |HGNC=28228 | ||
|TSSclassifier=strong | |||
|UniProt=Q96DD0 | |UniProt=Q96DD0 | ||
|association_with_transcript=0bp_to_ENST00000342895,ENST00000370136,ENST00000370137,ENST00000370138,NM_144620,uc001dsw.1,uc001dsx.1,uc001dsy.1,uc001dsz.1_5end | |||
|cluster_id=chr1:100643765..100643829,- | |||
|coexpression_cluster_id=C3838 | |||
|description=CAGE_peak_1_at_LRRC39_5end | |||
|id=chr1:100643765..100643829,- | |||
|ontology_enrichment_celltype=CL:0000147!4.07e-08!14;CL:0000148!1.10e-07!10;CL:0000541!1.10e-07!10;CL:0000188!5.06e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000148;1.24e-10;10!CL:0000147;2.20e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.22e-10,10;CL:0000541,1.22e-10,10;CL:0000147,2.18e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.03e-13;82!UBERON:0005062;5.85e-08;4!UBERON:0007284;5.85e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;4.31e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,3.70e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.47e-63!115;UBERON:0001049!1.19e-41!57;UBERON:0005068!1.19e-41!57;UBERON:0006241!1.19e-41!57;UBERON:0007135!1.19e-41!57;UBERON:0002780!3.74e-41!41;UBERON:0001890!3.74e-41!41;UBERON:0006240!3.74e-41!41;UBERON:0003080!6.53e-40!42;UBERON:0003075!3.56e-37!86;UBERON:0007284!3.56e-37!86;UBERON:0005743!8.46e-36!86;UBERON:0002616!1.57e-35!59;UBERON:0002346!8.51e-35!90;UBERON:0001017!4.26e-33!82;UBERON:0000955!6.31e-33!69;UBERON:0006238!6.31e-33!69;UBERON:0001893!2.01e-31!34;UBERON:0002020!5.72e-31!34;UBERON:0003528!5.72e-31!34;UBERON:0000073!6.22e-31!94;UBERON:0001016!6.22e-31!94;UBERON:0003056!8.52e-31!61;UBERON:0002791!4.66e-30!33;UBERON:0001869!3.78e-29!32;UBERON:0000153!5.53e-26!129;UBERON:0007811!5.53e-26!129;UBERON:0001950!8.40e-24!20;UBERON:0002619!1.23e-23!22;UBERON:0000033!3.25e-23!123;UBERON:0004121!1.87e-20!169;UBERON:0000956!3.54e-20!25;UBERON:0000203!3.54e-20!25;UBERON:0000924!1.42e-19!173;UBERON:0006601!1.42e-19!173;UBERON:0000483!3.32e-13!309;UBERON:0002420!4.05e-13!9;UBERON:0007245!4.05e-13!9;UBERON:0010009!4.05e-13!9;UBERON:0010011!4.05e-13!9;UBERON:0000454!4.05e-13!9;UBERON:0000119!7.09e-13!312;UBERON:0002308!1.26e-12!9;UBERON:0000125!1.26e-12!9;UBERON:0001894!2.07e-11!7;UBERON:0006222!2.07e-11!7;UBERON:0000025!6.88e-11!194;UBERON:0000481!1.31e-10!347;UBERON:0009663!1.42e-10!7;UBERON:0000200!5.19e-10!6;UBERON:0000475!6.19e-10!365;UBERON:0001871!2.28e-09!7;UBERON:0004111!3.62e-09!241;UBERON:0002021!4.77e-08!5;UBERON:0000477!5.78e-08!286;UBERON:0003296!2.07e-07!4;UBERON:0010133!2.07e-07!4;UBERON:0000062!2.47e-07!511;UBERON:0000369!4.67e-07!4;UBERON:0002435!4.67e-07!4;UBERON:0000204!4.67e-07!4;UBERON:0010082!4.67e-07!4;UBERON:0000064!6.89e-07!219;UBERON:0007100!9.18e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.57e-24;41!UBERON:0001890;1.57e-24;41!UBERON:0001869;3.04e-24;32!UBERON:0001950;2.83e-23;20!UBERON:0001893;1.56e-22;34!UBERON:0002791;6.46e-22;32!UBERON:0002619;5.82e-21;22!UBERON:0003528;3.65e-20;34!UBERON:0002020;3.65e-20;34!UBERON:0000956;3.67e-18;25!UBERON:0000203;3.67e-18;25!UBERON:0000200;1.02e-16;6!UBERON:0001894;7.54e-15;7!UBERON:0007023;2.01e-14;114!UBERON:0000073;4.99e-14;53!UBERON:0002616;4.99e-14;53!UBERON:0002784;1.03e-12;4!UBERON:0000955;6.63e-12;68!UBERON:0001017;8.57e-11;75!UBERON:0003978;1.69e-10;3!UBERON:0000946;1.69e-10;3!UBERON:0004151;1.74e-10;3!UBERON:0001870;3.29e-09;3!UBERON:0001872;5.53e-09;5!UBERON:0007100;7.00e-09;25!UBERON:0005090;8.40e-08;2!UBERON:0001630;8.40e-08;2!UBERON:0002420;8.62e-08;9!UBERON:0007245;8.62e-08;9!UBERON:0010009;8.62e-08;9!UBERON:0010011;8.62e-08;9!UBERON:0000454;8.62e-08;9!UBERON:0001905;8.67e-08;2!UBERON:0002757;8.67e-08;2!UBERON:0010134;8.67e-08;2!UBERON:0005408;8.67e-08;2!UBERON:0001899;8.67e-08;2!UBERON:0000341;1.05e-07;2!UBERON:0003296;1.06e-07;4!UBERON:0010133;1.06e-07;4!UBERON:0002081;1.67e-07;2!UBERON:0002133;2.02e-07;2!UBERON:0000369;3.10e-07;4!UBERON:0002435;3.10e-07;4!UBERON:0000204;3.10e-07;4!UBERON:0001016;5.30e-07;83!UBERON:0002771;8.13e-07;2!UBERON:0009663;8.23e-07;7!UBERON:0003127;8.89e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.54e-51,114;UBERON:0002780,2.46e-36,41;UBERON:0001890,2.46e-36,41;UBERON:0003080,2.46e-36,41;UBERON:0006240,2.46e-36,41;UBERON:0000073,8.89e-27,53;UBERON:0002616,8.89e-27,53;UBERON:0001869,1.99e-26,32;UBERON:0001049,5.08e-25,56;UBERON:0005068,5.08e-25,56;UBERON:0006241,5.08e-25,56;UBERON:0007135,5.08e-25,56;UBERON:0003056,1.05e-24,61;UBERON:0001893,1.22e-24,34;UBERON:0002791,1.59e-23,32;UBERON:0001950,2.21e-23,20;UBERON:0000955,8.27e-23,68;UBERON:0006238,8.27e-23,68;UBERON:0003075,4.77e-22,82;UBERON:0007284,4.77e-22,82;UBERON:0003528,6.40e-22,34;UBERON:0002020,6.40e-22,34;UBERON:0002619,4.65e-21,22;UBERON:0002346,1.10e-20,86;UBERON:0010314,8.23e-20,132;UBERON:0001017,1.06e-19,81;UBERON:0010371,7.62e-19,104;UBERON:0000956,3.02e-18,25;UBERON:0000203,3.02e-18,25;UBERON:0001016,4.46e-17,89;UBERON:0000200,8.32e-17,6;UBERON:0001894,7.65e-15,7;UBERON:0006222,7.65e-15,7;UBERON:0004121,9.46e-15,171;UBERON:0000924,9.46e-15,171;UBERON:0006601,9.46e-15,171;UBERON:0002784,1.15e-12,4;UBERON:0003978,1.66e-10,3;UBERON:0009751,1.66e-10,3;UBERON:0000946,1.66e-10,3;UBERON:0002523,1.66e-10,3;UBERON:0005983,1.66e-10,3;UBERON:0002165,1.66e-10,3;UBERON:0002062,1.66e-10,3;UBERON:0007280,1.66e-10,3;UBERON:0004151,1.77e-10,3;UBERON:0001870,2.21e-09,3;UBERON:0001872,4.23e-09,5;UBERON:0000025,2.76e-08,192;UBERON:0007100,4.15e-08,27;UBERON:0005090,8.40e-08,2;UBERON:0001630,8.40e-08,2;UBERON:0001905,8.68e-08,2;UBERON:0002757,8.68e-08,2;UBERON:0010134,8.68e-08,2;UBERON:0005408,8.68e-08,2;UBERON:0001899,8.68e-08,2;UBERON:0003296,9.17e-08,4;UBERON:0010133,9.17e-08,4;UBERON:0002420,9.68e-08,9;UBERON:0007245,9.68e-08,9;UBERON:0010009,9.68e-08,9;UBERON:0010011,9.68e-08,9;UBERON:0000454,9.68e-08,9;UBERON:0000341,1.05e-07,2;UBERON:0004111,1.32e-07,240;UBERON:0011216,1.49e-07,223;UBERON:0002081,1.65e-07,2;UBERON:0010227,1.65e-07,2;UBERON:0002133,1.99e-07,2;UBERON:0000369,3.82e-07,4;UBERON:0002435,3.82e-07,4;UBERON:0000204,3.82e-07,4;UBERON:0010082,3.82e-07,4;UBERON:0000483,5.15e-07,306;UBERON:0000119,7.39e-07,309;UBERON:0002771,8.38e-07,2;UBERON:0009663,8.92e-07,7;UBERON:0003127,9.73e-07,2;UBERON:0002702,9.73e-07,2 | |||
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| ||
|short_description=p1@LRRC39 | |||
}} | }} |
Latest revision as of 04:12, 25 September 2015
Short description: | p1@LRRC39 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC39_5end |
Coexpression cluster: | C3838_skeletal_pineal_heart_tongue_throat_diaphragm_left |
Association with transcript: | 0bp_to_ENST00000342895, ENST00000370136, ENST00000370137, ENST00000370138, NM_144620, uc001dsw.1, uc001dsx.1, uc001dsy.1, uc001dsz.1_5end |
EntrezGene: | LRRC39 |
HGNC: | 28228 |
UniProt: | Q96DD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.22e-10 | 10 |
melanoblast | 1.22e-10 | 10 |
pigment cell | 2.18e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
heart disease | 3.70e-07 | 2 |