FFCP PHASE1:Hg19::chr12:32552269..32552321,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:32552269..32552321,+ to FFCP PHASE1:Hg19::chr12:32552269..32552321,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=121512 | |EntrezGene=121512 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19125 | |HGNC=19125 | ||
|TSSclassifier=strong | |||
|UniProt=F8VWL3 | |UniProt=F8VWL3 | ||
|association_with_transcript=-141bp_to_ENST00000534526_5end | |||
|cluster_id=chr12:32552269..32552321,+ | |||
|coexpression_cluster_id=C128 | |||
|description=CAGE_peak_9_at_FGD4_5end | |||
|id=chr12:32552269..32552321,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.57e-25!254;CL:0002076!1.69e-13!43;CL:0000223!6.59e-10!59;CL:0002251!1.60e-07!21;CL:0000039!5.28e-07!7;CL:0000586!5.28e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002322;5.34e-17;5!CL:0002076;1.76e-12;42!CL:0002231;8.03e-11;3!CL:0000039;4.26e-09;7!CL:0000586;4.26e-09;7!CL:0002251;2.98e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.91e-17,5;CL:0002076,2.97e-14,42;CL:0000223,1.82e-12,58;CL:0002231,7.66e-11,3;CL:0000066,1.09e-09,253;CL:0000039,4.27e-09,7;CL:0000586,4.27e-09,7;CL:0002251,3.27e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.79e-09;10!UBERON:0005564;1.79e-09;10!CL:0000223;2.56e-07;58 | |||
|ontology_enrichment_disease=DOID:305!2.27e-17!106;DOID:0050687!1.28e-11!143;DOID:1749!4.29e-10!14;DOID:299!1.57e-07!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.44e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.62e-13!169;UBERON:0000925!4.62e-13!169;UBERON:0006595!4.62e-13!169;UBERON:0001007!2.37e-09!155;UBERON:0001555!2.37e-09!155;UBERON:0007026!2.37e-09!155;UBERON:0001004!1.22e-08!72;UBERON:0005631!1.94e-08!14;UBERON:0000158!1.94e-08!14;UBERON:0000464!9.18e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;8.28e-09;17!UBERON:0001052;1.04e-08;4!UBERON:0005409;1.45e-08;22!UBERON:0000473;5.96e-08;8!UBERON:0004921;2.16e-07;33!UBERON:0003101;3.27e-07;22!UBERON:0000079;3.27e-07;22!UBERON:0004907;4.88e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001052,7.64e-09,4;UBERON:0000160,8.21e-09,17;UBERON:0004119,9.25e-09,160;UBERON:0000925,9.25e-09,160;UBERON:0006595,9.25e-09,160;UBERON:0005631,1.43e-08,14;UBERON:0000158,1.43e-08,14;UBERON:0000473,5.99e-08,8;UBERON:0005409,2.02e-07,25;UBERON:0003101,3.24e-07,22;UBERON:0000079,3.24e-07,22;UBERON:0004907,3.82e-07,5 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,1.09220686065086,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,1.10926203050036,0,0,0,1.10799081706375,0.200544447470142,0.434021741431704,0,0,0,0,0.755751887377619,0,0,0,0,0,0,0.236482229888585,0,0.645484683583826,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.212604299965044,0,0.112328631146495,0.150176892841506,0.64290234678832,0,0.19891667719909,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0.196468613246569,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0.71153252537342,0.33472061276467,0.402829317109147,0,0.488124115096339,0,0,0.0892997282840798,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0.269421344139376,0.163461903113459,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0.30648779579902,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.818238361772504,1.43402297694502,1.21973706129595,2.65059536642971,2.67246068599892,1.96956004529204,1.51392510525377,7.2995471815166,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0,0.237270619111097,0.269662616320329,0,0,0,0,0,0,0,0,0,0,2.58275720940538,0,0.878002283269004,0,0.402115889646523,0.185176890317059,0,0,0,0.231860809950154,0.352226082707465,0,0,0.190254152234598,0,0,0,0.468008530278475,0.148631162288728,0,0.335964256397719,0.992425680696705,0.447792613514241,0.290633938513962,0.766765358330422,0,0,0,0,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0.303127571446259,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,2.77976734060731,1.00253235151642,1.93370076765382,0,0,0,0,0.847168708148562,0.784349769176855,0,0.422206515571503,0,0.170093705276516,0,0,0.270946437543853,0,0.509752546090077,0,0,0,0,0,0.328014645699706,0,0.412164046590889,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0.107420244868274,0,0,0,0.826424576804891,1.15314040419064,2.80747967488085,1.51736671283325,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0.670302275535787,1.08890984861323,1.22386941009813,0.43050537267123,0,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,2.88743956579008,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30998378285754,0.146508179271894,0,0,0,5.01363417949149,0.593929361665277,4.91457123358771,0,0,0.222617410045812,0.16480387422676,0.63337622438398,0.19924798825107,0,0,0.102268682502155,0,0,3.05552393900911,0.895105873378046,0,0.394573622547734,0,0,0,0.0927680981618513,0,0.520855522170466,0.174919999992391,0,0.227586896570999,0.762760950878299,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0.0769502585037971,0,0.23056390438806,0.718061155278177,0.54323685961004,2.55200927785536,0.824378340616761,0.533034776018635,0,0,0,0,0,0,0,0,0.421996129056054,0.652931232636591,1.83758992864123,0,0,0.796118080530053,1.22206028986725,0,0.123563938946503,0,0.067401132980677,0,0,0,1.36965233252463,0,0.394584402849391,0,0,0.063186579628488,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0.347119476670262,0.979923974143776,0.522355239482415,0,0,0.0967563312890851,0.292357268344742,0.246346371159628,0,0.176512253383001,0.90392296312213,0,0,0.0633107959558787,0.782205530939212,0.160317640503067,0.640358984218058,0,1.29681375438695,0,0,0.288109595976299,0.124252535565433,1.64985824231757,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.599037001496973,0,0,0.0671834724867263,0,2.32991899054908,0,0,0,0.0984274815147488,0,0,0.136203406111576,2.73280352390533,3.02586760513914,2.49264202817511,0,1.5476039091159,0,0.335434687599266,0.630445658393585,1.88836517285993,0,0,2.49489756515279,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0.342173675768659,2.81926008926669,0.320362237703084,0.628817220398664,0,0,0,0.121792598380896,1.27668251554036,0.544017803369474,0.5013797880454,0,0,0.471162288750703,0,0,0.1251909307065,0,0,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0.192619830407303,0,0,0,0.231522474323834,0,0,0,0.219284049578707,0,0.192914038270915,0,0.512483037175893,0,0.303859956177382,0.276516872303462,0,0.398594520940089,0,0.327609848846413,0.245772908753719,0.845248493434508,0,0,0,0,0,1.39879507719444,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,1.07962490351128,0.471878893390961,1.46742878817343,0.346576998451015,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,3.1049778105579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| ||
|short_description=p9@FGD4 | |||
}} | }} |
Latest revision as of 04:55, 18 September 2015
Short description: | p9@FGD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_FGD4_5end |
Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
Association with transcript: | -141bp_to_ENST00000534526_5end |
EntrezGene: | FGD4 |
HGNC: | 19125 |
UniProt: | F8VWL3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.91e-17 | 5 |
endo-epithelial cell | 2.97e-14 | 42 |
endodermal cell | 1.82e-12 | 58 |
epithelial cell of prostate | 7.66e-11 | 3 |
epithelial cell | 1.09e-09 | 253 |
germ line cell | 4.27e-09 | 7 |
germ cell | 4.27e-09 | 7 |
epithelial cell of alimentary canal | 3.27e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
rectum | 7.64e-09 | 4 |
intestine | 8.21e-09 | 17 |
endoderm-derived structure | 9.25e-09 | 160 |
endoderm | 9.25e-09 | 160 |
presumptive endoderm | 9.25e-09 | 160 |
extraembryonic membrane | 1.43e-08 | 14 |
membranous layer | 1.43e-08 | 14 |
testis | 5.99e-08 | 8 |
gastrointestinal system | 2.02e-07 | 25 |
male organism | 3.24e-07 | 22 |
male reproductive system | 3.24e-07 | 22 |
lower digestive tract | 3.82e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.44e-09 | 106 |