FFCP PHASE1:Hg19::chr18:55102806..55102847,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr18:55102806..55102847,+ to FFCP PHASE1:Hg19::chr18:55102806..55102847,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9480 | |EntrezGene=9480 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8139 | |HGNC=8139 | ||
|TSSclassifier=strong | |||
|UniProt=O95948 | |UniProt=O95948 | ||
|association_with_transcript=-69bp_to_ENST00000262095,ENST00000491143,NM_004852,uc002lgo.2_5end | |||
|cluster_id=chr18:55102806..55102847,+ | |||
|description=CAGE_peak_3_at_ONECUT2_5end | |||
|id=chr18:55102806..55102847,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.42e-10;12!CL:0000047;3.82e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.69e-10,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.40e-15;11!UBERON:0009497;5.03e-13;13!UBERON:0008947;2.07e-10;29!UBERON:0001041;2.83e-08;30!UBERON:0006595;5.76e-07;86 | |||
|ontology_enrichment_disease=DOID:0050687!1.81e-29!143;DOID:162!5.71e-26!235;DOID:14566!8.09e-25!239;DOID:305!7.20e-24!106;DOID:0050686!2.87e-10!137;DOID:299!1.65e-07!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.42e-18,106;DOID:0050687,4.61e-18,143;DOID:162,3.15e-14,235;DOID:14566,9.60e-14,239 | |||
|ontology_enrichment_uberon=UBERON:0001737!5.32e-12!9;UBERON:0000073!1.27e-10!94;UBERON:0001016!1.27e-10!94;UBERON:0001017!8.63e-10!82;UBERON:0005743!1.49e-09!86;UBERON:0002308!1.98e-09!9;UBERON:0000125!1.98e-09!9;UBERON:0000955!4.52e-09!69;UBERON:0006238!4.52e-09!69;UBERON:0002020!1.14e-08!34;UBERON:0003528!1.14e-08!34;UBERON:0009663!4.35e-08!7;UBERON:0002420!1.60e-07!9;UBERON:0007245!1.60e-07!9;UBERON:0010009!1.60e-07!9;UBERON:0010011!1.60e-07!9;UBERON:0000454!1.60e-07!9;UBERON:0002780!1.84e-07!41;UBERON:0001890!1.84e-07!41;UBERON:0006240!1.84e-07!41;UBERON:0002791!3.23e-07!33;UBERON:0003080!3.68e-07!42;UBERON:0001049!6.27e-07!57;UBERON:0005068!6.27e-07!57;UBERON:0006241!6.27e-07!57;UBERON:0007135!6.27e-07!57;UBERON:0001893!7.05e-07!34;UBERON:0001869!9.85e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.72e-18;9!UBERON:0001557;2.72e-18;9!UBERON:0002423;2.34e-10;25!UBERON:0002107;1.81e-08;19!UBERON:0006925;1.81e-08;19!UBERON:0002108;1.18e-07;4!UBERON:0000072;2.28e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.38e-18,9;UBERON:0004921,1.83e-10,118;UBERON:0009497,2.30e-10,25;UBERON:0000015,2.30e-10,25;UBERON:0002423,2.30e-10,25;UBERON:0006235,2.30e-10,25;UBERON:0004161,2.30e-10,25;UBERON:0001007,1.82e-09,145;UBERON:0001555,1.82e-09,145;UBERON:0007026,1.82e-09,145;UBERON:0001041,5.39e-09,87;UBERON:0002107,1.83e-08,19;UBERON:0006925,1.83e-08,19;UBERON:0008836,1.83e-08,19;UBERON:0001557,3.46e-08,19;UBERON:0004119,4.72e-08,160;UBERON:0000925,4.72e-08,160;UBERON:0006595,4.72e-08,160;UBERON:0007499,5.93e-08,25;UBERON:0011216,8.57e-08,223;UBERON:0002108,1.20e-07,4;UBERON:0009856,1.34e-07,26;UBERON:0008947,1.73e-07,38;UBERON:0003258,1.73e-07,38;UBERON:0008835,3.55e-07,22;UBERON:0003894,3.55e-07,22;UBERON:0009854,8.03e-07,23 | |||
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| ||
|short_description=p3@ONECUT2 | |||
}} | }} |
Latest revision as of 22:34, 19 September 2015
Short description: | p3@ONECUT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ONECUT2_5end |
Coexpression cluster: | NA |
Association with transcript: | -69bp_to_ENST00000262095, ENST00000491143, NM_004852, uc002lgo.2_5end |
EntrezGene: | ONECUT2 |
HGNC: | 8139 |
UniProt: | O95948 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.69e-10 | 12 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.38e-18 | 9 |
subdivision of digestive tract | 1.83e-10 | 118 |
epithelium of foregut-midgut junction | 2.30e-10 | 25 |
anatomical boundary | 2.30e-10 | 25 |
hepatobiliary system | 2.30e-10 | 25 |
foregut-midgut junction | 2.30e-10 | 25 |
septum transversum | 2.30e-10 | 25 |
digestive system | 1.82e-09 | 145 |
digestive tract | 1.82e-09 | 145 |
primitive gut | 1.82e-09 | 145 |
foregut | 5.39e-09 | 87 |
liver | 1.83e-08 | 19 |
digestive gland | 1.83e-08 | 19 |
liver bud | 1.83e-08 | 19 |
upper respiratory tract | 3.46e-08 | 19 |
endoderm-derived structure | 4.72e-08 | 160 |
endoderm | 4.72e-08 | 160 |
presumptive endoderm | 4.72e-08 | 160 |
epithelial sac | 5.93e-08 | 25 |
organ system subdivision | 8.57e-08 | 223 |
small intestine | 1.20e-07 | 4 |
sac | 1.34e-07 | 26 |
respiratory primordium | 1.73e-07 | 38 |
endoderm of foregut | 1.73e-07 | 38 |
hepatic diverticulum | 3.55e-07 | 22 |
liver primordium | 3.55e-07 | 22 |
digestive tract diverticulum | 8.03e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.42e-18 | 106 |
cell type cancer | 4.61e-18 | 143 |
cancer | 3.15e-14 | 235 |
disease of cellular proliferation | 9.60e-14 | 239 |