FFCP PHASE1:Hg19::chr14:22994432..22994449,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:22994432..22994449,+ to FFCP PHASE1:Hg19::chr14:22994432..22994449,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-169bp_to_uc001wfw.1_5end | |||
|cluster_id=chr14:22994432..22994449,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_uc001wfw.1_5end | |||
|id=chr14:22994432..22994449,+ | |||
|ontology_enrichment_celltype=CL:0000838!4.86e-35!52;CL:0000542!3.34e-34!53;CL:0000051!3.34e-34!53;CL:0000791!3.61e-31!18;CL:0000789!3.61e-31!18;CL:0002420!3.61e-31!18;CL:0002419!3.61e-31!18;CL:0000790!3.61e-31!18;CL:0000084!3.36e-27!25;CL:0000827!3.36e-27!25;CL:0000625!1.59e-20!11;CL:0002087!1.37e-18!119;CL:0000738!2.13e-18!140;CL:0000624!1.88e-14!6;CL:0002031!3.84e-14!124;CL:0000037!6.51e-13!172;CL:0000566!6.51e-13!172;CL:0000988!2.25e-12!182;CL:0002032!2.45e-11!165;CL:0000837!2.45e-11!165;CL:0000898!1.71e-08!3;CL:0000945!1.98e-07!24;CL:0000826!1.98e-07!24;CL:0000842!2.48e-07!3;CL:0000623!3.47e-07!3;CL:0000825!3.47e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;8.88e-35;18!CL:0000789;8.88e-35;18!CL:0002419;8.88e-35;18!CL:0000084;3.11e-29;25!CL:0000625;1.81e-23;11!CL:0000898;1.28e-17;3!CL:0000624;4.20e-15;6!CL:0000815;3.70e-12;2!CL:0000792;3.70e-12;2!CL:0002677;3.70e-12;2!CL:0000542;1.22e-09;53!CL:0000895;3.57e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.76e-35,18;CL:0000789,5.76e-35,18;CL:0002420,5.76e-35,18;CL:0002419,5.76e-35,18;CL:0000790,5.76e-35,18;CL:0000084,2.13e-29,25;CL:0000827,2.13e-29,25;CL:0000625,1.00e-23,11;CL:0000898,1.36e-17,3;CL:0000838,2.85e-15,52;CL:0000624,4.87e-15,6;CL:0000542,6.19e-15,53;CL:0000051,6.19e-15,53;CL:0000815,4.39e-12,2;CL:0000792,4.39e-12,2;CL:0002677,4.39e-12,2;CL:0000810,3.17e-07,1;CL:0000895,3.17e-07,1;CL:0002436,3.17e-07,1;CL:0002427,3.17e-07,1;CL:0002428,3.17e-07,1;CL:0002429,3.17e-07,1;CL:0002433,3.17e-07,1;CL:0002431,3.17e-07,1;CL:0002432,3.17e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000790;8.88e-35;18!CL:0000051;1.22e-09;53!CL:0002427;3.57e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;6.95e-07;1!DOID:0060061;6.95e-07;1!DOID:8691;6.95e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,6.38e-07,1;DOID:0060061,6.38e-07,1;DOID:8691,6.38e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!7.19e-11!15;UBERON:0000179!7.19e-11!15;UBERON:0000463!7.19e-11!15;UBERON:0004177!2.22e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;7.05e-12;2!UBERON:0005058;7.05e-12;2!UBERON:0009113;7.05e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.07e-13,4;UBERON:0005058,3.07e-13,4;UBERON:0009113,3.07e-13,4;UBERON:0003295,3.07e-13,4;UBERON:0005562,3.07e-13,4;UBERON:0001042,4.86e-09,10;UBERON:0009145,4.86e-09,10;UBERON:0003351,5.48e-09,6;UBERON:0006562,3.16e-08,11;UBERON:0004177,9.12e-08,7;UBERON:0005057,9.12e-08,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0.786728553697808,0,0.309632246632152,0,0,0,0,0.284338464974843,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,2.18455444504853,0.889509253863555,0.853460445133014,0.400395987036012,0,0.661044872784862,0,0,0,0,0,0.560508562981536,0,1.180258620683,0.786021525498329,0.411202997999018,7.02183280640848,4.88883399950386,4.73447805734733,5.84480185223734,5.9047542149142,1.17842362989935,2.43687284041983,4.33286182024025,3.84273959177025,2.86130564631732,3.12432018746985,3.86890024900188,7.24507714337631,5.19002971067211,4.0131124213457,6.27213142829861,3.85251765171725,4.98186641682498,1.03088233644789,4.80737414837055,2.86708872891687,1.30216690771284,0.950452044448374,1.80690142893327,2.55973222308837,4.99722906209383,1.65744076430812,1.64225599384209,0.201606743224732,0,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.431255149719035,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.431428401637234,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,2.02979043692868,0,0,1.42939065274673,1.23408681925858,0.648473311192717,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992332043623902,0,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,2.59983614611409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0.576169937778896,0,0,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.375935671919414,0.128915775947154,0,0,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51896748360424,1.67601728598816,0,0,0,0,0,1.21233695426258,0,0,0,0,0,0,0,0,0,0,0.603821380773079,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0.786728553697808,0,0.309632246632152,0,0,0,0,0.284338464974843,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,2.18455444504853,0.889509253863555,0.853460445133014,0.400395987036012,0,0.661044872784862,0,0,0,0,0,0.560508562981536,0,1.180258620683,0.786021525498329,0.411202997999018,7.02183280640848,4.88883399950386,4.73447805734733,5.84480185223734,5.9047542149142,1.17842362989935,2.43687284041983,4.33286182024025,3.84273959177025,2.86130564631732,3.12432018746985,3.86890024900188,7.24507714337631,5.19002971067211,4.0131124213457,6.27213142829861,3.85251765171725,4.98186641682498,1.03088233644789,4.80737414837055,2.86708872891687,1.30216690771284,0.950452044448374,1.80690142893327,2.55973222308837,4.99722906209383,1.65744076430812,1.64225599384209,0.201606743224732,0,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.431255149719035,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.431428401637234,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,2.02979043692868,0,0,1.42939065274673,1.23408681925858,0.648473311192717,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992332043623902,0,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,2.59983614611409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0.576169937778896,0,0,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.375935671919414,0.128915775947154,0,0,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51896748360424,1.67601728598816,0,0,0,0,0,1.21233695426258,0,0,0,0,0,0,0,0,0,0,0.603821380773079,0.320568492303233 | ||
|short_description=p2@uc001wfw.1 | |||
}} | }} |
Latest revision as of 19:15, 24 July 2015
Short description: | p2@uc001wfw.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc001wfw.1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -169bp_to_uc001wfw.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.76e-35 | 18 |
alpha-beta T cell | 5.76e-35 | 18 |
immature T cell | 5.76e-35 | 18 |
mature T cell | 5.76e-35 | 18 |
immature alpha-beta T cell | 5.76e-35 | 18 |
T cell | 2.13e-29 | 25 |
pro-T cell | 2.13e-29 | 25 |
CD8-positive, alpha-beta T cell | 1.00e-23 | 11 |
naive T cell | 1.36e-17 | 3 |
lymphoid lineage restricted progenitor cell | 2.85e-15 | 52 |
CD4-positive, alpha-beta T cell | 4.87e-15 | 6 |
lymphocyte | 6.19e-15 | 53 |
common lymphoid progenitor | 6.19e-15 | 53 |
regulatory T cell | 4.39e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.39e-12 | 2 |
naive regulatory T cell | 4.39e-12 | 2 |
CD4-positive, alpha-beta thymocyte | 3.17e-07 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 3.17e-07 | 1 |
mature CD4 single-positive thymocyte | 3.17e-07 | 1 |
resting double-positive thymocyte | 3.17e-07 | 1 |
double-positive blast | 3.17e-07 | 1 |
CD69-positive double-positive thymocyte | 3.17e-07 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 3.17e-07 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 3.17e-07 | 1 |
CD24-positive, CD4 single-positive thymocyte | 3.17e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.07e-13 | 4 |
hemolymphoid system gland | 3.07e-13 | 4 |
thymic region | 3.07e-13 | 4 |
pharyngeal gland | 3.07e-13 | 4 |
thymus primordium | 3.07e-13 | 4 |
chordate pharynx | 4.86e-09 | 10 |
pharyngeal region of foregut | 4.86e-09 | 10 |
pharyngeal epithelium | 5.48e-09 | 6 |
pharynx | 3.16e-08 | 11 |
hemopoietic organ | 9.12e-08 | 7 |
immune organ | 9.12e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 6.38e-07 | 1 |
cutaneous T cell lymphoma | 6.38e-07 | 1 |
mycosis fungoides | 6.38e-07 | 1 |