FFCP PHASE1:Hg19::chr15:78913353..78913365,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:78913353..78913365,- to FFCP PHASE1:Hg19::chr15:78913353..78913365,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1136 | |EntrezGene=1136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1957 | |HGNC=1957 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-31bp_to_uc002bea.2,uc002beb.2,uc002bec.2_5end | |||
|cluster_id=chr15:78913353..78913365,- | |||
|coexpression_cluster_id=C1753 | |||
|description=CAGE_peak_3_at_CHRNA3_5end | |||
|id=chr15:78913353..78913365,- | |||
|ontology_enrichment_celltype=CL:0002322!5.28e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0002321;1.81e-10;15!CL:0000123;2.07e-10;2!CL:0000242;2.07e-10;2!CL:0000333;1.96e-09;5!CL:0002322;2.89e-08;5!CL:0002586;6.65e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.93e-10,2;CL:0002322,3.60e-08,5;CL:0002586,6.75e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.22e-07;3!UBERON:0006215;3.87e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;6.35e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,6.35e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0003075!9.52e-30!86;UBERON:0007284!9.52e-30!86;UBERON:0002346!1.03e-27!90;UBERON:0000073!9.87e-25!94;UBERON:0001016!9.87e-25!94;UBERON:0005743!4.23e-24!86;UBERON:0007023!4.71e-23!115;UBERON:0001017!3.32e-20!82;UBERON:0001049!4.33e-20!57;UBERON:0005068!4.33e-20!57;UBERON:0006241!4.33e-20!57;UBERON:0007135!4.33e-20!57;UBERON:0003056!1.71e-18!61;UBERON:0004121!2.31e-17!169;UBERON:0000924!1.50e-16!173;UBERON:0006601!1.50e-16!173;UBERON:0002616!1.82e-16!59;UBERON:0000955!7.58e-16!69;UBERON:0006238!7.58e-16!69;UBERON:0002780!3.09e-14!41;UBERON:0001890!3.09e-14!41;UBERON:0006240!3.09e-14!41;UBERON:0000153!4.86e-14!129;UBERON:0007811!4.86e-14!129;UBERON:0003080!9.83e-14!42;UBERON:0000033!1.08e-12!123;UBERON:0001894!7.43e-11!7;UBERON:0006222!7.43e-11!7;UBERON:0000966!1.26e-08!5;UBERON:0005388!1.26e-08!5;UBERON:0001802!1.26e-08!5;UBERON:0002020!5.34e-08!34;UBERON:0003528!5.34e-08!34;UBERON:0001893!6.66e-08!34;UBERON:0003076!9.38e-08!15;UBERON:0003057!9.38e-08!15;UBERON:0001869!1.48e-07!32;UBERON:0002420!1.60e-07!9;UBERON:0007245!1.60e-07!9;UBERON:0010009!1.60e-07!9;UBERON:0010011!1.60e-07!9;UBERON:0000454!1.60e-07!9;UBERON:0003296!2.28e-07!4;UBERON:0010133!2.28e-07!4;UBERON:0002791!2.49e-07!33;UBERON:0007625!2.59e-07!11;UBERON:0002308!3.62e-07!9;UBERON:0000125!3.62e-07!9;UBERON:0000970!4.87e-07!20;UBERON:0000063!9.05e-07!97 | |||
|ontology_enrichment_uberon_v019=UBERON:0001894;3.39e-16;7!UBERON:0000966;6.03e-15;5!UBERON:0005388;6.03e-15;5!UBERON:0001802;6.03e-15;5!UBERON:0003296;3.90e-11;4!UBERON:0010133;3.90e-11;4!UBERON:0002784;3.90e-11;4!UBERON:0001905;8.47e-11;2!UBERON:0002757;8.47e-11;2!UBERON:0010134;8.47e-11;2!UBERON:0005408;8.47e-11;2!UBERON:0001899;8.47e-11;2!UBERON:0002370;1.53e-10;2!UBERON:0005058;1.53e-10;2!UBERON:0009113;1.53e-10;2!UBERON:0000013;1.96e-09;5!UBERON:0002410;1.96e-09;5!UBERON:0001781;6.65e-07;3!UBERON:0001782;6.65e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001894,3.29e-16,7;UBERON:0006222,3.29e-16,7;UBERON:0000966,1.96e-12,6;UBERON:0005388,1.96e-12,6;UBERON:0001802,1.96e-12,6;UBERON:0002784,3.41e-11,4;UBERON:0003296,4.18e-11,4;UBERON:0010133,4.18e-11,4;UBERON:0001905,8.28e-11,2;UBERON:0002757,8.28e-11,2;UBERON:0010134,8.28e-11,2;UBERON:0005408,8.28e-11,2;UBERON:0001899,8.28e-11,2;UBERON:0000013,1.96e-09,5;UBERON:0002410,1.96e-09,5;UBERON:0003075,7.76e-09,82;UBERON:0007284,7.76e-09,82;UBERON:0010371,1.53e-08,104;UBERON:0002346,2.76e-08,86;UBERON:0003056,5.86e-08,61;UBERON:0001016,8.63e-08,89;UBERON:0001782,6.75e-07,3;UBERON:0005424,6.75e-07,3;UBERON:0005383,9.92e-07,3;UBERON:0005382,9.92e-07,3 | |||
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| ||
|short_description=p3@CHRNA3 | |||
}} | }} |
Latest revision as of 07:12, 19 September 2015
Short description: | p3@CHRNA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CHRNA3_5end |
Coexpression cluster: | C1753_neuroblastoma_pineal_rectum_retina_merkel_carcinosarcoma_eye |
Association with transcript: | -31bp_to_uc002bea.2, uc002beb.2, uc002bec.2_5end |
EntrezGene: | CHRNA3 |
HGNC: | 1957 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.93e-10 | 2 |
embryonic stem cell | 3.60e-08 | 5 |
retinal pigment epithelial cell | 6.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
diencephalon | 3.29e-16 | 7 |
future diencephalon | 3.29e-16 | 7 |
retina | 1.96e-12 | 6 |
photoreceptor array | 1.96e-12 | 6 |
posterior segment of eyeball | 1.96e-12 | 6 |
regional part of diencephalon | 3.41e-11 | 4 |
gland of diencephalon | 4.18e-11 | 4 |
neuroendocrine gland | 4.18e-11 | 4 |
pineal body | 8.28e-11 | 2 |
regional part of epithalamus | 8.28e-11 | 2 |
secretory circumventricular organ | 8.28e-11 | 2 |
circumventricular organ | 8.28e-11 | 2 |
epithalamus | 8.28e-11 | 2 |
sympathetic nervous system | 1.96e-09 | 5 |
autonomic nervous system | 1.96e-09 | 5 |
neural plate | 7.76e-09 | 82 |
presumptive neural plate | 7.76e-09 | 82 |
ecto-epithelium | 1.53e-08 | 104 |
neurectoderm | 2.76e-08 | 86 |
pre-chordal neural plate | 5.86e-08 | 61 |
nervous system | 8.63e-08 | 89 |
pigmented layer of retina | 6.75e-07 | 3 |
presumptive retinal pigmented epithelium | 6.75e-07 | 3 |
caudate-putamen | 9.92e-07 | 3 |
dorsal striatum | 9.92e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 6.35e-08 | 6 |