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{{UBERON
{{UBERON
|id=UBERON:0006554
|alt_id=
|name=urinary system structure
|namespace=
|def=
|xref=SCTID:122489005
|is_a=UBERON:0000061
|synonym=
|comment=editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning
|comment=editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006554
|is_a=UBERON:0000061
|is_obsolete=
|located_in=
|located_in=
|name=urinary system structure
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001008
|part_of=UBERON:0001008
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=SCTID:122489005
}}
}}

Latest revision as of 17:57, 12 September 2014

Name:urinary system structure
Namespace:FANTOM
Xrefs:
links:
SCTID:122489005
Comments:editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000061(anatomical structure)
part_of:UBERON:0001008(renal system)



Children

is a:UBERON:0000057 (urethra),UBERON:0000074 (renal glomerulus),UBERON:0000163 (embryonic cloaca),UBERON:0000365 (urothelium),UBERON:0001225 (cortex of kidney),UBERON:0001229 (renal corpuscle),UBERON:0001230 (glomerular capsule),UBERON:0001255 (urinary bladder),UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),UBERON:0001285 (nephron),UBERON:0001556 (lower urinary tract),UBERON:0002113 (kidney),UBERON:0002303 (juxtaglomerular apparatus),UBERON:0002319 (mesangium),UBERON:0002321 (extraglomerular mesangium),UBERON:0004819 (kidney epithelium),UBERON:0005215 (kidney interstitium),UBERON:0005749 (glomerular tuft),UBERON:0006555 (excretory tube),UBERON:0008987 (renal parenchyma),UBERON:0009846 (embryonic cloacal epithelium),UBERON:0011143 (upper urinary tract)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006554 (urinary system structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.43e-62FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_a12c81a99ce4118b7a5f6e81a2224f15p6@Hoxd8
2.43e-62FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_a12c81a99ce4118b7a5f6e81a2224f15p6@Hoxd8
1.46e-57FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_d64cfe14798d1595d0f7eded6b632bd3p8@Hoxd8
1.46e-57FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_d64cfe14798d1595d0f7eded6b632bd3p8@Hoxd8
8.31e-53FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_7fbc0798c3dc9e2d637ba11cbcdddbb3p@chr19:44824107..44824111, -
8.31e-53FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_7fbc0798c3dc9e2d637ba11cbcdddbb3p@chr19:44824107..44824111, -
4.88e-51FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_64db49eadda4cc5c03a23aa46d022eb5p5@Cldn8
4.88e-51FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_64db49eadda4cc5c03a23aa46d022eb5p5@Cldn8
1.53e-48FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_c602e73c4e777eda2f6fa8219c60cd41p@chr10:3291561..3291580, +
1.53e-48FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_c602e73c4e777eda2f6fa8219c60cd41p@chr10:3291561..3291580, +
4.49e-48FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_3f07d6f29a33f9fe995baae9a4a7113cp@chr19:44821149..44821161, +
4.49e-48FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_3f07d6f29a33f9fe995baae9a4a7113cp@chr19:44899724..44899728, +
4.49e-48FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_3f07d6f29a33f9fe995baae9a4a7113cp@chr19:44821149..44821161, +
4.49e-48FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_3f07d6f29a33f9fe995baae9a4a7113cp@chr19:44899724..44899728, +
3.63e-47FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_3cc1c34961c9d6314859e74253cc4276p4@PAX2
3.63e-47FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_3cc1c34961c9d6314859e74253cc4276p4@PAX2
3.57e-46FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_1333039880d639cb6658e733f5257694p@chr8:107148422..107148433, +
3.57e-46FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_1333039880d639cb6658e733f5257694p@chr8:107148422..107148433, +
1.85e-45FFCP PHASE2:Mm9::chr16:88563264..88563271,-#_c57ce8e1d58622dfe6a71533dc5d082cp@chr16:88563264..88563271, -
1.85e-45FFCP PHASE1:Mm9::chr16:88563264..88563271,-#_c57ce8e1d58622dfe6a71533dc5d082cp@chr16:88563264..88563271, -
5.85e-45FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_7a25ea7335878f48db5060ece0cc6233p5@Scp2
5.85e-45FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_7a25ea7335878f48db5060ece0cc6233p5@Scp2
6.9e-45FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_ee463976bccd5893882ee07c083f5b05p@chr10:50689167..50689171, +
6.9e-45FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_ee463976bccd5893882ee07c083f5b05p@chr10:50689167..50689171, +
8.37e-45FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_1607f143c87390884ab70d447c67d1c0p@chr5:24755801..24755819, +
8.37e-45FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_1607f143c87390884ab70d447c67d1c0p@chr5:24755801..24755819, +
1.02e-44FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_434aa9b7a17a47f0122f76800692a609p@chr19:59532611..59532623, +
1.02e-44FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_434aa9b7a17a47f0122f76800692a609p@chr19:59532611..59532623, +
8.96e-44FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_6337f0b88e0da16fcee57dfdf2a61265p1@ENSMUST00000154177
8.96e-44FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_6337f0b88e0da16fcee57dfdf2a61265p1@ENSMUST00000154177
9.94e-44FFCP PHASE1:Mm9::chr12:80169429..80169447,-#_9dba1c14cde225186be3ac67ffb5b826p@chr12:80169429..80169447, -
9.94e-44FFCP PHASE2:Mm9::chr12:80169429..80169447,-#_9dba1c14cde225186be3ac67ffb5b826p@chr12:80169429..80169447, -
2.31e-43FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:79277411..79277429, +
2.31e-43FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:79277411..79277429, +
2.31e-43FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr8:118959620..118959632, -
2.31e-43FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
2.31e-43FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr7:47891824..47891827, -
2.31e-43FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap2@Nphs1
2.31e-43FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap2@Nphs1
2.31e-43FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:39251651..39251690, +
2.31e-43FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:39251651..39251690, +
2.31e-43FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap4@Ros1
2.31e-43FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr8:118959620..118959632, -
2.31e-43FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap7@Steap2
2.31e-43FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap4@Ros1
2.31e-43FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr19:17554168..17554181, +
2.31e-43FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr2:74971765..74971779, -
2.31e-43FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr2:74971765..74971779, -
2.31e-43FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:50622895..50622905, +
2.31e-43FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr19:17554168..17554181, +
2.31e-43FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap7@Steap2
2.31e-43FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
2.31e-43FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr7:47891824..47891827, -
2.31e-43FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:50622895..50622905, +
2.31e-43FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap3@uc009jll.1
2.31e-43FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap3@uc009jll.1
1.27e-42FFCP PHASE1:Mm9::chr2:9809451..9809469,-#_6046711f12307f7b0d6fb7bb4f7c69eep6@Gata3
1.27e-42FFCP PHASE2:Mm9::chr2:9809451..9809469,-#_6046711f12307f7b0d6fb7bb4f7c69eep6@Gata3
1.46e-40FFCP PHASE2:Mm9::chr16:88563375..88563386,-#_9b6361a6acb85d9147d345a0d2bd906dp4@Cldn8
1.46e-40FFCP PHASE1:Mm9::chr16:88563375..88563386,-#_9b6361a6acb85d9147d345a0d2bd906dp4@Cldn8
2.85e-40FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_5357703b57c75a3fccfcd665a536a056p@chr11:75720190..75720216, -
2.85e-40FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_5357703b57c75a3fccfcd665a536a056p@chr11:75720190..75720216, -
2.87e-40FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_3dde910fa63c6387639f87c26b61ad9dp7@HOXA10
2.87e-40FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_3dde910fa63c6387639f87c26b61ad9dp7@HOXA10
3.14e-40FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_8d3ad166258755320681f94805c3d083p3@2810008M24Rik
3.14e-40FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_8d3ad166258755320681f94805c3d083p3@2810008M24Rik
3.79e-40FFCP PHASE2:Mm9::chr14:30665533..30665556,-#_302f9cc41fe56275c74f390c5738b58ep@chr14:30665533..30665556, -
3.79e-40FFCP PHASE1:Mm9::chr14:30665533..30665556,-#_302f9cc41fe56275c74f390c5738b58ep@chr14:30665533..30665556, -
6.1e-40FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_f69084a5122dff4c14633a568dcccf71p1@ENSMUST00000143898
6.1e-40FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_f69084a5122dff4c14633a568dcccf71p1@ENSMUST00000143898
3.85e-39FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_c5168f3ef6551e48f5b7630b50e696c5p3@PAX2
3.85e-39FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_c5168f3ef6551e48f5b7630b50e696c5p3@PAX2
3.98e-39FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_79ca84133a03102f14f8c2881cefc76ap@chr3:154257229..154257241, -
3.98e-39FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_79ca84133a03102f14f8c2881cefc76ap@chr10:12353875..12353921, -
3.98e-39FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_79ca84133a03102f14f8c2881cefc76ap@chr3:154257229..154257241, -
3.98e-39FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_79ca84133a03102f14f8c2881cefc76ap2@uc009jll.1
3.98e-39FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_79ca84133a03102f14f8c2881cefc76ap2@uc009jll.1
3.98e-39FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_79ca84133a03102f14f8c2881cefc76ap@chr10:12353875..12353921, -
3.98e-39FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_79ca84133a03102f14f8c2881cefc76ap4@Nphs1
3.98e-39FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_79ca84133a03102f14f8c2881cefc76ap4@Nphs1
4.87e-39FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_889281810f049b6c1f80150e364b0366p4@Pdzk1
4.87e-39FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_889281810f049b6c1f80150e364b0366p4@Pdzk1
5.41e-39FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_694b2f2dc7ffed9f94b7cda05cba0fe9p@chr10:3291584..3291599, +
5.41e-39FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_694b2f2dc7ffed9f94b7cda05cba0fe9p@chr10:3291584..3291599, +
6.27e-39FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_1566aa7f37a6cb02c1cd5abd0b37f789p8@Rgnef
6.27e-39FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_1566aa7f37a6cb02c1cd5abd0b37f789p8@Rgnef
8.15e-39FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_8d4b520358976d6cc336af2d5d263a63p9@Ppt2
8.15e-39FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_8d4b520358976d6cc336af2d5d263a63p9@Ppt2
1.13e-38FFCP PHASE1:Mm9::chr16:26463232..26463247,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp3@Cldn16
1.13e-38FFCP PHASE2:Mm9::chr2:74971811..74971824,-#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr2:74971811..74971824, -
1.13e-38FFCP PHASE2:Mm9::chr2:152447861..152447872,-#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr2:152447861..152447872, -
1.13e-38FFCP PHASE1:Mm9::chr2:74971811..74971824,-#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr2:74971811..74971824, -
1.13e-38FFCP PHASE2:Mm9::chr6:34129301..34129309,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp3@ENSMUST00000145644
1.13e-38FFCP PHASE1:Mm9::chr2:124979757..124979768,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr2:124979757..124979768, +
1.13e-38FFCP PHASE1:Mm9::chr14:71030002..71030013,-#_d3a3ac132ed75aedb6cf9d3ae80c324bp14@Epb4.9
1.13e-38FFCP PHASE1:Mm9::chr2:24289622..24289625,-#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr2:24289622..24289625, -
1.13e-38FFCP PHASE1:Mm9::chr11:75720175..75720186,-#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr11:75720175..75720186, -
1.13e-38FFCP PHASE2:Mm9::chr6:129464470..129464474,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr6:129464470..129464474, +
1.13e-38FFCP PHASE1:Mm9::chr6:83708841..83708859,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr6:83708841..83708859, +
1.13e-38FFCP PHASE2:Mm9::chr6:83708841..83708859,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr6:83708841..83708859, +

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