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{{UBERON
{{UBERON
|id=UBERON:0003296
|alt_id=
|name=gland of diencephalon
|namespace=
|def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
|xref=EHDAA:4475;;EHDAA2:0000395;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653
|is_a=UBERON:0002530;;UBERON:0004121
|synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003296
|is_a=UBERON:0002530 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=gland of diencephalon
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001894
|part_of=UBERON:0001894
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic]
|union_of=
|xref=EHDAA2:0000395;;EHDAA:4475;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653
}}
}}

Latest revision as of 17:39, 12 September 2014

Name:gland of diencephalon
Namespace:FANTOM
Definition:"A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA2:0000395
EHDAA:4475
EMAPA:16646
EMAPA:16897

VHOG:0000653
Synonyms: "between brain gland" EXACT [OBOL:automatic]
"diencephalon gland" EXACT [OBOL:automatic]
"gland of between brain" EXACT [OBOL:automatic]
"gland of interbrain" EXACT [OBOL:automatic]
"gland of mature diencephalon" EXACT [OBOL:automatic]
"interbrain gland" EXACT [OBOL:automatic]
"mature diencephalon gland" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002530(gland),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0001894(diencephalon)



Children

is a:UBERON:0000007 (pituitary gland),UBERON:0001905 (pineal body)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003296 (gland of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.57e-195FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85afp@chr19:7979708..7979734, +
2.57e-195FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85afp@chr19:7979708..7979734, +
1.0e-156FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aeep11@SPOCK1
1.0e-156FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aeep11@SPOCK1
1.5e-156FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262cep@chr12:128210626..128210641, -
1.5e-156FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262cep@chr12:128210626..128210641, -
6.94e-147FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbep@chr19:49519930..49519937, -
6.94e-147FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979644..7979653, +
6.94e-147FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbep@chr19:49519930..49519937, -
6.94e-147FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979644..7979653, +
6.94e-147FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbep1@LHB
6.94e-147FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbep1@LHB
6.94e-147FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979677..7979703, +
6.94e-147FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbep@chr19:7979677..7979703, +
2.79e-131FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11p@chr1:99693441..99693485, -
2.79e-131FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11p@chr1:99693441..99693485, -
1.07e-130FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51p5@ENST00000513329
1.07e-130FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51p5@ENST00000513329
1.0e-112FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5p3@ENST00000443800
1.0e-112FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5p3@ENST00000443800
1.76e-111FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbcap2@LHX3
1.76e-111FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbcap2@LHX3
8.91e-111FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88bp@chr22:47126639..47126654, +
8.91e-111FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88bp@chr22:47126639..47126654, +
2.76e-110FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93p@chr4:1233005..1233017, +
2.76e-110FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93p@chr11:75194071..75194110, -
2.76e-110FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93p17@LRRC49
2.76e-110FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93p17@LRRC49
2.76e-110FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93p@chr4:1233005..1233017, +
2.76e-110FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93p@chr11:75194071..75194110, -
5.02e-99FFCP PHASE1:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74p@chr12:128210666..128210685, -
5.02e-99FFCP PHASE2:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74p@chr12:128210666..128210685, -
1.38e-98FFCP PHASE2:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88p@chr9:139095116..139095139, +
1.38e-98FFCP PHASE1:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88p@chr9:139095116..139095139, +
1.55e-98FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_86c8842de92bb34e78ab840208c7dc62p@chr3:139938385..139938390, +
1.55e-98FFCP PHASE1:Hg19::chrX:9528518..9528536,+#_86c8842de92bb34e78ab840208c7dc62p@chrX:9528518..9528536, +
1.55e-98FFCP PHASE1:Hg19::chr7:36878535..36878540,+#_86c8842de92bb34e78ab840208c7dc62p4@ENST00000439998
1.55e-98FFCP PHASE2:Hg19::chr2:241080084..241080093,-#_86c8842de92bb34e78ab840208c7dc62p5@OTOS
1.55e-98FFCP PHASE1:Hg19::chr4:68620100..68620112,-#_86c8842de92bb34e78ab840208c7dc62p1@GNRHR
1.55e-98FFCP PHASE1:Hg19::chr11:18053180..18053192,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18053180..18053192, -
1.55e-98FFCP PHASE2:Hg19::chr6:13009334..13009341,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:13009334..13009341, -
1.55e-98FFCP PHASE1:Hg19::chr20:44991864..44991887,-#_86c8842de92bb34e78ab840208c7dc62p10@SLC35C2
1.55e-98FFCP PHASE2:Hg19::chr2:216447425..216447432,-#_86c8842de92bb34e78ab840208c7dc62p2@ENST00000457625
1.55e-98FFCP PHASE1:Hg19::chr16:18036005..18036011,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:18036005..18036011, -
1.55e-98FFCP PHASE2:Hg19::chr6:22292828..22292837,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22292828..22292837, -
1.55e-98FFCP PHASE2:Hg19::chr17:61995410..61995414,-#_86c8842de92bb34e78ab840208c7dc62p@chr17:61995410..61995414, -
1.55e-98FFCP PHASE2:Hg19::chr4:20985690..20985695,-#_86c8842de92bb34e78ab840208c7dc62p38@KCNIP4
1.55e-98FFCP PHASE2:Hg19::chr8:99033409..99033415,+#_86c8842de92bb34e78ab840208c7dc62p16@MATN2
1.55e-98FFCP PHASE2:Hg19::chr1:240043364..240043366,+#_86c8842de92bb34e78ab840208c7dc62p@chr1:240043364..240043366, +
1.55e-98FFCP PHASE2:Hg19::chr17:6328202..6328224,-#_86c8842de92bb34e78ab840208c7dc62p1@BC014398
1.55e-98FFCP PHASE1:Hg19::chr8:135504405..135504410,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135504405..135504410, -
1.55e-98FFCP PHASE1:Hg19::chr19:49519519..49519562,-#_86c8842de92bb34e78ab840208c7dc62p2@CU678753
1.55e-98FFCP PHASE1:Hg19::chr7:129084265..129084288,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:129084265..129084288, -
1.55e-98FFCP PHASE2:Hg19::chr9:88661694..88661709,-#_86c8842de92bb34e78ab840208c7dc62p@chr9:88661694..88661709, -
1.55e-98FFCP PHASE2:Hg19::chr9:25264978..25265001,+#_86c8842de92bb34e78ab840208c7dc62p@chr9:25264978..25265001, +
1.55e-98FFCP PHASE2:Hg19::chr8:135515939..135515941,+#_86c8842de92bb34e78ab840208c7dc62p@chr8:135515939..135515941, +
1.55e-98FFCP PHASE2:Hg19::chr6:22287768..22287781,-#_86c8842de92bb34e78ab840208c7dc62p@chr6:22287768..22287781, -
1.55e-98FFCP PHASE2:Hg19::chr7:9186866..9186885,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:9186866..9186885, -
1.55e-98FFCP PHASE1:Hg19::chr20:58401898..58401905,+#_86c8842de92bb34e78ab840208c7dc62p@chr20:58401898..58401905, +
1.55e-98FFCP PHASE2:Hg19::chr8:135473205..135473218,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135473205..135473218, -
1.55e-98FFCP PHASE1:Hg19::chr8:87751931..87751947,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:87751931..87751947, -
1.55e-98FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_86c8842de92bb34e78ab840208c7dc62p4@CHRNB2
1.55e-98FFCP PHASE2:Hg19::chr12:55422858..55422866,+#_86c8842de92bb34e78ab840208c7dc62p@chr12:55422858..55422866, +
1.55e-98FFCP PHASE1:Hg19::chr17:61995979..61995990,-#_86c8842de92bb34e78ab840208c7dc62p2@AB591020
1.55e-98FFCP PHASE1:Hg19::chr4:20985967..20985972,-#_86c8842de92bb34e78ab840208c7dc62p28@KCNIP4
1.55e-98FFCP PHASE2:Hg19::chr1:57914395..57914398,+#_86c8842de92bb34e78ab840208c7dc62p@chr1:57914395..57914398, +
1.55e-98FFCP PHASE2:Hg19::chr8:135474173..135474185,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135474173..135474185, -
1.55e-98FFCP PHASE2:Hg19::chr7:31003560..31003576,+#_86c8842de92bb34e78ab840208c7dc62p5@GHRHR
1.55e-98FFCP PHASE1:Hg19::chr9:37668094..37668097,+#_86c8842de92bb34e78ab840208c7dc62p6@FRMPD1
1.55e-98FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_86c8842de92bb34e78ab840208c7dc62p@chr13:52650530..52650533, -
1.55e-98FFCP PHASE1:Hg19::chr13:52650541..52650548,-#_86c8842de92bb34e78ab840208c7dc62p@chr13:52650541..52650548, -
1.55e-98FFCP PHASE2:Hg19::chr8:87755821..87755822,-#_86c8842de92bb34e78ab840208c7dc62p10@CNGB3
1.55e-98FFCP PHASE2:Hg19::chr8:116085391..116085419,+#_86c8842de92bb34e78ab840208c7dc62p@chr8:116085391..116085419, +
1.55e-98FFCP PHASE1:Hg19::chr8:99033409..99033415,+#_86c8842de92bb34e78ab840208c7dc62p16@MATN2
1.55e-98FFCP PHASE1:Hg19::chr17:55484129..55484139,+#_86c8842de92bb34e78ab840208c7dc62p@chr17:55484129..55484139, +
1.55e-98FFCP PHASE1:Hg19::chr6:158734173..158734183,+#_86c8842de92bb34e78ab840208c7dc62p7@TULP4
1.55e-98FFCP PHASE2:Hg19::chr9:37692930..37692936,+#_86c8842de92bb34e78ab840208c7dc62p@chr9:37692930..37692936, +
1.55e-98FFCP PHASE2:Hg19::chr2:17040158..17040170,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:17040158..17040170, +
1.55e-98FFCP PHASE2:Hg19::chr1:45782019..45782028,+#_86c8842de92bb34e78ab840208c7dc62p@chr1:45782019..45782028, +
1.55e-98FFCP PHASE1:Hg19::chr7:9782665..9782674,+#_86c8842de92bb34e78ab840208c7dc62p@chr7:9782665..9782674, +
1.55e-98FFCP PHASE1:Hg19::chr17:61995207..61995219,-#_86c8842de92bb34e78ab840208c7dc62p@chr17:61995207..61995219, -
1.55e-98FFCP PHASE2:Hg19::chr11:18040537..18040547,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18040537..18040547, -
1.55e-98FFCP PHASE1:Hg19::chr12:15134610..15134617,+#_86c8842de92bb34e78ab840208c7dc62p@chr12:15134610..15134617, +
1.55e-98FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_86c8842de92bb34e78ab840208c7dc62p@chr11:18067951..18067954, -
1.55e-98FFCP PHASE2:Hg19::chr16:18066345..18066365,-#_86c8842de92bb34e78ab840208c7dc62p@chr16:18066345..18066365, -
1.55e-98FFCP PHASE2:Hg19::chr12:60826120..60826127,+#_86c8842de92bb34e78ab840208c7dc62p@chr12:60826120..60826127, +
1.55e-98FFCP PHASE1:Hg19::chr6:22294730..22294743,-#_86c8842de92bb34e78ab840208c7dc62p6@PRL
1.55e-98FFCP PHASE2:Hg19::chr15:55470984..55471009,-#_86c8842de92bb34e78ab840208c7dc62p@chr15:55470984..55471009, -
1.55e-98FFCP PHASE1:Hg19::chr13:78813679..78813681,-#_86c8842de92bb34e78ab840208c7dc62p@chr13:78813679..78813681, -
1.55e-98FFCP PHASE1:Hg19::chr12:6954834..6954841,+#_86c8842de92bb34e78ab840208c7dc62p9@GNB3
1.55e-98FFCP PHASE2:Hg19::chr6:22294755..22294768,-#_86c8842de92bb34e78ab840208c7dc62p9@PRL
1.55e-98FFCP PHASE2:Hg19::chr18:56963107..56963117,-#_86c8842de92bb34e78ab840208c7dc62p@chr18:56963107..56963117, -
1.55e-98FFCP PHASE2:Hg19::chr17:61995906..61995914,-#_86c8842de92bb34e78ab840208c7dc62p6@AB591020
1.55e-98FFCP PHASE1:Hg19::chr17:74463567..74463574,+#_86c8842de92bb34e78ab840208c7dc62p4@AANAT
1.55e-98FFCP PHASE2:Hg19::chr2:17185712..17185735,+#_86c8842de92bb34e78ab840208c7dc62p@chr2:17185712..17185735, +
1.55e-98FFCP PHASE2:Hg19::chr8:135473472..135473477,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135473472..135473477, -
1.55e-98FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_86c8842de92bb34e78ab840208c7dc62p@chr15:47662877..47662880, -
1.55e-98FFCP PHASE1:Hg19::chr8:135520309..135520324,-#_86c8842de92bb34e78ab840208c7dc62p@chr8:135520309..135520324, -
1.55e-98FFCP PHASE1:Hg19::chr7:32468385..32468392,-#_86c8842de92bb34e78ab840208c7dc62p@chr7:32468385..32468392, -
1.55e-98FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_86c8842de92bb34e78ab840208c7dc62p@chr12:55422565..55422604, +

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