FFCP PHASE1:Hg19::chr12:71031247..71031262,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:71031247..71031262,- to FFCP PHASE1:Hg19::chr12:71031247..71031262,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5787 | |EntrezGene=5787 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9665 | |HGNC=9665 | ||
|TSSclassifier=strong | |||
|UniProt=P23467,Q86VA4 | |UniProt=P23467,Q86VA4 | ||
|association_with_transcript=-27bp_to_ENST00000334414,ENST00000552253,NM_001109754_5end | |||
|cluster_id=chr12:71031247..71031262,- | |||
|coexpression_cluster_id=C428 | |||
|description=CAGE_peak_7_at_PTPRB_5end | |||
|id=chr12:71031247..71031262,- | |||
|ontology_enrichment_celltype=CL:0002139!1.07e-38!24;CL:0000115!1.98e-33!35;CL:0000071!4.35e-29!18;CL:0002546!4.35e-29!18;CL:0002078!1.78e-24!44;CL:0000213!1.17e-16!57;CL:0000215!1.17e-16!57;CL:1000413!1.27e-15!9;CL:0002544!4.03e-11!6;CL:0005020!4.09e-11!6;CL:0002138!4.09e-11!6;CL:0005022!4.09e-11!6;CL:0002543!1.85e-10!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.51e-102;24!CL:0000115;2.94e-75;36!CL:0000071;4.94e-74;18!CL:0002078;4.13e-48;45!CL:1000413;1.06e-42;9!CL:0000213;7.64e-31;58!CL:0000215;7.64e-31;58!CL:0002544;1.94e-29;6!CL:0002138;1.98e-29;6!CL:0002543;8.84e-20;6!CL:0002144;2.87e-15;3!CL:0002618;9.22e-15;3!CL:0000076;1.20e-11;63!CL:0002545;5.94e-11;2!CL:0002188;5.11e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.59e-102,24;CL:0000115,6.65e-92,36;CL:0000071,5.56e-74,18;CL:0002546,5.56e-74,18;CL:0002078,2.78e-72,45;CL:0000213,1.10e-54,58;CL:0000215,1.10e-54,58;CL:1000413,9.93e-43,9;CL:0002544,1.72e-29,6;CL:0005020,1.80e-29,6;CL:0002138,1.80e-29,6;CL:0005022,1.80e-29,6;CL:0000222,5.86e-23,121;CL:0002543,1.10e-19,6;CL:0000076,2.76e-18,63;CL:0002144,2.67e-15,3;CL:0002618,1.01e-14,3;CL:0002545,5.66e-11,2;CL:0002188,5.63e-09,5;CL:0002321,7.30e-08,250;CL:0000066,8.27e-08,253 | |||
|ontology_enrichment_development_v019=CL:0002546;4.94e-74;18!CL:0005022;1.98e-29;6!CL:0000222;1.34e-09;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.46e-39!115;UBERON:0001986!4.35e-29!18;UBERON:0004638!4.35e-29!18;UBERON:0004852!4.35e-29!18;UBERON:0004111!8.73e-25!241;UBERON:0000487!1.29e-22!22;UBERON:0000025!2.62e-22!194;UBERON:0000477!9.37e-21!286;UBERON:0006914!3.87e-19!25;UBERON:0000055!2.37e-17!69;UBERON:0003915!1.27e-15!9;UBERON:0004700!1.27e-15!9;UBERON:0001917!1.27e-15!9;UBERON:0001049!1.07e-14!57;UBERON:0005068!1.07e-14!57;UBERON:0006241!1.07e-14!57;UBERON:0007135!1.07e-14!57;UBERON:0002049!8.11e-14!79;UBERON:0007798!8.11e-14!79;UBERON:0004872!1.55e-13!84;UBERON:0001981!1.23e-12!60;UBERON:0007500!1.23e-12!60;UBERON:0004537!1.23e-12!60;UBERON:0006965!1.23e-12!60;UBERON:0001009!2.40e-12!113;UBERON:0000483!1.03e-11!309;UBERON:0002616!1.06e-11!59;UBERON:0000119!2.14e-11!312;UBERON:0003075!3.23e-11!86;UBERON:0007284!3.23e-11!86;UBERON:0002780!7.86e-11!41;UBERON:0001890!7.86e-11!41;UBERON:0006240!7.86e-11!41;UBERON:0004535!1.23e-10!110;UBERON:0003080!1.94e-10!42;UBERON:0002346!2.65e-10!90;UBERON:0003914!3.10e-10!118;UBERON:0000955!1.85e-09!69;UBERON:0006238!1.85e-09!69;UBERON:0002020!3.73e-09!34;UBERON:0003528!3.73e-09!34;UBERON:0005743!4.27e-09!86;UBERON:0001017!4.53e-09!82;UBERON:0000467!4.68e-09!625;UBERON:0000480!5.44e-09!626;UBERON:0000468!6.18e-09!659;UBERON:0001893!6.23e-09!34;UBERON:0001638!2.07e-08!9;UBERON:0003920!2.07e-08!9;UBERON:0004582!2.07e-08!9;UBERON:0002791!2.58e-08!33;UBERON:0001473!5.12e-08!8;UBERON:0004536!5.12e-08!8;UBERON:0006558!5.12e-08!8;UBERON:0002465!6.82e-08!10;UBERON:0001869!1.05e-07!32;UBERON:0000073!1.77e-07!94;UBERON:0001016!1.77e-07!94;UBERON:0002298!4.64e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;4.94e-74;18!UBERON:0001986;4.94e-74;18!UBERON:0004852;4.94e-74;18!UBERON:0000487;7.59e-60;22!UBERON:0006914;3.49e-52;25!UBERON:0003915;1.06e-42;9!UBERON:0004700;1.06e-42;9!UBERON:0001917;1.06e-42;9!UBERON:0000490;4.65e-35;33!UBERON:0001473;6.32e-22;8!UBERON:0004536;6.32e-22;8!UBERON:0006558;6.32e-22;8!UBERON:0000055;1.90e-21;65!UBERON:0002465;2.04e-17;10!UBERON:0010523;2.87e-15;3!UBERON:0001915;2.87e-15;3!UBERON:0001982;2.87e-15;3!UBERON:0007500;1.24e-14;56!UBERON:0001981;1.24e-14;56!UBERON:0004537;1.24e-14;56!UBERON:0002049;2.93e-14;75!UBERON:0007798;2.93e-14;75!UBERON:0001638;4.14e-13;9!UBERON:0003920;4.14e-13;9!UBERON:0004582;4.14e-13;9!UBERON:0003914;3.50e-11;74!UBERON:0005800;5.94e-11;2!UBERON:0001515;5.94e-11;2!UBERON:0002405;2.83e-10;27!UBERON:0001009;7.77e-10;112!UBERON:0000025;2.11e-09;93!UBERON:0004535;2.87e-09;109!UBERON:0002066;4.76e-09;5!UBERON:0000947;5.97e-08;21!UBERON:0010191;5.97e-08;21!UBERON:0001637;7.12e-08;42!UBERON:0003509;7.12e-08;42!UBERON:0004572;7.12e-08;42!UBERON:0004111;1.06e-07;130!UBERON:0002106;5.55e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,5.56e-74,18;UBERON:0001986,5.56e-74,18;UBERON:0004852,5.56e-74,18;UBERON:0000487,8.35e-60,22;UBERON:0006914,3.79e-52,25;UBERON:0003915,9.93e-43,9;UBERON:0004700,9.93e-43,9;UBERON:0001917,9.93e-43,9;UBERON:0000055,9.92e-39,68;UBERON:0002049,5.19e-33,78;UBERON:0007798,5.19e-33,78;UBERON:0007500,6.31e-25,59;UBERON:0001981,6.31e-25,59;UBERON:0004537,6.31e-25,59;UBERON:0006965,6.31e-25,59;UBERON:0004535,6.08e-24,109;UBERON:0001009,3.86e-23,112;UBERON:0004872,1.34e-22,83;UBERON:0001473,5.89e-22,8;UBERON:0004536,5.89e-22,8;UBERON:0006558,5.89e-22,8;UBERON:0002465,1.93e-17,10;UBERON:0003914,3.50e-16,117;UBERON:0010523,2.67e-15,3;UBERON:0001915,2.67e-15,3;UBERON:0001982,2.67e-15,3;UBERON:0001638,4.77e-13,9;UBERON:0003920,4.77e-13,9;UBERON:0004582,4.77e-13,9;UBERON:0004111,2.91e-12,240;UBERON:0005800,5.66e-11,2;UBERON:0001515,5.66e-11,2;UBERON:0003081,8.73e-10,203;UBERON:0000025,1.22e-09,192;UBERON:0003887,1.95e-09,12;UBERON:0002066,5.04e-09,5;UBERON:0000947,5.78e-08,21;UBERON:0010191,5.78e-08,21;UBERON:0001637,6.96e-08,42;UBERON:0003509,6.96e-08,42;UBERON:0004572,6.96e-08,42;UBERON:0002106,5.55e-07,3;UBERON:0004854,5.55e-07,3;UBERON:0009034,5.55e-07,3;UBERON:0002095,5.55e-07,3;UBERON:0004782,5.55e-07,3;UBERON:0003281,5.55e-07,3;UBERON:0009664,5.55e-07,3;UBERON:0002296,5.55e-07,3;UBERON:0005602,5.55e-07,3;UBERON:0001179,5.55e-07,3;UBERON:0006293,5.55e-07,3;UBERON:0004876,6.07e-07,11 | |||
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|short_description=p7@PTPRB | |||
}} | }} |
Latest revision as of 16:05, 24 September 2015
Short description: | p7@PTPRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PTPRB_5end |
Coexpression cluster: | C428_Endothelial_Renal_Lymphatic_Hepatic_adipose_heart_breast |
Association with transcript: | -27bp_to_ENST00000334414, ENST00000552253, NM_001109754_5end |
EntrezGene: | PTPRB |
HGNC: | 9665 |
UniProt: | P23467Q86VA4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.59e-102 | 24 |
endothelial cell | 6.65e-92 | 36 |
blood vessel endothelial cell | 5.56e-74 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.56e-74 | 18 |
meso-epithelial cell | 2.78e-72 | 45 |
lining cell | 1.10e-54 | 58 |
barrier cell | 1.10e-54 | 58 |
endothelial cell of artery | 9.93e-43 | 9 |
aortic endothelial cell | 1.72e-29 | 6 |
lymphangioblast | 1.80e-29 | 6 |
endothelial cell of lymphatic vessel | 1.80e-29 | 6 |
vascular lymphangioblast | 1.80e-29 | 6 |
mesodermal cell | 5.86e-23 | 121 |
vein endothelial cell | 1.10e-19 | 6 |
squamous epithelial cell | 2.76e-18 | 63 |
capillary endothelial cell | 2.67e-15 | 3 |
endothelial cell of umbilical vein | 1.01e-14 | 3 |
thoracic aorta endothelial cell | 5.66e-11 | 2 |
glomerular endothelial cell | 5.63e-09 | 5 |
embryonic cell | 7.30e-08 | 250 |
epithelial cell | 8.27e-08 | 253 |