FFCP PHASE1:Hg19::chr17:9548820..9548840,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:9548820..9548840,+ to FFCP PHASE1:Hg19::chr17:9548820..9548840,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=124739 | |EntrezGene=124739 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20072 | |HGNC=20072 | ||
|TSSclassifier=strong | |||
|UniProt=Q70EL4 | |UniProt=Q70EL4 | ||
|association_with_transcript=-109bp_to_ENST00000285199,NM_153210,uc010cod.2,uc010vva.1_5end | |||
|cluster_id=chr17:9548820..9548840,+ | |||
|description=CAGE_peak_2_at_USP43_5end | |||
|id=chr17:9548820..9548840,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.12e-40!254;CL:0002076!3.81e-17!43;CL:0000223!1.44e-15!59;CL:0002368!1.55e-10!13;CL:0002202!1.96e-07!9;CL:0002632!1.96e-07!9;CL:0000082!7.87e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002368;5.65e-15;13!CL:0002076;1.81e-14;42!CL:0002202;2.57e-10;9!CL:0002632;2.57e-10;9!CL:1000497;4.34e-10;17!CL:0002518;4.34e-10;17!CL:1000507;3.10e-09;10!CL:1000494;3.10e-09;10!CL:1000449;3.74e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.30e-34,253;CL:0002076,6.66e-19,42;CL:0000223,2.81e-15,58;CL:0002368,5.33e-15,13;CL:0002202,2.32e-10,9;CL:0002632,2.32e-10,9;CL:1000497,5.16e-10,17;CL:0002518,5.16e-10,17;CL:1000507,2.20e-09,10;CL:1000494,2.20e-09,10;CL:1000449,3.94e-08,15 | |||
|ontology_enrichment_development_v019=CL:0000223;9.23e-09;58!UBERON:0008947;4.82e-08;29!UBERON:0006595;9.61e-07;86 | |||
|ontology_enrichment_disease=DOID:305!1.99e-29!106;DOID:0050687!1.15e-20!143;DOID:162!1.31e-10!235;DOID:14566!6.02e-10!239;DOID:299!8.49e-10!25;DOID:1749!1.31e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.44e-12;14!DOID:299;1.26e-07;25!DOID:305;3.19e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.29e-22,106;DOID:0050687,9.92e-18,143;DOID:1749,4.10e-12,14;DOID:299,1.65e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.54e-23!169;UBERON:0000925!1.54e-23!169;UBERON:0006595!1.54e-23!169;UBERON:0001007!1.18e-18!155;UBERON:0001555!1.18e-18!155;UBERON:0007026!1.18e-18!155;UBERON:0000064!3.06e-18!219;UBERON:0000062!7.24e-16!511;UBERON:0001004!1.26e-15!72;UBERON:0004921!2.28e-15!129;UBERON:0004185!2.28e-15!129;UBERON:0000481!3.30e-13!347;UBERON:0000065!4.15e-13!53;UBERON:0000077!4.62e-13!130;UBERON:0008947!1.87e-12!38;UBERON:0003258!1.87e-12!38;UBERON:0000464!1.96e-11!104;UBERON:0001041!5.00e-11!98;UBERON:0000466!5.91e-11!126;UBERON:0005911!6.11e-11!82;UBERON:0005177!8.91e-11!107;UBERON:0006554!1.51e-10!44;UBERON:0000072!2.51e-10!46;UBERON:0001008!5.01e-10!45;UBERON:0000063!6.98e-09!97;UBERON:0005178!1.12e-08!34;UBERON:0002224!1.12e-08!34;UBERON:0000922!1.39e-08!612;UBERON:0000058!1.59e-08!26;UBERON:0005153!2.31e-08!37;UBERON:0001048!2.78e-08!168;UBERON:0005181!3.76e-08!35;UBERON:0002113!8.00e-08!27;UBERON:0003918!8.00e-08!27;UBERON:0005095!8.00e-08!27;UBERON:0007687!8.00e-08!27;UBERON:0009569!8.45e-08!113;UBERON:0000467!1.94e-07!625;UBERON:0000468!2.04e-07!659;UBERON:0000475!2.36e-07!365;UBERON:0000480!2.56e-07!626;UBERON:0000153!3.23e-07!129;UBERON:0007811!3.23e-07!129;UBERON:0002050!3.82e-07!605;UBERON:0005423!3.82e-07!605;UBERON:0002048!4.43e-07!22;UBERON:0000117!4.43e-07!22;UBERON:0000171!4.43e-07!22;UBERON:0000170!4.43e-07!22;UBERON:0005597!4.43e-07!22;UBERON:0000118!4.43e-07!22;UBERON:0000033!4.59e-07!123;UBERON:0000923!5.25e-07!604;UBERON:0005291!5.25e-07!604;UBERON:0006598!5.25e-07!604;UBERON:0002532!5.25e-07!604;UBERON:0000489!7.47e-07!32;UBERON:0004802!7.87e-07!19;UBERON:0000115!7.87e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.21e-12;30!UBERON:0001008;1.21e-12;30!UBERON:0000065;2.38e-11;44!UBERON:0004211;3.10e-09;10!UBERON:0009773;3.10e-09;10!UBERON:0001231;3.10e-09;10!UBERON:0004810;3.10e-09;10!UBERON:0002113;3.26e-09;24!UBERON:0011143;3.26e-09;24!UBERON:0000072;3.91e-09;37!UBERON:0006555;3.74e-08;15!UBERON:0004819;3.74e-08;15!UBERON:0001285;3.74e-08;15!UBERON:0007684;3.74e-08;15!UBERON:0001004;5.19e-08;65!UBERON:0000489;1.03e-07;29!UBERON:0001737;1.42e-07;9!UBERON:0001557;1.42e-07;9!UBERON:0004807;4.66e-07;22!UBERON:0005178;8.25e-07;34!UBERON:0002224;8.25e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.51e-21,160;UBERON:0000925,1.51e-21,160;UBERON:0006595,1.51e-21,160;UBERON:0001007,2.44e-16,145;UBERON:0001555,2.44e-16,145;UBERON:0007026,2.44e-16,145;UBERON:0001004,1.93e-15,74;UBERON:0000065,2.66e-13,54;UBERON:0008947,8.63e-13,38;UBERON:0003258,8.63e-13,38;UBERON:0004921,8.90e-13,118;UBERON:0006554,1.03e-12,47;UBERON:0001008,2.92e-12,48;UBERON:0005177,2.96e-11,101;UBERON:0001041,3.85e-11,87;UBERON:0002113,1.48e-09,26;UBERON:0003918,1.48e-09,26;UBERON:0011143,1.48e-09,26;UBERON:0005095,1.48e-09,26;UBERON:0007687,1.48e-09,26;UBERON:0000072,1.86e-09,47;UBERON:0004810,2.20e-09,10;UBERON:0005911,1.30e-08,82;UBERON:0009569,1.88e-08,112;UBERON:0000489,3.92e-08,31;UBERON:0004211,3.94e-08,15;UBERON:0009773,3.94e-08,15;UBERON:0001231,3.94e-08,15;UBERON:0001285,3.94e-08,15;UBERON:0007684,3.94e-08,15;UBERON:0004208,3.94e-08,15;UBERON:0005178,1.33e-07,34;UBERON:0002224,1.33e-07,34;UBERON:0001737,1.33e-07,9;UBERON:0006555,1.99e-07,16;UBERON:0004819,1.99e-07,16;UBERON:0005181,3.10e-07,35;UBERON:0005153,4.23e-07,37;UBERON:0001048,9.14e-07,160;UBERON:0011216,9.33e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,1.47440361900905,9.07141518364156,0.873765488520689,1.84636884759917,0,0,0,0,0,0,1.35433163884467,1.02000345622126,0.313454721478088,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,6.43594857135249,2.71085326900425,5.9160641626686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0.722878304769133,0,0.144846518960824,0,0,0.850813354476611,1.55210578223795,1.40535657109002,1.11332214173056,3.27865759463288,3.70784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23312862571041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0.280901613404497,0,0.122834317311768,0,1.18800285728205,0.247266929278557,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,3.86521706326594,2.18196896472668,1.43402297694502,1.34171076742555,1.45782745153634,1.39432731443422,1.14027160516907,1.00928340350251,0,0,1.28648187638577,0,0,0,1.65629520055781,2.69735504124963,1.20505514941741,1.43382164552112,1.52515610864684,2.84724742933316,2.29213223872279,1.17732879075208,1.53898862778556,0,0,0,0,0,2.94848165003288,5.31710916013264,0,0.983907508344908,0.514703430895577,3.07300799144152,4.49607013030478,2.11110842064425,1.94435734832912,0,0,0,0.927443239800615,0.117408694235822,0,0,0,2.37061319387782,3.43394464837949,0,0,0.148631162288728,0.93733833986777,1.84780341018745,1.70130116690864,1.61205340865127,2.03443756959773,2.30029607499127,0,0.088048434013226,0.829312462163088,0,0.25248486685276,0,0,0,0,0.102827492703324,0,0.285826432630578,0.336393253036082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.499864955910285,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,1.66435439510497,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,3.60911646545913,4.69613043573071,0,0,0,3.60959690325929,2.77255213575893,6.27479815341484,8.76835347919564,3.4832037534649,0,0,1.0795795805107,0,1.35473218771926,2.50844886927427,6.11703055308092,0.831076008928724,2.91037181138832,0,0,0.512900250232778,0.656029291399411,0.325378394664303,2.88514832613622,0,0,2.29706215198469,1.95018073810956,0,0,0,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,0,4.29740779938543,4.61256161676255,8.55005173713714,4.6532579193553,0,0,0,0,0,0,0,0,1.116475108079,0,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0.975267478179181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,2.79044126903985,6.03272047982209,6.53345909167936,2.44773882019626,4.3050537267123,5.05414427002877,3.99087138183008,2.29723400206959,0,0,0,0,0,0,0,0,0.534120355637366,0,6.61608583148786,0,0.144269212976445,0,0,0,0,0,0,0,0.456469358066384,0,0,0,0.1605880751037,0,0.425846237690326,0.343505344755765,0,0.447352215784832,0.166849141711909,0,0,0,0,0,0,6.36277837387947,0,0.121360521749513,0.111443384277478,1.13654458722565,0.47748896947538,0.890894042497916,0.307160702099232,0,0.140669416410513,1.55832187032068,0.824019371133798,1.47787785689595,0.398495976502139,0.276283915531148,0.251932747854276,0,0,0,2.3365771298305,1.9692329214317,0,0.690503839458535,0,0,0,0.74214478529481,1.99613798001194,1.5625665665114,0.349839999984783,0.724999575434793,2.61724931056649,3.81380475439149,5.67330436243047,0,0,0.347249989866585,0,0.241192877250816,0,0,0.295547618953547,0.87754158861589,1.0893846351899,1.67308493134324,0.461701551022782,0.113942055847001,1.84451123510448,2.15418346583453,2.7161842980502,6.06102203490647,1.74035427463538,2.66517388009317,0,0,0,0,0,0.167821586975843,0,0.158936578980379,2.10998064528027,0.816164040795739,0.424059214301822,0.216388639742091,0.995261931078505,3.71521770914025,2.4441205797345,0,0.123563938946503,0,0.134802265961354,0,0,0,3.13063390291344,0,1.97292201424695,1.20990716048664,0.30607276163049,0.189559738885464,1.9542044523884,0.311064574191741,0,0.330991955875499,1.2557316736289,0,1.13843818411917,0.277349346026277,2.95051555169723,1.37189356380129,3.04707223031409,0.52418000472609,2.57979048707425,1.06431964417994,1.09633975629278,0.903270027585302,1.35784623083787,0,0.677942222341597,0,0.19871461170299,1.83601308272048,4.69323318563527,2.64524106830061,1.28071796843612,0,1.72908500584927,0.229073192331831,0,0,0.248505071130865,4.24249262310232,0.271808412147228,0.104602846312333,0.101998217636322,0,0,0.136905378891993,0,0,0,0,0,0,3.39454300848285,0,0,0.0671834724867263,0,0,0.236349546921671,0.0824158583811665,0.13480708770837,0.295282444544246,0,0.795229689809303,0.136203406111576,2.25054407851027,2.47570985875021,0.83088067605837,0.449947783103001,3.0952078182318,1.76173714308272,5.70238968918752,1.49730843868477,2.15063811353492,0.316801009558219,1.25501137532991,2.30298236783334,0,0,0,0,0,0,0,0,0,0,2.4913879725274,0,0.258565912723101,0,0.342173675768659,2.81926008926669,1.81538601365081,1.88645166119599,0,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| ||
|short_description=p2@USP43 | |||
}} | }} |
Latest revision as of 16:59, 18 September 2015
Short description: | p2@USP43 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_USP43_5end |
Coexpression cluster: | NA |
Association with transcript: | -109bp_to_ENST00000285199, NM_153210, uc010cod.2, uc010vva.1_5end |
EntrezGene: | USP43 |
HGNC: | 20072 |
UniProt: | Q70EL4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.30e-34 | 253 |
endo-epithelial cell | 6.66e-19 | 42 |
endodermal cell | 2.81e-15 | 58 |
respiratory epithelial cell | 5.33e-15 | 13 |
epithelial cell of tracheobronchial tree | 2.32e-10 | 9 |
epithelial cell of lower respiratory tract | 2.32e-10 | 9 |
kidney cell | 5.16e-10 | 17 |
kidney epithelial cell | 5.16e-10 | 17 |
kidney tubule cell | 2.20e-09 | 10 |
nephron tubule epithelial cell | 2.20e-09 | 10 |
epithelial cell of nephron | 3.94e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.29e-22 | 106 |
cell type cancer | 9.92e-18 | 143 |
squamous cell carcinoma | 4.10e-12 | 14 |
adenocarcinoma | 1.65e-07 | 25 |