FFCP PHASE1:Hg19::chr17:38645025..38645036,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:38645025..38645036,- to FFCP PHASE1:Hg19::chr17:38645025..38645036,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84951 | |EntrezGene=84951 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=24352 | |HGNC=24352 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IZW8 | |UniProt=Q8IZW8 | ||
|association_with_transcript=135bp_to_AK027856_5end | |||
|cluster_id=chr17:38645025..38645036,- | |||
|coexpression_cluster_id=C436 | |||
|description=CAGE_peak_5_at_TNS4_5end | |||
|id=chr17:38645025..38645036,- | |||
|ontology_enrichment_celltype=CL:0000066!2.60e-28!254;CL:0002076!1.07e-26!43;CL:0000223!1.98e-23!59;CL:0002368!8.31e-19!13;CL:0002159!5.03e-13!13;CL:0002202!1.72e-11!9;CL:0002632!1.72e-11!9;CL:0002251!1.87e-11!21;CL:0000244!1.23e-09!4;CL:0000731!1.23e-09!4;CL:0000622!7.05e-08!5;CL:0002328!9.88e-08!3;CL:0000068!1.63e-07!3;CL:0000069!1.63e-07!3;CL:0000307!1.63e-07!3;CL:0000377!1.63e-07!3;CL:0000362!2.30e-07!8;CL:0002541!4.95e-07!3;CL:0000349!5.06e-07!3;CL:0002577!5.06e-07!3;CL:0002621!8.42e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.12e-32;13!CL:0002076;2.98e-24;42!CL:0002159;7.42e-20;14!CL:0000244;4.24e-18;4!CL:0000731;4.24e-18;4!CL:0002202;1.51e-17;9!CL:0002632;1.51e-17;9!CL:0000622;5.15e-15;5!CL:0002328;2.05e-14;3!CL:0000307;5.73e-14;3!CL:0000362;6.50e-13;9!CL:0000240;1.54e-12;6!CL:0000311;1.54e-12;6!CL:0000079;1.54e-12;6!CL:0000237;1.54e-12;6!CL:0000154;1.58e-12;6!CL:0000317;1.03e-10;2!CL:1000448;1.03e-10;2!CL:0002308;1.03e-10;2!CL:0002140;1.03e-10;2!CL:0000349;2.32e-10;19!CL:0000575;3.19e-10;2!CL:0002536;1.31e-09;2!CL:0000312;6.87e-09;5!CL:0000150;2.30e-08;9!CL:0002251;2.07e-07;20!CL:0002231;4.13e-07;3!CL:0002077;7.35e-07;34!CL:0002623;8.79e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,4.69e-32,13;CL:0002076,5.98e-30,42;CL:0000066,3.61e-21,253;CL:0000223,1.66e-20,58;CL:0002159,7.08e-20,14;CL:0000244,2.92e-18,4;CL:0000731,2.92e-18,4;CL:0002202,1.97e-17,9;CL:0002632,1.97e-17,9;CL:0000622,4.55e-15,5;CL:0002328,2.52e-14,3;CL:0000068,7.01e-14,3;CL:0000069,7.01e-14,3;CL:0000307,7.01e-14,3;CL:0000377,7.01e-14,3;CL:0000362,6.27e-13,9;CL:0000240,1.35e-12,6;CL:0000311,1.35e-12,6;CL:0000079,1.35e-12,6;CL:0000237,1.35e-12,6;CL:0000036,1.35e-12,6;CL:0000357,1.35e-12,6;CL:0000114,1.35e-12,6;CL:0000154,1.43e-12,6;CL:0000317,1.11e-10,2;CL:1000448,1.11e-10,2;CL:0002308,1.11e-10,2;CL:0002140,1.11e-10,2;CL:0000349,2.38e-10,19;CL:0000575,3.35e-10,2;CL:0002536,1.81e-09,2;CL:0000312,6.35e-09,5;CL:0000150,2.15e-08,9;CL:0002251,2.04e-07,20;CL:0002077,2.10e-07,34;CL:0002231,3.72e-07,3;CL:0002623,7.60e-07,3;CL:0002321,9.93e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000377;5.73e-14;3!CL:0000357;1.54e-12;6!CL:0000114;1.54e-12;6!CL:0000223;1.36e-11;58 | |||
|ontology_enrichment_disease=DOID:305!1.82e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!6.79e-29!72;UBERON:0004119!5.99e-26!169;UBERON:0000925!5.99e-26!169;UBERON:0006595!5.99e-26!169;UBERON:0000065!5.06e-21!53;UBERON:0008947!2.91e-18!38;UBERON:0003258!2.91e-18!38;UBERON:0001737!3.78e-17!9;UBERON:0005631!2.62e-16!14;UBERON:0000158!2.62e-16!14;UBERON:0000072!9.12e-16!46;UBERON:0001007!2.30e-15!155;UBERON:0001555!2.30e-15!155;UBERON:0007026!2.30e-15!155;UBERON:0000077!1.06e-14!130;UBERON:0001041!3.41e-14!98;UBERON:0003124!6.73e-14!7;UBERON:0004921!1.37e-12!129;UBERON:0004185!1.37e-12!129;UBERON:0000166!2.50e-11!21;UBERON:0007196!5.37e-11!14;UBERON:0001558!5.37e-11!14;UBERON:0001557!1.01e-10!19;UBERON:0003729!6.65e-10!5;UBERON:0000161!1.61e-09!35;UBERON:0000165!2.06e-09!28;UBERON:0000930!2.06e-09!28;UBERON:0005178!1.29e-08!34;UBERON:0002224!1.29e-08!34;UBERON:0001987!1.58e-08!4;UBERON:0004340!1.58e-08!4;UBERON:0000064!1.70e-08!219;UBERON:0000478!2.13e-08!24;UBERON:0005181!2.84e-08!35;UBERON:0000062!4.08e-08!511;UBERON:0003343!7.26e-08!4;UBERON:0004785!7.26e-08!4;UBERON:0004815!9.88e-08!3;UBERON:0002031!9.88e-08!3;UBERON:0000365!1.13e-07!5;UBERON:0001048!1.24e-07!168;UBERON:0003126!1.91e-07!7;UBERON:0001005!1.91e-07!7;UBERON:0003102!2.82e-07!95;UBERON:0000476!4.95e-07!3;UBERON:0000920!4.95e-07!3;UBERON:0002365!4.98e-07!31;UBERON:0002330!4.98e-07!31;UBERON:0004923!5.26e-07!57;UBERON:0000344!5.65e-07!12;UBERON:0005911!7.90e-07!82;UBERON:0001949!8.42e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.66e-14;5!UBERON:0004815;2.05e-14;3!UBERON:0002031;2.05e-14;3!UBERON:0000065;1.68e-13;44!UBERON:0005910;4.16e-12;6!UBERON:0005631;6.21e-11;10!UBERON:0000158;6.21e-11;10!UBERON:0002419;1.03e-10;2!UBERON:0007771;1.03e-10;2!UBERON:0003297;1.03e-10;2!UBERON:0001821;1.03e-10;2!UBERON:0003487;1.03e-10;2!UBERON:0001820;1.03e-10;2!UBERON:0001003;1.62e-10;15!UBERON:0007376;1.62e-10;15!UBERON:0007196;2.83e-10;15!UBERON:0001558;2.83e-10;15!UBERON:0000305;3.30e-10;7!UBERON:0000486;5.63e-09;12!UBERON:0000072;6.78e-09;37!UBERON:0002185;7.95e-09;5!UBERON:0000478;5.24e-08;24!UBERON:0001004;1.24e-07;65!UBERON:0001737;1.31e-07;9!UBERON:0001557;1.31e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,1.48e-16,74;UBERON:0004119,3.99e-16,160;UBERON:0000925,3.99e-16,160;UBERON:0006595,3.99e-16,160;UBERON:0000365,1.23e-14,5;UBERON:0000065,1.47e-14,54;UBERON:0005631,2.21e-14,14;UBERON:0000158,2.21e-14,14;UBERON:0004815,2.52e-14,3;UBERON:0002031,2.52e-14,3;UBERON:0005910,3.26e-12,6;UBERON:0002419,1.11e-10,2;UBERON:0007771,1.11e-10,2;UBERON:0003297,1.11e-10,2;UBERON:0001821,1.11e-10,2;UBERON:0003487,1.11e-10,2;UBERON:0001820,1.11e-10,2;UBERON:0005089,1.11e-10,2;UBERON:0005088,1.11e-10,2;UBERON:0001003,1.57e-10,15;UBERON:0007376,1.57e-10,15;UBERON:0007383,1.57e-10,15;UBERON:0007196,3.29e-10,15;UBERON:0001558,3.29e-10,15;UBERON:0000305,4.06e-10,7;UBERON:0008947,1.49e-09,38;UBERON:0003258,1.49e-09,38;UBERON:0003102,3.81e-09,99;UBERON:0000072,6.26e-09,47;UBERON:0004871,7.30e-09,8;UBERON:0002185,8.97e-09,5;UBERON:0000478,5.33e-08,24;UBERON:0001737,1.41e-07,9;UBERON:0001041,9.24e-07,87 | |||
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| ||
|short_description=p5@TNS4 | |||
}} | }} |
Latest revision as of 02:13, 20 September 2015
Short description: | p5@TNS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TNS4_5end |
Coexpression cluster: | C436_Sebocyte_Prostate_Keratinocyte_Urothelial_Small_Mammary_salivary |
Association with transcript: | 135bp_to_AK027856_5end |
EntrezGene: | TNS4 |
HGNC: | 24352 |
UniProt: | Q8IZW8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory system | 1.48e-16 | 74 |
endoderm-derived structure | 3.99e-16 | 160 |
endoderm | 3.99e-16 | 160 |
presumptive endoderm | 3.99e-16 | 160 |
urothelium | 1.23e-14 | 5 |
respiratory tract | 1.47e-14 | 54 |
extraembryonic membrane | 2.21e-14 | 14 |
membranous layer | 2.21e-14 | 14 |
lower respiratory tract epithelium | 2.52e-14 | 3 |
epithelium of bronchus | 2.52e-14 | 3 |
transitional epithelium | 3.26e-12 | 6 |
skin gland | 1.11e-10 | 2 |
epidermis gland | 1.11e-10 | 2 |
gland of integumental system | 1.11e-10 | 2 |
sebaceous gland | 1.11e-10 | 2 |
skin sebaceous gland | 1.11e-10 | 2 |
sweat gland | 1.11e-10 | 2 |
sweat gland placode | 1.11e-10 | 2 |
sebaceous gland placode | 1.11e-10 | 2 |
skin epidermis | 1.57e-10 | 15 |
outer epithelium | 1.57e-10 | 15 |
enveloping layer of ectoderm | 1.57e-10 | 15 |
tracheobronchial tree | 3.29e-10 | 15 |
lower respiratory tract | 3.29e-10 | 15 |
amnion | 4.06e-10 | 7 |
respiratory primordium | 1.49e-09 | 38 |
endoderm of foregut | 1.49e-09 | 38 |
surface structure | 3.81e-09 | 99 |
segment of respiratory tract | 6.26e-09 | 47 |
somatic layer of lateral plate mesoderm | 7.30e-09 | 8 |
bronchus | 8.97e-09 | 5 |
extraembryonic structure | 5.33e-08 | 24 |
larynx | 1.41e-07 | 9 |
foregut | 9.24e-07 | 87 |