FFCP PHASE1:Hg19::chr16:55690161..55690189,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6530 | |EntrezGene=6530 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11048 | |HGNC=11048 | ||
|TSSclassifier=strong | |||
|UniProt=P23975,B4DX48 | |UniProt=P23975,B4DX48 | ||
|association_with_transcript=-162bp_to_ENST00000379906,NM_001043_5end | |||
|cluster_id=chr16:55690161..55690189,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_3_at_SLC6A2_5end | |||
|id=chr16:55690161..55690189,+ | |||
|ontology_enrichment_celltype=CL:0002541!4.14e-14!3 | |||
|ontology_enrichment_celltype_v019=CL:0002541;7.93e-55;3!CL:0000349;1.29e-15;19!CL:0000307;3.25e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.02e-55,3;CL:0000349,1.19e-15,19;CL:0000068,3.35e-07,3;CL:0000069,3.35e-07,3;CL:0000307,3.35e-07,3;CL:0000377,3.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;8.95e-20;1!UBERON:0007297;3.42e-10;2!CL:0000377;3.25e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!9.19e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000476!4.14e-14!3;UBERON:0000920!4.14e-14!3;UBERON:0001723!1.06e-12!3;UBERON:0001033!1.06e-12!3;UBERON:0010056!1.06e-12!3;UBERON:0003124!1.87e-10!7;UBERON:0003127!5.99e-09!2;UBERON:0005631!9.75e-08!14;UBERON:0000158!9.75e-08!14;UBERON:0007023!4.15e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;7.93e-55;3!UBERON:0000920;7.93e-55;3!UBERON:0005631;2.94e-29;10!UBERON:0000158;2.94e-29;10!UBERON:0000478;5.03e-19;24!UBERON:0001301;5.13e-19;1!UBERON:0006947;3.25e-07;3!UBERON:0004054;3.25e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.02e-55,3;UBERON:0003124,6.46e-42,7;UBERON:0005631,1.67e-32,14;UBERON:0000158,1.67e-32,14;UBERON:0000478,4.66e-19,24;UBERON:0001301,4.69e-19,1;UBERON:0006947,3.16e-07,3;UBERON:0004054,3.16e-07,3;UBERON:0004923,5.70e-07,66 | |||
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| ||
|short_description=p3@SLC6A2 | |||
}} | }} |
Latest revision as of 00:37, 17 September 2015
Short description: | p3@SLC6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC6A2_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | -162bp_to_ENST00000379906, NM_001043_5end |
EntrezGene: | SLC6A2 |
HGNC: | 11048 |
UniProt: | P23975B4DX48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.02e-55 | 3 |
extraembryonic cell | 1.19e-15 | 19 |
duct epithelial cell | 3.35e-07 | 3 |
branched duct epithelial cell | 3.35e-07 | 3 |
tracheal epithelial cell | 3.35e-07 | 3 |
tracheoblast | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 6.02e-55 | 3 |
chorion | 6.46e-42 | 7 |
extraembryonic membrane | 1.67e-32 | 14 |
membranous layer | 1.67e-32 | 14 |
extraembryonic structure | 4.66e-19 | 24 |
epididymis | 4.69e-19 | 1 |
male genital duct | 3.16e-07 | 3 |
internal male genitalia | 3.16e-07 | 3 |
organ component layer | 5.70e-07 | 66 |